Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC6.4□□□□□ -1.38
HTTP42858 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
HTTP42858 AFF2-205ENST00000370460 13746 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.38
HTTP42858 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
HTTP42858 CNTN2-201ENST00000331830 7999 ntAPPRIS P2 TSL 1 (best) BASIC6.4□□□□□ -1.38
HTTP42858 COL25A1-209ENST00000622134 4819 ntAPPRIS ALT2 TSL 5 BASIC6.4□□□□□ -1.38
HTTP42858 AC026951.1-201ENST00000559530 2459 ntBASIC6.4□□□□□ -1.38
HTTP42858 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
HTTP42858 ATP11A-212ENST00000487903 8858 ntAPPRIS P2 TSL 5 BASIC6.4□□□□□ -1.38
HTTP42858 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
HTTP42858 AC105235.1-201ENST00000623208 1816 ntBASIC6.4□□□□□ -1.39
HTTP42858 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC6.4□□□□□ -1.39
HTTP42858 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
HTTP42858 AC068538.1-201ENST00000376856 336 ntBASIC6.4□□□□□ -1.39
HTTP42858 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC6.4□□□□□ -1.39
HTTP42858 ZRANB2-AS1-202ENST00000450461 553 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
HTTP42858 AC026979.1-201ENST00000492525 396 ntBASIC6.4□□□□□ -1.39
HTTP42858 AP002336.3-201ENST00000526017 367 ntTSL 3 BASIC6.4□□□□□ -1.39
HTTP42858 CASC22-201ENST00000569713 386 ntTSL 5 BASIC6.4□□□□□ -1.39
HTTP42858 AC025574.2-201ENST00000615621 514 ntBASIC6.4□□□□□ -1.39
HTTP42858 AC009704.2-201ENST00000618739 483 ntBASIC6.4□□□□□ -1.39
HTTP42858 ARFGAP2-230ENST00000629231 213 ntTSL 5 BASIC6.4□□□□□ -1.39
HTTP42858 BCL2L13-203ENST00000355028 4458 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
HTTP42858 OPA3-201ENST00000263275 7828 ntAPPRIS P3 TSL 1 (best) BASIC6.4□□□□□ -1.39
HTTP42858 SPATA31D1-201ENST00000344803 4833 ntAPPRIS P1 TSL 2 BASIC6.4□□□□□ -1.39
HTTP42858 UBAP2-204ENST00000379238 4289 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.39
HTTP42858 SH3BP2-201ENST00000356331 9211 ntAPPRIS P3 TSL 1 (best) BASIC6.4□□□□□ -1.39
HTTP42858 GAPVD1-215ENST00000470056 8923 ntTSL 5 BASIC6.4□□□□□ -1.39
HTTP42858 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
HTTP42858 WDR19-201ENST00000399820 4520 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
HTTP42858 NBPF26-204ENST00000615145 2656 ntTSL 5 BASIC6.39□□□□□ -1.39
HTTP42858 NBPF14-209ENST00000620240 2656 ntTSL 5 BASIC6.39□□□□□ -1.39
HTTP42858 CORIN-211ENST00000610355 4696 ntTSL 5 BASIC6.39□□□□□ -1.39
HTTP42858 BEND3-201ENST00000369042 6200 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
HTTP42858 TENM3-204ENST00000511685 10896 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
HTTP42858 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
HTTP42858 GAPDHP42-201ENST00000406848 981 ntBASIC6.39□□□□□ -1.39
HTTP42858 COX6CP17-201ENST00000421389 185 ntBASIC6.39□□□□□ -1.39
HTTP42858 AC092647.3-201ENST00000443044 633 ntBASIC6.39□□□□□ -1.39
HTTP42858 OR5AN2P-201ENST00000534535 896 ntBASIC6.39□□□□□ -1.39
HTTP42858 TEX41-254ENST00000626394 423 ntTSL 5 BASIC6.39□□□□□ -1.39
HTTP42858 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
HTTP42858 CD28-201ENST00000324106 4812 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
HTTP42858 OR4Q3-202ENST00000642117 2165 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
HTTP42858 ANKFN1-201ENST00000318698 2426 ntAPPRIS P2 TSL 2 BASIC6.39□□□□□ -1.39
HTTP42858 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
HTTP42858 CPNE4-208ENST00000511604 2503 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
HTTP42858 AF131215.2-201ENST00000531549 1710 ntBASIC6.39□□□□□ -1.39
HTTP42858 IPO5-222ENST00000490680 3419 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
HTTP42858 GPR63-201ENST00000229955 5952 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
