Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 SNORA7A-201ENST00000384765 139 ntBASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 AL713923.1-201ENST00000414071 378 ntTSL 5 BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 CHL1-AS1-201ENST00000417612 913 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 RPL6-202ENST00000424576 1074 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 AL158832.1-201ENST00000429661 406 ntTSL 3 BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 LINC01393-202ENST00000435981 1187 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 LRTOMT-209ENST00000440313 253 ntTSL 3 BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 RAD1P2-201ENST00000446414 663 ntBASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 LINC01832-201ENST00000446520 553 ntTSL 4 BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 AC108463.2-201ENST00000451230 412 ntTSL 5 BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 AC010878.1-201ENST00000456500 1047 ntBASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 SULT1D1P-201ENST00000458020 882 ntBASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 RPL17P2-201ENST00000491913 451 ntBASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 AGGF1P3-201ENST00000493675 1213 ntBASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 SNORA58-201ENST00000505219 137 ntBASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 AC011396.2-201ENST00000515598 582 ntTSL 3 BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 INTS9-AS1-201ENST00000520055 548 ntTSL 5 BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 AC087272.1-201ENST00000523624 533 ntBASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 AP001803.1-201ENST00000525668 147 ntBASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 AC130364.2-201ENST00000528639 604 ntBASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 AC007537.1-201ENST00000539347 327 ntBASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 WBP2NL-210ENST00000543212 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 AC008126.1-201ENST00000549019 480 ntBASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 AL359232.1-202ENST00000556874 1206 ntTSL 2 BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 AC139099.3-202ENST00000574856 439 ntTSL 2 BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 PPIAL4A-201ENST00000577856 660 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 AC243756.1-201ENST00000584068 660 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 MIR4428-201ENST00000584884 73 ntBASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 AC073539.3-201ENST00000601905 386 ntTSL 3 BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 AC091193.1-201ENST00000604640 448 ntBASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 AC239809.3-203ENST00000611286 1050 ntTSL 5 BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 AC016911.1-201ENST00000613297 452 ntBASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 Six3os1_1.1-201ENST00000620900 87 ntBASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 AC087894.3-201ENST00000623682 349 ntBASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 AC073263.3-201ENST00000624449 858 ntBASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 PRKCH-228ENST00000640011 285 ntTSL 5 BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 AC022034.1-201ENST00000512867 2156 ntBASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 C8orf34-AS1-201ENST00000512294 1600 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 AC102941.1-201ENST00000567616 1537 ntBASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 TLR10-208ENST00000622002 3673 ntAPPRIS P1 TSL 3 BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 TLR10-207ENST00000613579 3801 ntAPPRIS P1 TSL 3 BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 SSX7-201ENST00000298181 1311 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 CIR1P2-201ENST00000514821 1342 ntBASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 TTLL5-217ENST00000556893 3071 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
