Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
HOXA1P49639 TAS2R42-201ENST00000334266 945 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
HOXA1P49639 RNA5SP114-201ENST00000363780 113 ntBASIC5.34□□□□□ -1.55
HOXA1P49639 MCTS1-202ENST00000371317 1018 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
HOXA1P49639 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.55
HOXA1P49639 AL050305.1-201ENST00000399993 1230 ntBASIC5.34□□□□□ -1.55
HOXA1P49639 FTH1P26-201ENST00000406512 701 ntBASIC5.34□□□□□ -1.55
HOXA1P49639 NACAP7-201ENST00000407371 609 ntBASIC5.34□□□□□ -1.55
HOXA1P49639 LINC01505-201ENST00000411451 686 ntTSL 3 BASIC5.34□□□□□ -1.55
HOXA1P49639 SNX18P13-201ENST00000412442 529 ntBASIC5.34□□□□□ -1.55
HOXA1P49639 EEF1B2P8-201ENST00000414101 671 ntBASIC5.34□□□□□ -1.55
HOXA1P49639 AP001468.1-201ENST00000415026 557 ntTSL 4 BASIC5.34□□□□□ -1.55
HOXA1P49639 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC5.34□□□□□ -1.55
HOXA1P49639 RPS7P12-201ENST00000422385 582 ntBASIC5.34□□□□□ -1.55
HOXA1P49639 RBMY2JP-201ENST00000425544 1059 ntBASIC5.34□□□□□ -1.55
HOXA1P49639 KCND3-AS1-202ENST00000427471 583 ntTSL 3 BASIC5.34□□□□□ -1.55
HOXA1P49639 BX276092.6-201ENST00000430476 250 ntBASIC5.34□□□□□ -1.55
HOXA1P49639 MTND4LP7-201ENST00000431728 294 ntBASIC5.34□□□□□ -1.55
HOXA1P49639 MIR181A1HG-202ENST00000432296 930 ntTSL 3 BASIC5.34□□□□□ -1.55
HOXA1P49639 TRMT2B-AS1-201ENST00000443801 205 ntTSL 5 BASIC5.34□□□□□ -1.55
HOXA1P49639 PCMTD1P3-201ENST00000451824 472 ntBASIC5.34□□□□□ -1.55
HOXA1P49639 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC5.34□□□□□ -1.55
HOXA1P49639 C1DP3-201ENST00000455013 423 ntBASIC5.34□□□□□ -1.55
HOXA1P49639 BX276092.8-201ENST00000455722 250 ntBASIC5.34□□□□□ -1.55
HOXA1P49639 AL096803.1-201ENST00000456921 1021 ntBASIC5.34□□□□□ -1.55
HOXA1P49639 AC099328.2-201ENST00000465347 455 ntTSL 3 BASIC5.34□□□□□ -1.55
HOXA1P49639 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
HOXA1P49639 RN7SL654P-201ENST00000479178 292 ntBASIC5.34□□□□□ -1.55
HOXA1P49639 AC068647.2-202ENST00000485020 390 ntTSL 3 BASIC5.34□□□□□ -1.55
HOXA1P49639 AL135933.1-201ENST00000498657 802 ntBASIC5.34□□□□□ -1.55
HOXA1P49639 AC110772.1-201ENST00000503037 474 ntTSL 3 BASIC5.34□□□□□ -1.55
HOXA1P49639 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC5.34□□□□□ -1.55
HOXA1P49639 SNORA70.17-201ENST00000516449 133 ntBASIC5.34□□□□□ -1.55
HOXA1P49639 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC5.34□□□□□ -1.55
HOXA1P49639 C14orf159-213ENST00000519019 834 ntTSL 3 BASIC5.34□□□□□ -1.55
HOXA1P49639 AC010609.1-201ENST00000519375 569 ntTSL 3 BASIC5.34□□□□□ -1.55
HOXA1P49639 IGHVIII-25-1-201ENST00000522143 241 ntBASIC5.34□□□□□ -1.55
HOXA1P49639 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
HOXA1P49639 SSU72P6-201ENST00000532644 488 ntBASIC5.34□□□□□ -1.55
HOXA1P49639 PCED1B-AS1-202ENST00000547600 523 ntTSL 3 BASIC5.34□□□□□ -1.55
HOXA1P49639 LINC02392-202ENST00000549313 574 ntTSL 4 BASIC5.34□□□□□ -1.55
HOXA1P49639 PCED1B-AS1-207ENST00000551432 522 ntTSL 5 BASIC5.34□□□□□ -1.55
HOXA1P49639 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC5.34□□□□□ -1.55
HOXA1P49639 AC009269.5-201ENST00000557800 755 ntTSL 3 BASIC5.34□□□□□ -1.55
HOXA1P49639 FAM30C-201ENST00000561158 410 ntBASIC5.34□□□□□ -1.55
HOXA1P49639 MIR1273F-201ENST00000580581 99 ntBASIC5.34□□□□□ -1.55
HOXA1P49639 Z99289.1-201ENST00000585373 807 ntTSL 3 BASIC5.34□□□□□ -1.55
HOXA1P49639 ZNF569-205ENST00000589833 762 ntTSL 3 BASIC5.34□□□□□ -1.55
HOXA1P49639 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC5.34□□□□□ -1.55
HOXA1P49639 BNIP3P39-201ENST00000601077 554 ntBASIC5.34□□□□□ -1.55
HOXA1P49639 AC092960.1-201ENST00000604762 351 ntBASIC5.34□□□□□ -1.55