HTTP42858 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC6.39□□□□□ -1.39
HTTP42858 AC008072.1-201ENST00000434254 824 ntBASIC6.39□□□□□ -1.39
HTTP42858 AC073648.4-201ENST00000442655 781 ntBASIC6.39□□□□□ -1.39
HTTP42858 MGAT2P1-201ENST00000449718 797 ntBASIC6.39□□□□□ -1.39
HTTP42858 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC6.39□□□□□ -1.39
HTTP42858 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC6.39□□□□□ -1.39
HTTP42858 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC6.39□□□□□ -1.39
HTTP42858 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC6.39□□□□□ -1.39
HTTP42858 MYOM1-201ENST00000261606 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
HTTP42858 LMBR1-201ENST00000353442 7997 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
HTTP42858 AC244100.2-202ENST00000612584 3878 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
HTTP42858 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
HTTP42858 AC008555.2-202ENST00000601776 5302 ntTSL 2 BASIC6.39□□□□□ -1.39
HTTP42858 AC011493.1-201ENST00000596753 1632 ntBASIC6.39□□□□□ -1.39
HTTP42858 NRAP-201ENST00000359988 5580 ntAPPRIS P3 TSL 1 (best) BASIC6.39□□□□□ -1.39
HTTP42858 MUC6-201ENST00000421673 8006 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
HTTP42858 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC6.39□□□□□ -1.39
HTTP42858 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC6.39□□□□□ -1.39
HTTP42858 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
HTTP42858 ALG13-202ENST00000371979 2770 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
HTTP42858 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
HTTP42858 DROSHA-220ENST00000513349 4681 ntAPPRIS ALT2 TSL 1 (best) BASIC6.38□□□□□ -1.39
HTTP42858 POGZ-201ENST00000271715 6626 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.39
HTTP42858 AC010132.2-201ENST00000295493 1043 ntBASIC6.38□□□□□ -1.39
HTTP42858 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC6.38□□□□□ -1.39
HTTP42858 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC6.38□□□□□ -1.39
HTTP42858 PDCL3P4-201ENST00000489621 720 ntBASIC6.38□□□□□ -1.39
HTTP42858 SNORA70.11-201ENST00000515987 138 ntBASIC6.38□□□□□ -1.39
HTTP42858 SNORA70.13-201ENST00000516116 138 ntBASIC6.38□□□□□ -1.39
HTTP42858 RNU6-941P-201ENST00000516346 108 ntBASIC6.38□□□□□ -1.39
HTTP42858 Metazoa_SRP.207-201ENST00000612254 285 ntBASIC6.38□□□□□ -1.39
HTTP42858 uc_338.26-201ENST00000612659 160 ntBASIC6.38□□□□□ -1.39
HTTP42858 AC024255.1-201ENST00000614376 102 ntBASIC6.38□□□□□ -1.39
HTTP42858 AC109583.2-201ENST00000617367 129 ntBASIC6.38□□□□□ -1.39
HTTP42858 WBP1LP8-201ENST00000617401 327 ntBASIC6.38□□□□□ -1.39
HTTP42858 AC012254.5-201ENST00000623573 478 ntBASIC6.38□□□□□ -1.39
HTTP42858 SRCAP-202ENST00000395059 9126 ntTSL 2 BASIC6.38□□□□□ -1.39
HTTP42858 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC6.38□□□□□ -1.39
HTTP42858 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
HTTP42858 PBRM1-201ENST00000296302 5145 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
HTTP42858 KIF1B-201ENST00000263934 6816 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
HTTP42858 BDNF-217ENST00000533131 3878 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
HTTP42858 PTCH1-209ENST00000437951 8049 ntTSL 5 BASIC6.38□□□□□ -1.39
HTTP42858 SLC12A1-203ENST00000396577 4708 ntAPPRIS ALT1 TSL 5 BASIC6.38□□□□□ -1.39
HTTP42858 ZNF772-204ENST00000427512 5130 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
HTTP42858 FHIT-201ENST00000341848 174 ntTSL 3 BASIC6.38□□□□□ -1.39
HTTP42858 RNA5SP335-201ENST00000363817 110 ntBASIC6.38□□□□□ -1.39
HTTP42858 RMRPP5-201ENST00000411156 267 ntBASIC6.38□□□□□ -1.39
HTTP42858 AC093162.1-201ENST00000419682 124 ntBASIC6.38□□□□□ -1.39
HTTP42858 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC6.38□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 85.4 ms