Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RN7SKP59-201ENST00000410520 314 ntBASIC8.65□□□□□ -1.02
COL9A1P20849 ALDH7A1P4-201ENST00000412255 178 ntBASIC8.65□□□□□ -1.02
COL9A1P20849 AL139128.1-201ENST00000413921 941 ntBASIC8.65□□□□□ -1.02
COL9A1P20849 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC8.65□□□□□ -1.02
COL9A1P20849 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
COL9A1P20849 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC8.65□□□□□ -1.02
COL9A1P20849 GAPDHP51-201ENST00000426454 1000 ntBASIC8.65□□□□□ -1.02
COL9A1P20849 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
COL9A1P20849 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC8.65□□□□□ -1.02
COL9A1P20849 AC000362.1-201ENST00000433725 425 ntBASIC8.65□□□□□ -1.02
COL9A1P20849 AL138957.1-201ENST00000435156 342 ntTSL 3 BASIC8.65□□□□□ -1.02
COL9A1P20849 MTND2P29-201ENST00000438595 412 ntBASIC8.65□□□□□ -1.02
COL9A1P20849 AC023274.2-201ENST00000445264 521 ntBASIC8.65□□□□□ -1.02
COL9A1P20849 PPIAP32-201ENST00000449940 472 ntBASIC8.65□□□□□ -1.02
COL9A1P20849 AC063943.1-201ENST00000465434 453 ntBASIC8.65□□□□□ -1.02
COL9A1P20849 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC8.65□□□□□ -1.02
COL9A1P20849 AC012613.1-202ENST00000512647 424 ntTSL 3 BASIC8.65□□□□□ -1.02
COL9A1P20849 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC8.65□□□□□ -1.02
COL9A1P20849 AC022639.1-202ENST00000524360 581 ntTSL 4 BASIC8.65□□□□□ -1.02
COL9A1P20849 AC018653.2-201ENST00000540190 238 ntBASIC8.65□□□□□ -1.02
COL9A1P20849 KDM1B-203ENST00000546309 496 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
COL9A1P20849 LINC02134-201ENST00000562980 557 ntTSL 5 BASIC8.65□□□□□ -1.02
COL9A1P20849 AC007998.3-202ENST00000591141 697 ntTSL 3 BASIC8.65□□□□□ -1.02
COL9A1P20849 CTHRC1P1-201ENST00000605383 469 ntBASIC8.65□□□□□ -1.02
COL9A1P20849 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC8.65□□□□□ -1.02
COL9A1P20849 CLEC4M-201ENST00000248228 1865 ntAPPRIS ALT2 TSL 5 BASIC8.65□□□□□ -1.02
COL9A1P20849 FANCM-202ENST00000542564 6167 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
COL9A1P20849 SHTN1-207ENST00000615301 6730 ntAPPRIS P3 TSL 1 (best) BASIC8.65□□□□□ -1.02
COL9A1P20849 IL5RA-203ENST00000383846 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC8.65□□□□□ -1.02
COL9A1P20849 AL390036.1-202ENST00000634635 2439 ntTSL 5 BASIC8.65□□□□□ -1.02
COL9A1P20849 SWT1-202ENST00000367501 3001 ntAPPRIS P1 TSL 2 BASIC8.65□□□□□ -1.02
COL9A1P20849 IFI44-201ENST00000370747 1687 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.03
COL9A1P20849 AL451074.2-201ENST00000423121 2150 ntTSL 2 BASIC8.65□□□□□ -1.03
COL9A1P20849 LINC00994-201ENST00000485805 2129 ntTSL 2 BASIC8.65□□□□□ -1.03
COL9A1P20849 ANKRD55-203ENST00000504958 2139 ntTSL 5 BASIC8.65□□□□□ -1.03
COL9A1P20849 ZNF682-202ENST00000397162 3164 ntTSL 4 BASIC8.65□□□□□ -1.03
COL9A1P20849 KDM4C-202ENST00000381309 4655 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.03
COL9A1P20849 UAP1-202ENST00000367924 2066 ntAPPRIS ALT1 TSL 5 BASIC8.65□□□□□ -1.03
COL9A1P20849 LINC01822-201ENST00000435682 2098 ntTSL 2 BASIC8.65□□□□□ -1.03
COL9A1P20849 RNF146-215ENST00000616343 2077 ntAPPRIS ALT1 TSL 5 BASIC8.65□□□□□ -1.03
COL9A1P20849 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
COL9A1P20849 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
COL9A1P20849 TTC23-202ENST00000394129 2505 ntAPPRIS ALT2 TSL 2 BASIC8.64□□□□□ -1.03
COL9A1P20849 WRAP53-201ENST00000316024 4011 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
COL9A1P20849 RAPGEF5-212ENST00000620335 5506 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
COL9A1P20849 AC008938.1-201ENST00000566929 6510 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
COL9A1P20849 TMCC1-201ENST00000393238 5992 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
COL9A1P20849 FREM1-203ENST00000380894 2481 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
COL9A1P20849 MCTP2-203ENST00000451018 2472 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