PDLIM3Q53GG5 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC5.46□□□□□ -1.53
PDLIM3Q53GG5 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.46□□□□□ -1.53
PDLIM3Q53GG5 ARHGAP29-201ENST00000260526 6087 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
PDLIM3Q53GG5 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC5.46□□□□□ -1.54
PDLIM3Q53GG5 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
PDLIM3Q53GG5 AC011504.1-201ENST00000623331 4103 ntBASIC5.46□□□□□ -1.54
PDLIM3Q53GG5 MEPE-201ENST00000361056 1986 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.54
PDLIM3Q53GG5 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
PDLIM3Q53GG5 AC016907.2-203ENST00000455424 3563 ntTSL 3 BASIC5.46□□□□□ -1.54
PDLIM3Q53GG5 FAM32BP-201ENST00000344033 333 ntBASIC5.46□□□□□ -1.54
PDLIM3Q53GG5 AC083799.1-201ENST00000366451 910 ntBASIC5.46□□□□□ -1.54
PDLIM3Q53GG5 RNU6-891P-201ENST00000384280 111 ntBASIC5.46□□□□□ -1.54
PDLIM3Q53GG5 SMARCE1P6-201ENST00000398372 1216 ntBASIC5.46□□□□□ -1.54
PDLIM3Q53GG5 AL445213.1-201ENST00000412589 747 ntBASIC5.46□□□□□ -1.54
PDLIM3Q53GG5 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC5.46□□□□□ -1.54
PDLIM3Q53GG5 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC5.46□□□□□ -1.54
PDLIM3Q53GG5 SNRPEP5-201ENST00000425442 278 ntBASIC5.46□□□□□ -1.54
PDLIM3Q53GG5 HSFX3-201ENST00000431993 1264 ntAPPRIS P1 TSL 3 BASIC5.46□□□□□ -1.54
PDLIM3Q53GG5 GTF2A1-202ENST00000434192 1199 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
PDLIM3Q53GG5 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC5.46□□□□□ -1.54
PDLIM3Q53GG5 MTND3P4-201ENST00000453537 303 ntBASIC5.46□□□□□ -1.54
PDLIM3Q53GG5 RN7SL379P-201ENST00000479912 293 ntBASIC5.46□□□□□ -1.54
PDLIM3Q53GG5 TRBV8-1-201ENST00000481590 279 ntBASIC5.46□□□□□ -1.54
PDLIM3Q53GG5 AC091544.1-201ENST00000484702 348 ntBASIC5.46□□□□□ -1.54
PDLIM3Q53GG5 RN7SL101P-201ENST00000496350 279 ntBASIC5.46□□□□□ -1.54
PDLIM3Q53GG5 CSNK1A1P3-201ENST00000504105 330 ntBASIC5.46□□□□□ -1.54
PDLIM3Q53GG5 AC113367.2-201ENST00000505749 160 ntBASIC5.46□□□□□ -1.54
PDLIM3Q53GG5 AC018797.1-201ENST00000510791 255 ntBASIC5.46□□□□□ -1.54
PDLIM3Q53GG5 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC5.46□□□□□ -1.54
PDLIM3Q53GG5 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC5.46□□□□□ -1.54
PDLIM3Q53GG5 AC008708.1-201ENST00000517346 474 ntTSL 3 BASIC5.46□□□□□ -1.54
PDLIM3Q53GG5 AP003438.1-201ENST00000518704 435 ntTSL 3 BASIC5.46□□□□□ -1.54
PDLIM3Q53GG5 AP003548.1-201ENST00000523862 711 ntTSL 3 BASIC5.46□□□□□ -1.54
PDLIM3Q53GG5 AC021820.1-201ENST00000525564 808 ntBASIC5.46□□□□□ -1.54
PDLIM3Q53GG5 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC5.46□□□□□ -1.54
PDLIM3Q53GG5 PTER-205ENST00000535784 1203 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
PDLIM3Q53GG5 AC005832.1-201ENST00000544380 572 ntTSL 4 BASIC5.46□□□□□ -1.54
PDLIM3Q53GG5 MTND2P17-201ENST00000550281 688 ntBASIC5.46□□□□□ -1.54
PDLIM3Q53GG5 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC5.46□□□□□ -1.54
PDLIM3Q53GG5 AL845552.1-201ENST00000556820 323 ntBASIC5.46□□□□□ -1.54
PDLIM3Q53GG5 C14orf2-211ENST00000557040 472 ntAPPRIS P1 TSL 3 BASIC5.46□□□□□ -1.54
PDLIM3Q53GG5 MIR9-3HG-211ENST00000561037 779 ntTSL 5 BASIC5.46□□□□□ -1.54
PDLIM3Q53GG5 AC138811.2-201ENST00000567078 764 ntAPPRIS P1 TSL 3 BASIC5.46□□□□□ -1.54
PDLIM3Q53GG5 AC106785.4-201ENST00000569492 412 ntBASIC5.46□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 113.9 ms