Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AC006305.1-201ENST00000382897 2558 ntTSL 2 BASIC5.82□□□□□ -1.48
LIM2P55344 AP000547.3-204ENST00000588548 2523 ntBASIC5.82□□□□□ -1.48
LIM2P55344 AL121768.1-201ENST00000613917 2544 ntBASIC5.82□□□□□ -1.48
LIM2P55344 STT3A-214ENST00000531491 2160 ntTSL 2 BASIC5.82□□□□□ -1.48
LIM2P55344 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC5.82□□□□□ -1.48
LIM2P55344 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
LIM2P55344 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
LIM2P55344 ZNF669-202ENST00000366500 489 ntTSL 3 BASIC5.82□□□□□ -1.48
LIM2P55344 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC5.82□□□□□ -1.48
LIM2P55344 ZCCHC6-202ENST00000375947 611 ntTSL 5 BASIC5.82□□□□□ -1.48
LIM2P55344 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC5.82□□□□□ -1.48
LIM2P55344 LINC00434-201ENST00000423739 419 ntTSL 3 BASIC5.82□□□□□ -1.48
LIM2P55344 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC5.82□□□□□ -1.48
LIM2P55344 AL354707.3-201ENST00000427308 331 ntBASIC5.82□□□□□ -1.48
LIM2P55344 AC007099.1-201ENST00000451622 1185 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
LIM2P55344 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC5.82□□□□□ -1.48
LIM2P55344 AC104779.1-201ENST00000503557 441 ntTSL 3 BASIC5.82□□□□□ -1.48
LIM2P55344 RNA5SP434-201ENST00000516647 121 ntBASIC5.82□□□□□ -1.48
LIM2P55344 TPT1-AS1-207ENST00000520310 563 ntTSL 5 BASIC5.82□□□□□ -1.48
LIM2P55344 AC090150.1-201ENST00000521408 585 ntTSL 4 BASIC5.82□□□□□ -1.48
LIM2P55344 TMEM68-213ENST00000522576 826 ntTSL 2 BASIC5.82□□□□□ -1.48
LIM2P55344 AC021269.1-201ENST00000526860 705 ntBASIC5.82□□□□□ -1.48
LIM2P55344 GOLT1B-205ENST00000540141 1055 ntAPPRIS ALT1 TSL 4 BASIC5.82□□□□□ -1.48
LIM2P55344 AC069208.1-201ENST00000540811 676 ntTSL 4 BASIC5.82□□□□□ -1.48
LIM2P55344 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC5.82□□□□□ -1.48
LIM2P55344 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC5.82□□□□□ -1.48
LIM2P55344 MRPS21P8-201ENST00000569196 235 ntBASIC5.82□□□□□ -1.48
LIM2P55344 RNU4ATAC-201ENST00000580972 127 ntBASIC5.82□□□□□ -1.48
LIM2P55344 AC020916.2-201ENST00000591242 360 ntBASIC5.82□□□□□ -1.48
LIM2P55344 APOC2-205ENST00000592257 444 ntTSL 3 BASIC5.82□□□□□ -1.48
LIM2P55344 CKLF-CMTM1-206ENST00000616804 678 ntAPPRIS ALT2 TSL 2 BASIC5.82□□□□□ -1.48
LIM2P55344 MIR6806-201ENST00000622141 64 ntBASIC5.82□□□□□ -1.48
LIM2P55344 LINC00969-332ENST00000630874 738 ntTSL 5 BASIC5.82□□□□□ -1.48
LIM2P55344 AL596275.2-207ENST00000641188 675 ntBASIC5.82□□□□□ -1.48
LIM2P55344 CASC19-274ENST00000642018 970 ntBASIC5.82□□□□□ -1.48
LIM2P55344 KLHL2-210ENST00000538127 2907 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
LIM2P55344 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC5.82□□□□□ -1.48
LIM2P55344 AK3-201ENST00000359883 1536 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
LIM2P55344 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC5.82□□□□□ -1.48
LIM2P55344 AC079753.1-201ENST00000623243 3868 ntBASIC5.82□□□□□ -1.48
LIM2P55344 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
LIM2P55344 AC027575.3-201ENST00000583058 2747 ntBASIC5.82□□□□□ -1.48
LIM2P55344 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC5.82□□□□□ -1.48
LIM2P55344 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC5.82□□□□□ -1.48
LIM2P55344 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
LIM2P55344 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
LIM2P55344 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
LIM2P55344 CD96-201ENST00000283285 4324 ntAPPRIS P4 TSL 1 (best) BASIC5.81□□□□□ -1.48
LIM2P55344 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