COL9A1P20849 AC020549.1-201ENST00000536916 1440 ntBASIC8.64□□□□□ -1.03
COL9A1P20849 XDH-201ENST00000379416 5688 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
COL9A1P20849 AL353583.1-201ENST00000624195 1855 ntBASIC8.64□□□□□ -1.03
COL9A1P20849 STAG3-202ENST00000394018 4163 ntAPPRIS ALT2 TSL 2 BASIC8.64□□□□□ -1.03
COL9A1P20849 NTRK3-221ENST00000629765 2714 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
COL9A1P20849 TNPO3-205ENST00000627585 4514 ntTSL 2 BASIC8.64□□□□□ -1.03
COL9A1P20849 OR2B11-203ENST00000641527 4545 ntAPPRIS P1 BASIC8.64□□□□□ -1.03
COL9A1P20849 REV3L-202ENST00000368802 10701 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
COL9A1P20849 PCDHGA5-202ENST00000611914 3552 ntAPPRIS P1 BASIC8.64□□□□□ -1.03
COL9A1P20849 AK2-215ENST00000629371 3576 ntTSL 3 BASIC8.64□□□□□ -1.03
COL9A1P20849 PRR27-201ENST00000344526 3127 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
COL9A1P20849 PINK1-AS-201ENST00000451424 4443 ntTSL 2 BASIC8.64□□□□□ -1.03
COL9A1P20849 ADD2-201ENST00000264436 9267 ntAPPRIS P4 TSL 1 (best) BASIC8.64□□□□□ -1.03
COL9A1P20849 CLDN18-201ENST00000183605 3520 ntAPPRIS P3 TSL 1 (best) BASIC8.64□□□□□ -1.03
COL9A1P20849 GULP1-202ENST00000409580 3544 ntAPPRIS P3 TSL 2 BASIC8.64□□□□□ -1.03
COL9A1P20849 RNU6-510P-201ENST00000391239 108 ntBASIC8.64□□□□□ -1.03
COL9A1P20849 RPS27-202ENST00000392558 625 ntTSL 2 BASIC8.64□□□□□ -1.03
COL9A1P20849 AL512363.1-201ENST00000425089 586 ntTSL 2 BASIC8.64□□□□□ -1.03
COL9A1P20849 AL445669.1-201ENST00000426743 755 ntBASIC8.64□□□□□ -1.03
COL9A1P20849 GAPDHP19-201ENST00000431768 1005 ntBASIC8.64□□□□□ -1.03
COL9A1P20849 RPS10P14-201ENST00000440748 502 ntBASIC8.64□□□□□ -1.03
COL9A1P20849 KF459542.1-201ENST00000450908 553 ntBASIC8.64□□□□□ -1.03
COL9A1P20849 AC073594.1-201ENST00000462065 364 ntBASIC8.64□□□□□ -1.03
COL9A1P20849 RN7SL761P-201ENST00000463259 278 ntBASIC8.64□□□□□ -1.03
COL9A1P20849 C2orf74-204ENST00000464909 726 ntAPPRIS P2 TSL 2 BASIC8.64□□□□□ -1.03
COL9A1P20849 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
COL9A1P20849 HMGN2P25-201ENST00000486956 268 ntBASIC8.64□□□□□ -1.03
COL9A1P20849 RN7SKP70-201ENST00000516655 271 ntBASIC8.64□□□□□ -1.03
COL9A1P20849 IGHVII-30-1-201ENST00000522218 301 ntBASIC8.64□□□□□ -1.03
COL9A1P20849 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC8.64□□□□□ -1.03
COL9A1P20849 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC8.64□□□□□ -1.03
COL9A1P20849 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC8.64□□□□□ -1.03
COL9A1P20849 AC006270.2-201ENST00000578523 652 ntBASIC8.64□□□□□ -1.03
COL9A1P20849 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC8.64□□□□□ -1.03
COL9A1P20849 AC087393.3-201ENST00000584971 166 ntBASIC8.64□□□□□ -1.03
COL9A1P20849 AC011444.4-201ENST00000586415 418 ntBASIC8.64□□□□□ -1.03
COL9A1P20849 DPPA3P3-201ENST00000603842 430 ntBASIC8.64□□□□□ -1.03
COL9A1P20849 LINC02112-203ENST00000606169 419 ntTSL 5 BASIC8.64□□□□□ -1.03
COL9A1P20849 RN7SL840P-201ENST00000606883 284 ntBASIC8.64□□□□□ -1.03
COL9A1P20849 PART1_3.1-201ENST00000619680 131 ntBASIC8.64□□□□□ -1.03
COL9A1P20849 AC091925.1-201ENST00000623204 462 ntBASIC8.64□□□□□ -1.03
COL9A1P20849 AL683826.1-201ENST00000624104 627 ntBASIC8.64□□□□□ -1.03
COL9A1P20849 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC8.64□□□□□ -1.03
COL9A1P20849 CASP12-203ENST00000422698 1685 ntAPPRIS ALT2 TSL 5 BASIC8.64□□□□□ -1.03
COL9A1P20849 SATB1-204ENST00000417717 4589 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
COL9A1P20849 CACNA2D4-223ENST00000588077 3311 ntAPPRIS ALT2 TSL 5 BASIC8.64□□□□□ -1.03
COL9A1P20849 HCG18-242ENST00000602319 3342 ntBASIC8.64□□□□□ -1.03
COL9A1P20849 NDUFS1-203ENST00000432169 2080 ntTSL 2 BASIC8.64□□□□□ -1.03
COL9A1P20849 CDY7P-201ENST00000429883 1604 ntBASIC8.64□□□□□ -1.03
COL9A1P20849 ZNF322-208ENST00000622479 4882 ntAPPRIS P1 TSL 4 BASIC8.64□□□□□ -1.03
COL9A1P20849 LCP2-210ENST00000628092 2421 ntAPPRIS ALT1 TSL 5 BASIC8.64□□□□□ -1.03
Retrieved 100 of 98,524 protein–RNA pairs in 194.6 ms