HOXA1P49639 AC105148.1-201ENST00000604961 409 ntBASIC5.34□□□□□ -1.55
HOXA1P49639 RAB28P4-201ENST00000622233 665 ntBASIC5.34□□□□□ -1.55
HOXA1P49639 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
HOXA1P49639 OR8G5-202ENST00000641707 1156 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
HOXA1P49639 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
HOXA1P49639 AL161756.3-201ENST00000641216 2071 ntBASIC5.34□□□□□ -1.55
HOXA1P49639 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
HOXA1P49639 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
HOXA1P49639 NLN-202ENST00000502464 8354 ntTSL 5 BASIC5.34□□□□□ -1.55
HOXA1P49639 RPS6KA6-201ENST00000262752 2547 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
HOXA1P49639 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC5.34□□□□□ -1.56
HOXA1P49639 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.56
HOXA1P49639 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.56
HOXA1P49639 ROR1-AS1-201ENST00000412349 1574 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
HOXA1P49639 LCP2-206ENST00000521416 1599 ntTSL 2 BASIC5.33□□□□□ -1.56
HOXA1P49639 KLHL5-201ENST00000261425 3425 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
HOXA1P49639 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
HOXA1P49639 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC5.33□□□□□ -1.56
HOXA1P49639 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
HOXA1P49639 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC5.33□□□□□ -1.56
HOXA1P49639 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC5.33□□□□□ -1.56
HOXA1P49639 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
HOXA1P49639 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
HOXA1P49639 OR5AU1-201ENST00000304418 1199 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
HOXA1P49639 ATF3-201ENST00000336937 482 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
HOXA1P49639 SNORA38B-201ENST00000363524 131 ntBASIC5.33□□□□□ -1.56
HOXA1P49639 RNA5SP442-201ENST00000365050 107 ntBASIC5.33□□□□□ -1.56
HOXA1P49639 SNORA70.3-201ENST00000365075 132 ntBASIC5.33□□□□□ -1.56
HOXA1P49639 RNA5SP427-201ENST00000365323 119 ntBASIC5.33□□□□□ -1.56
HOXA1P49639 MIR205HG-201ENST00000366437 704 ntTSL 3 BASIC5.33□□□□□ -1.56
HOXA1P49639 RNU6-152P-201ENST00000384037 107 ntBASIC5.33□□□□□ -1.56
HOXA1P49639 AL050335.1-201ENST00000396909 869 ntBASIC5.33□□□□□ -1.56
HOXA1P49639 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
HOXA1P49639 RN7SKP296-201ENST00000411185 341 ntBASIC5.33□□□□□ -1.56
HOXA1P49639 AC084816.1-201ENST00000413794 565 ntTSL 4 BASIC5.33□□□□□ -1.56
HOXA1P49639 AL391869.1-201ENST00000414581 475 ntTSL 3 BASIC5.33□□□□□ -1.56
HOXA1P49639 SLC8A1-AS1-202ENST00000417875 344 ntTSL 2 BASIC5.33□□□□□ -1.56
HOXA1P49639 FAR1P1-201ENST00000427163 934 ntBASIC5.33□□□□□ -1.56
HOXA1P49639 CR391992.1-201ENST00000438601 394 ntBASIC5.33□□□□□ -1.56
HOXA1P49639 RPL6P24-201ENST00000445338 864 ntBASIC5.33□□□□□ -1.56
HOXA1P49639 AL512785.1-201ENST00000447899 517 ntTSL 3 BASIC5.33□□□□□ -1.56
HOXA1P49639 RN7SL492P-201ENST00000460700 295 ntBASIC5.33□□□□□ -1.56
HOXA1P49639 RPS4XP12-201ENST00000461747 709 ntBASIC5.33□□□□□ -1.56
HOXA1P49639 AC139769.1-201ENST00000471224 1001 ntTSL 3 BASIC5.33□□□□□ -1.56
HOXA1P49639 AL355032.1-201ENST00000472981 438 ntBASIC5.33□□□□□ -1.56
HOXA1P49639 PPP1R2P6-201ENST00000478565 588 ntBASIC5.33□□□□□ -1.56
HOXA1P49639 SSR1-206ENST00000479365 1118 ntTSL 5 BASIC5.33□□□□□ -1.56
HOXA1P49639 RN7SL518P-201ENST00000491887 280 ntBASIC5.33□□□□□ -1.56
HOXA1P49639 AC078788.1-201ENST00000498457 634 ntTSL 3 BASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms