Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC024884.1-201ENST00000620583 399 ntBASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 TM9SF4-202ENST00000398022 3978 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 RBM22-202ENST00000447771 1386 ntTSL 2 BASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 AL354854.1-201ENST00000455940 1363 ntBASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 EEF1A1P9-201ENST00000514975 1383 ntBASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 BNC1-202ENST00000569704 3169 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 ZNF559-ZNF177-202ENST00000446085 2470 ntTSL 5 BASIC6.14□□□□□ -1.43
CCDC3Q9BQI4 CACNB2-215ENST00000615785 3707 ntTSL 5 BASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 AC113146.2-201ENST00000560743 1961 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 COG2-209ENST00000534989 2963 ntTSL 2 BASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 MAP3K7CL-209ENST00000399947 2003 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 AL591135.1-201ENST00000401578 5914 ntBASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 ANKRD44-202ENST00000328737 3686 ntTSL 2 BASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 RNA5SP346-201ENST00000363541 121 ntBASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 RPS3P2-201ENST00000421346 701 ntBASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 AL669831.5-205ENST00000429505 441 ntTSL 3 BASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 AP000295.1-201ENST00000433395 1000 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 ATP5LP2-201ENST00000440646 311 ntBASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 AC104109.1-201ENST00000498563 436 ntBASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 AC025458.1-201ENST00000506046 166 ntBASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 PRMT5P1-201ENST00000514351 598 ntBASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 RN7SKP98-201ENST00000517070 156 ntBASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 IGKV1D-22-201ENST00000518953 324 ntBASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 TNFSF11-205ENST00000544862 818 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 ADAMTS7P4-205ENST00000560651 453 ntTSL 3 BASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 AC009087.1-201ENST00000561827 369 ntTSL 3 BASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 AL136359.1-201ENST00000625090 565 ntTSL 2 BASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 AC141930.3-201ENST00000640435 762 ntTSL 5 BASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 LINC01440-201ENST00000416190 1340 ntTSL 5 BASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 AC044839.1-206ENST00000635559 1324 ntTSL 5 BASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 CYP2G2P-201ENST00000594920 1485 ntBASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 MTCO1P28-201ENST00000574177 1528 ntBASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 AC079753.1-201ENST00000623243 3868 ntBASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 ERMARD-202ENST00000366772 2003 ntTSL 5 BASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC3Q9BQI4 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 AP2B1-215ENST00000616681 3267 ntTSL 2 BASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 AC068389.1-202ENST00000526470 3564 ntTSL 2 BASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 AC023490.2-201ENST00000359859 470 ntBASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 GJA9-202ENST00000360786 1901 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 RNA5SP333-201ENST00000363466 118 ntBASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 RNA5SP334-201ENST00000364825 118 ntBASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 PYHIN1-203ENST00000368140 2083 ntAPPRIS P4 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 MIR130B-202ENST00000385018 82 ntBASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 CCL7-202ENST00000394627 696 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 OSBPL6-207ENST00000409631 3273 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 CYCSP52-201ENST00000422857 310 ntBASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 NPM1P25-201ENST00000429734 854 ntBASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 EIF3EP1-201ENST00000433978 1316 ntBASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 AC074286.1-201ENST00000452002 544 ntTSL 4 BASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 AC016747.4-201ENST00000462959 1383 ntTSL 2 BASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 RPL7P51-201ENST00000490532 749 ntBASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 FBXL17-203ENST00000496714 3773 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 AC091917.2-201ENST00000505002 744 ntBASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 AC096736.3-201ENST00000510753 993 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 TPT1-AS1-206ENST00000519454 709 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 AC005832.1-201ENST00000544380 572 ntTSL 4 BASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 AC079950.1-201ENST00000551229 568 ntTSL 4 BASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 PWRN1-210ENST00000568045 1299 ntTSL 2 BASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 CLTC-210ENST00000579456 2301 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 PRELID3BP3-201ENST00000584963 545 ntBASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 AC073333.2-201ENST00000603589 769 ntBASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 LINC00484-208ENST00000609752 591 ntTSL 4 BASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC6.12□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms