Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC127070.3-201ENST00000503695 3263 ntBASIC7.75□□□□□ -1.17
COL18A1P39060 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC7.75□□□□□ -1.17
COL18A1P39060 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC7.75□□□□□ -1.17
COL18A1P39060 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC7.75□□□□□ -1.17
COL18A1P39060 AC006335.2-201ENST00000437993 330 ntBASIC7.75□□□□□ -1.17
COL18A1P39060 AL022319.1-201ENST00000458183 1167 ntBASIC7.75□□□□□ -1.17
COL18A1P39060 CBX1P5-201ENST00000475330 559 ntBASIC7.75□□□□□ -1.17
COL18A1P39060 HIGD1AP14-201ENST00000507617 282 ntBASIC7.75□□□□□ -1.17
COL18A1P39060 OR4A42P-201ENST00000531397 938 ntBASIC7.75□□□□□ -1.17
COL18A1P39060 FKBP1AP1-201ENST00000594588 318 ntBASIC7.75□□□□□ -1.17
COL18A1P39060 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC7.75□□□□□ -1.17
COL18A1P39060 AL355974.3-201ENST00000617383 467 ntBASIC7.75□□□□□ -1.17
COL18A1P39060 AC008115.4-201ENST00000619780 775 ntBASIC7.75□□□□□ -1.17
COL18A1P39060 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC7.75□□□□□ -1.17
COL18A1P39060 FRMD5-211ENST00000618556 5059 ntTSL 5 BASIC7.75□□□□□ -1.17
COL18A1P39060 AL592429.1-201ENST00000403909 1473 ntBASIC7.75□□□□□ -1.17
COL18A1P39060 MAP4K4-221ENST00000634702 3800 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
COL18A1P39060 SLC9A6-213ENST00000637234 4691 ntTSL 5 BASIC7.75□□□□□ -1.17
COL18A1P39060 APOBEC4-201ENST00000308641 2650 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
COL18A1P39060 ZNF138-204ENST00000437743 2574 ntAPPRIS ALT2 TSL 1 (best) BASIC7.75□□□□□ -1.17
COL18A1P39060 RNF146-215ENST00000616343 2077 ntAPPRIS ALT1 TSL 5 BASIC7.75□□□□□ -1.17
COL18A1P39060 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
COL18A1P39060 AC068189.1-201ENST00000501164 2632 ntTSL 2 BASIC7.75□□□□□ -1.17
COL18A1P39060 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC7.75□□□□□ -1.17
COL18A1P39060 ERCC6-201ENST00000355832 8008 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
COL18A1P39060 ZNF91-202ENST00000397082 3572 ntAPPRIS ALT2 TSL 2 BASIC7.74□□□□□ -1.17
COL18A1P39060 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC7.74□□□□□ -1.17
COL18A1P39060 LINC02044-201ENST00000490139 2502 ntTSL 2 BASIC7.74□□□□□ -1.17
COL18A1P39060 MME-203ENST00000460393 5622 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
COL18A1P39060 FAM32BP-201ENST00000344033 333 ntBASIC7.74□□□□□ -1.17
COL18A1P39060 CYCSP12-201ENST00000437729 300 ntBASIC7.74□□□□□ -1.17
COL18A1P39060 EEF1B2P5-201ENST00000444820 548 ntBASIC7.74□□□□□ -1.17
COL18A1P39060 YWHAZ-220ENST00000522819 875 ntTSL 3 BASIC7.74□□□□□ -1.17
COL18A1P39060 AC005832.1-201ENST00000544380 572 ntTSL 4 BASIC7.74□□□□□ -1.17
COL18A1P39060 NUFIP1-201ENST00000379161 3492 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
COL18A1P39060 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC7.74□□□□□ -1.17
COL18A1P39060 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
COL18A1P39060 PTPRT-204ENST00000373190 12559 ntAPPRIS ALT2 TSL 5 BASIC7.74□□□□□ -1.17
COL18A1P39060 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC7.74□□□□□ -1.17
COL18A1P39060 SORBS1-211ENST00000371247 7354 ntAPPRIS ALT2 TSL 5 BASIC7.74□□□□□ -1.17
COL18A1P39060 SYNE1-213ENST00000448038 6001 ntTSL 5 BASIC7.74□□□□□ -1.17
COL18A1P39060 ZNF229-204ENST00000614049 4507 ntAPPRIS P3 TSL 1 (best) BASIC7.74□□□□□ -1.17
COL18A1P39060 FAM71F1-209ENST00000621392 1591 ntTSL 5 BASIC7.74□□□□□ -1.17
COL18A1P39060 AL512624.2-201ENST00000621705 2566 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
COL18A1P39060 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC7.74□□□□□ -1.17
COL18A1P39060 SGMS2-202ENST00000394684 6149 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
COL18A1P39060 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC7.74□□□□□ -1.17
COL18A1P39060 IL2RA-203ENST00000379959 3176 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
COL18A1P39060 BRD7-202ENST00000394689 2145 ntAPPRIS ALT1 TSL 1 (best) BASIC7.74□□□□□ -1.17
