Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 ADAM3B-201ENST00000569937 840 ntBASIC5.79□□□□□ -1.48
SDC1P18827 RN7SL66P-201ENST00000582099 264 ntBASIC5.79□□□□□ -1.48
SDC1P18827 AC005899.5-201ENST00000584721 552 ntTSL 5 BASIC5.79□□□□□ -1.48
SDC1P18827 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC5.79□□□□□ -1.48
SDC1P18827 AP000654.1-201ENST00000602510 1192 ntTSL 5 BASIC5.79□□□□□ -1.48
SDC1P18827 RPSAP75-201ENST00000605848 301 ntBASIC5.79□□□□□ -1.48
SDC1P18827 ARF4-AS1-203ENST00000607782 552 ntTSL 3 BASIC5.79□□□□□ -1.48
SDC1P18827 AC021422.1-201ENST00000621212 473 ntBASIC5.79□□□□□ -1.48
SDC1P18827 AC011346.1-204ENST00000638089 1210 ntAPPRIS P5 TSL 3 BASIC5.79□□□□□ -1.48
SDC1P18827 STK3-216ENST00000523601 3107 ntTSL 2 BASIC5.79□□□□□ -1.48
SDC1P18827 LINC01613-201ENST00000561476 2780 ntBASIC5.79□□□□□ -1.48
SDC1P18827 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SDC1P18827 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SDC1P18827 LINC00907-201ENST00000585627 3324 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SDC1P18827 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SDC1P18827 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SDC1P18827 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC5.78□□□□□ -1.48
SDC1P18827 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SDC1P18827 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SDC1P18827 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
SDC1P18827 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC5.78□□□□□ -1.48
SDC1P18827 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
SDC1P18827 RNU105B-201ENST00000364478 208 ntBASIC5.78□□□□□ -1.48
SDC1P18827 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SDC1P18827 OR5D16-201ENST00000378396 987 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
SDC1P18827 AL133260.1-201ENST00000405720 405 ntBASIC5.78□□□□□ -1.48
SDC1P18827 AC096669.1-201ENST00000422203 648 ntTSL 5 BASIC5.78□□□□□ -1.48
SDC1P18827 AL031767.1-201ENST00000426374 386 ntTSL 5 BASIC5.78□□□□□ -1.48
SDC1P18827 RPL32-206ENST00000435983 620 ntAPPRIS P1 TSL 2 BASIC5.78□□□□□ -1.48
SDC1P18827 UBQLN1P1-207ENST00000441056 1169 ntBASIC5.78□□□□□ -1.48
SDC1P18827 AL450263.1-202ENST00000453199 643 ntTSL 3 BASIC5.78□□□□□ -1.48
SDC1P18827 AL450345.1-201ENST00000456118 311 ntTSL 3 BASIC5.78□□□□□ -1.48
SDC1P18827 AC068196.1-201ENST00000456895 833 ntTSL 3 BASIC5.78□□□□□ -1.48
SDC1P18827 AC002075.1-201ENST00000457396 676 ntBASIC5.78□□□□□ -1.48
SDC1P18827 AC018980.1-201ENST00000457848 862 ntTSL 3 BASIC5.78□□□□□ -1.48
SDC1P18827 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC5.78□□□□□ -1.48
SDC1P18827 CPHL1P-204ENST00000482639 584 ntTSL 5 BASIC5.78□□□□□ -1.48
SDC1P18827 TRBV5-2-201ENST00000489095 273 ntBASIC5.78□□□□□ -1.48
SDC1P18827 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC5.78□□□□□ -1.48
SDC1P18827 CCDC11P1-201ENST00000503137 1162 ntBASIC5.78□□□□□ -1.48
SDC1P18827 LINC01093-201ENST00000506479 634 ntTSL 3 BASIC5.78□□□□□ -1.48
SDC1P18827 TOMM22P4-201ENST00000511318 336 ntBASIC5.78□□□□□ -1.48
SDC1P18827 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC5.78□□□□□ -1.48
SDC1P18827 LINC02237-201ENST00000521753 805 ntTSL 3 BASIC5.78□□□□□ -1.48
SDC1P18827 IGHVIII-11-1-201ENST00000522733 267 ntBASIC5.78□□□□□ -1.48
SDC1P18827 CASP1P2-201ENST00000526830 1258 ntBASIC5.78□□□□□ -1.48
SDC1P18827 AP001893.3-201ENST00000532357 569 ntTSL 4 BASIC5.78□□□□□ -1.48
SDC1P18827 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC5.78□□□□□ -1.48
SDC1P18827 AC007066.2-202ENST00000566531 914 ntBASIC5.78□□□□□ -1.48
SDC1P18827 AC119403.2-201ENST00000590960 598 ntBASIC5.78□□□□□ -1.48