LIM2P55344 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
LIM2P55344 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
LIM2P55344 NOX4-214ENST00000532825 2039 ntTSL 2 BASIC5.81□□□□□ -1.48
LIM2P55344 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC5.81□□□□□ -1.48
LIM2P55344 OR7A10-201ENST00000248058 930 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
LIM2P55344 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
LIM2P55344 RNA5SP110-201ENST00000362638 115 ntBASIC5.81□□□□□ -1.48
LIM2P55344 RNU1-59P-201ENST00000364829 162 ntBASIC5.81□□□□□ -1.48
LIM2P55344 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC5.81□□□□□ -1.48
LIM2P55344 MIR1275-201ENST00000408770 80 ntBASIC5.81□□□□□ -1.48
LIM2P55344 RNA5SP156-201ENST00000410250 110 ntBASIC5.81□□□□□ -1.48
LIM2P55344 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC5.81□□□□□ -1.48
LIM2P55344 PLA2G12AP2-201ENST00000424744 264 ntBASIC5.81□□□□□ -1.48
LIM2P55344 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC5.81□□□□□ -1.48
LIM2P55344 LINC01952-202ENST00000450016 281 ntTSL 3 BASIC5.81□□□□□ -1.48
LIM2P55344 AC112187.1-201ENST00000455837 479 ntBASIC5.81□□□□□ -1.48
LIM2P55344 AC104339.1-201ENST00000465478 348 ntBASIC5.81□□□□□ -1.48
LIM2P55344 AL355032.1-201ENST00000472981 438 ntBASIC5.81□□□□□ -1.48
LIM2P55344 NDUFB2-210ENST00000475276 539 ntTSL 4 BASIC5.81□□□□□ -1.48
LIM2P55344 AC114728.1-201ENST00000488289 483 ntBASIC5.81□□□□□ -1.48
LIM2P55344 AC021006.1-201ENST00000489849 553 ntBASIC5.81□□□□□ -1.48
LIM2P55344 KDELR2-206ENST00000490996 655 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
LIM2P55344 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC5.81□□□□□ -1.48
LIM2P55344 AC022509.3-201ENST00000535914 436 ntTSL 3 BASIC5.81□□□□□ -1.48
LIM2P55344 LINC02420-201ENST00000543387 741 ntTSL 5 BASIC5.81□□□□□ -1.48
LIM2P55344 CBLN2-208ENST00000584764 543 ntTSL 4 BASIC5.81□□□□□ -1.48
LIM2P55344 LINC01533-204ENST00000590719 435 ntTSL 5 BASIC5.81□□□□□ -1.48
LIM2P55344 AC141002.1-201ENST00000607025 279 ntBASIC5.81□□□□□ -1.48
LIM2P55344 U1.25-201ENST00000614085 162 ntBASIC5.81□□□□□ -1.48
LIM2P55344 RFPL4AP6-201ENST00000616792 846 ntBASIC5.81□□□□□ -1.48
LIM2P55344 U1.34-201ENST00000618578 162 ntBASIC5.81□□□□□ -1.48
LIM2P55344 U1.31-201ENST00000620022 160 ntBASIC5.81□□□□□ -1.48
LIM2P55344 AL683826.1-201ENST00000624104 627 ntBASIC5.81□□□□□ -1.48
LIM2P55344 ZNF101P1-201ENST00000435701 1720 ntBASIC5.81□□□□□ -1.48
LIM2P55344 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
LIM2P55344 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC5.81□□□□□ -1.48
LIM2P55344 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
LIM2P55344 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
LIM2P55344 AC010329.1-201ENST00000593903 8328 ntBASIC5.81□□□□□ -1.48
LIM2P55344 LINC00907-201ENST00000585627 3324 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
LIM2P55344 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
LIM2P55344 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC5.8□□□□□ -1.48
LIM2P55344 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
LIM2P55344 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
LIM2P55344 AC022325.1-201ENST00000502748 2199 ntBASIC5.8□□□□□ -1.48
LIM2P55344 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
LIM2P55344 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
LIM2P55344 GDA-209ENST00000545168 5362 ntTSL 2 BASIC5.8□□□□□ -1.48
LIM2P55344 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
LIM2P55344 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
LIM2P55344 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC5.8□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 148.1 ms