COL18A1P39060 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC7.74□□□□□ -1.17
COL18A1P39060 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC7.74□□□□□ -1.17
COL18A1P39060 AURKAPS1-201ENST00000451805 1212 ntBASIC7.74□□□□□ -1.17
COL18A1P39060 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC7.74□□□□□ -1.17
COL18A1P39060 VDAC2P4-201ENST00000452925 711 ntBASIC7.74□□□□□ -1.17
COL18A1P39060 AC115223.1-201ENST00000466377 870 ntBASIC7.74□□□□□ -1.17
COL18A1P39060 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC7.74□□□□□ -1.17
COL18A1P39060 RPS4XP1-201ENST00000482189 787 ntBASIC7.74□□□□□ -1.17
COL18A1P39060 RPS21P4-201ENST00000487122 248 ntBASIC7.74□□□□□ -1.17
COL18A1P39060 SCARNA6.1-201ENST00000516989 238 ntBASIC7.74□□□□□ -1.17
COL18A1P39060 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC7.74□□□□□ -1.17
COL18A1P39060 AC063977.5-201ENST00000601044 974 ntBASIC7.74□□□□□ -1.17
COL18A1P39060 TAS2R6P-201ENST00000605022 826 ntBASIC7.74□□□□□ -1.17
COL18A1P39060 MIR6748-201ENST00000610433 71 ntBASIC7.74□□□□□ -1.17
COL18A1P39060 CASC19-264ENST00000641912 1184 ntBASIC7.74□□□□□ -1.17
COL18A1P39060 LINC02177-201ENST00000564305 5298 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
COL18A1P39060 NLGN4X-204ENST00000381095 5870 ntAPPRIS P2 TSL 1 (best) BASIC7.73□□□□□ -1.17
COL18A1P39060 LINC01616-201ENST00000561816 2280 ntBASIC7.73□□□□□ -1.17
COL18A1P39060 TNS1-201ENST00000171887 10331 ntAPPRIS P3 TSL 1 (best) BASIC7.73□□□□□ -1.17
COL18A1P39060 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC7.73□□□□□ -1.17
COL18A1P39060 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC7.73□□□□□ -1.17
COL18A1P39060 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
COL18A1P39060 XIAP-201ENST00000355640 8584 ntAPPRIS P1 TSL 5 BASIC7.73□□□□□ -1.17
COL18A1P39060 MRPS27-202ENST00000457646 2628 ntTSL 2 BASIC7.73□□□□□ -1.17
COL18A1P39060 AP2B1-215ENST00000616681 3267 ntTSL 2 BASIC7.73□□□□□ -1.17
COL18A1P39060 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC7.73□□□□□ -1.17
COL18A1P39060 LINC01918-202ENST00000438148 415 ntTSL 3 BASIC7.73□□□□□ -1.17
COL18A1P39060 MS4A6A-210ENST00000529054 1160 ntTSL 5 BASIC7.73□□□□□ -1.17
COL18A1P39060 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC7.73□□□□□ -1.17
COL18A1P39060 APPL2-203ENST00000546731 684 ntTSL 2 BASIC7.73□□□□□ -1.17
COL18A1P39060 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC7.73□□□□□ -1.17
COL18A1P39060 AC116651.1-201ENST00000609724 556 ntBASIC7.73□□□□□ -1.17
COL18A1P39060 RPSAP73-201ENST00000614820 330 ntBASIC7.73□□□□□ -1.17
COL18A1P39060 CARF-202ENST00000402905 5938 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
COL18A1P39060 TRPM1-202ENST00000397795 5687 ntAPPRIS P3 TSL 1 (best) BASIC7.73□□□□□ -1.17
COL18A1P39060 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC7.73□□□□□ -1.17
COL18A1P39060 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
COL18A1P39060 CTAGE11P-201ENST00000451540 2353 ntBASIC7.73□□□□□ -1.17
COL18A1P39060 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC7.73□□□□□ -1.17
COL18A1P39060 RRP8-201ENST00000254605 6560 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
COL18A1P39060 CELF2-209ENST00000631460 5538 ntTSL 5 BASIC7.73□□□□□ -1.17
COL18A1P39060 CDKAL1-204ENST00000613575 1673 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
COL18A1P39060 MTIF2-201ENST00000263629 2528 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
COL18A1P39060 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
COL18A1P39060 VPS13A-203ENST00000360280 15320 ntAPPRIS P4 TSL 1 (best) BASIC7.73□□□□□ -1.17
COL18A1P39060 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
COL18A1P39060 AL391261.1-201ENST00000555712 1479 ntBASIC7.72□□□□□ -1.17
COL18A1P39060 ART4-201ENST00000228936 5129 ntAPPRIS P2 TSL 1 (best) BASIC7.72□□□□□ -1.17
COL18A1P39060 LINC01903-201ENST00000580659 2149 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
COL18A1P39060 ELOVL5-203ENST00000370918 3081 ntTSL 2 BASIC7.72□□□□□ -1.17
COL18A1P39060 CLASP1-208ENST00000455322 5660 ntTSL 5 BASIC7.72□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 180.7 ms