SDC1P18827 AC020915.3-201ENST00000595301 550 ntTSL 5 BASIC5.78□□□□□ -1.48
SDC1P18827 AC011891.2-201ENST00000604949 397 ntBASIC5.78□□□□□ -1.48
SDC1P18827 AC139792.1-201ENST00000607051 647 ntBASIC5.78□□□□□ -1.48
SDC1P18827 AL137246.1-201ENST00000607072 977 ntBASIC5.78□□□□□ -1.48
SDC1P18827 AC084816.1-204ENST00000628326 631 ntTSL 5 BASIC5.78□□□□□ -1.48
SDC1P18827 AF067845.4-201ENST00000633198 480 ntTSL 3 BASIC5.78□□□□□ -1.48
SDC1P18827 MAPK10-350ENST00000641777 965 ntBASIC5.78□□□□□ -1.48
SDC1P18827 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
SDC1P18827 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
SDC1P18827 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
SDC1P18827 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC5.78□□□□□ -1.48
SDC1P18827 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC5.78□□□□□ -1.48
SDC1P18827 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC5.77□□□□□ -1.48
SDC1P18827 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.48
SDC1P18827 ATP13A4-204ENST00000400270 1458 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
SDC1P18827 AC022325.1-201ENST00000502748 2199 ntBASIC5.77□□□□□ -1.49
SDC1P18827 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
SDC1P18827 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
SDC1P18827 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC5.77□□□□□ -1.49
SDC1P18827 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
SDC1P18827 AC119674.1-202ENST00000641333 1860 ntBASIC5.77□□□□□ -1.49
SDC1P18827 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
SDC1P18827 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SDC1P18827 OR7A10-202ENST00000641129 1847 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
SDC1P18827 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.49
SDC1P18827 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SDC1P18827 PPARG-204ENST00000397000 1122 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
SDC1P18827 AL139805.1-201ENST00000407837 289 ntBASIC5.77□□□□□ -1.49
SDC1P18827 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC5.77□□□□□ -1.49
SDC1P18827 AL139231.1-201ENST00000431001 312 ntTSL 3 BASIC5.77□□□□□ -1.49
SDC1P18827 RPL12P16-201ENST00000431098 498 ntBASIC5.77□□□□□ -1.49
SDC1P18827 CUBNP2-201ENST00000443534 1139 ntBASIC5.77□□□□□ -1.49
SDC1P18827 AL590004.3-202ENST00000445883 451 ntBASIC5.77□□□□□ -1.49
SDC1P18827 AC099670.1-201ENST00000455141 783 ntBASIC5.77□□□□□ -1.49
SDC1P18827 H3F3AP5-201ENST00000475267 429 ntBASIC5.77□□□□□ -1.49
SDC1P18827 LINC01322-202ENST00000494915 594 ntTSL 4 BASIC5.77□□□□□ -1.49
SDC1P18827 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
SDC1P18827 AC090150.1-201ENST00000521408 585 ntTSL 4 BASIC5.77□□□□□ -1.49
SDC1P18827 AC036111.2-201ENST00000533247 901 ntBASIC5.77□□□□□ -1.49
SDC1P18827 LRTOMT-218ENST00000541614 726 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
SDC1P18827 BMS1P16-201ENST00000556075 1147 ntBASIC5.77□□□□□ -1.49
SDC1P18827 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC5.77□□□□□ -1.49
SDC1P18827 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC5.77□□□□□ -1.49
SDC1P18827 AL133297.1-201ENST00000568149 404 ntTSL 2 BASIC5.77□□□□□ -1.49
SDC1P18827 AP005136.2-201ENST00000583253 1049 ntBASIC5.77□□□□□ -1.49
SDC1P18827 AC091132.1-201ENST00000588189 547 ntTSL 5 BASIC5.77□□□□□ -1.49
SDC1P18827 Z98949.1-228ENST00000595093 798 ntTSL 5 BASIC5.77□□□□□ -1.49
SDC1P18827 AP001267.4-201ENST00000602598 545 ntBASIC5.77□□□□□ -1.49
SDC1P18827 AC022001.1-201ENST00000605193 268 ntBASIC5.77□□□□□ -1.49
SDC1P18827 SGO1-AS1-206ENST00000635369 442 ntTSL 5 BASIC5.77□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 164.7 ms