Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 C1orf198-202ENST00000427697 3666 ntAPPRIS ALT2 TSL 2 BASIC8.4□□□□□ -1.06
HLA-CQ95604 GOLGA8B-201ENST00000342314 4335 ntAPPRIS P2 TSL 1 (best) BASIC8.4□□□□□ -1.06
HLA-CQ95604 AP003716.1-202ENST00000511677 3387 ntTSL 2 BASIC8.4□□□□□ -1.07
HLA-CQ95604 SOX5-215ENST00000545921 2589 ntAPPRIS ALT1 TSL 2 BASIC8.4□□□□□ -1.07
HLA-CQ95604 ARMC3-202ENST00000376528 3258 ntTSL 2 BASIC8.4□□□□□ -1.07
HLA-CQ95604 CYP4A22-203ENST00000371891 2535 ntAPPRIS P2 TSL 1 (best) BASIC8.4□□□□□ -1.07
HLA-CQ95604 LINC00284-202ENST00000439707 2521 ntTSL 5 BASIC8.4□□□□□ -1.07
HLA-CQ95604 LINC02210-213ENST00000591271 9678 ntTSL 3 BASIC8.4□□□□□ -1.07
HLA-CQ95604 TMC5-208ENST00000564959 2434 ntTSL 2 BASIC8.4□□□□□ -1.07
HLA-CQ95604 GLYAT-202ENST00000344743 1735 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.07
HLA-CQ95604 CS-212ENST00000548567 3057 ntTSL 1 (best) BASIC8.4□□□□□ -1.07
HLA-CQ95604 IGSF1-206ENST00000370910 4406 ntAPPRIS ALT2 TSL 1 (best) BASIC8.4□□□□□ -1.07
HLA-CQ95604 TCF4-208ENST00000543082 2399 ntTSL 1 (best) BASIC8.4□□□□□ -1.07
HLA-CQ95604 SLC22A9-201ENST00000279178 2343 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.07
HLA-CQ95604 GPLD1-201ENST00000230036 3489 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
HLA-CQ95604 RAD51B-212ENST00000488612 1550 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
HLA-CQ95604 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
HLA-CQ95604 PBLD-202ENST00000309049 2165 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
HLA-CQ95604 CYP4Z2P-201ENST00000423332 1512 ntBASIC8.39□□□□□ -1.07
HLA-CQ95604 CASC19-243ENST00000641588 1546 ntBASIC8.39□□□□□ -1.07
HLA-CQ95604 ZSCAN23-201ENST00000289788 3126 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
HLA-CQ95604 NPR3-202ENST00000326958 6380 ntTSL 2 BASIC8.39□□□□□ -1.07
HLA-CQ95604 TTC28-208ENST00000612946 11274 ntAPPRIS ALT2 TSL 5 BASIC8.39□□□□□ -1.07
HLA-CQ95604 AP002748.4-201ENST00000419755 3547 ntAPPRIS P1 TSL 2 BASIC8.39□□□□□ -1.07
HLA-CQ95604 OGDH-207ENST00000449767 3479 ntAPPRIS ALT1 TSL 2 BASIC8.39□□□□□ -1.07
HLA-CQ95604 GTF3C2-202ENST00000359541 3992 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
HLA-CQ95604 MS4A6A-208ENST00000528851 1806 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
HLA-CQ95604 MCTP1-201ENST00000312216 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC8.39□□□□□ -1.07
HLA-CQ95604 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC8.39□□□□□ -1.07
HLA-CQ95604 BDNF-AS-201ENST00000499008 2324 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
HLA-CQ95604 AL139352.1-201ENST00000255183 1001 ntTSL 2 BASIC8.39□□□□□ -1.07
HLA-CQ95604 PDXDC1-201ENST00000325823 1113 ntTSL 5 BASIC8.39□□□□□ -1.07
HLA-CQ95604 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC8.39□□□□□ -1.07
HLA-CQ95604 RNU1-16P-201ENST00000365477 164 ntBASIC8.39□□□□□ -1.07
HLA-CQ95604 MTIF3-202ENST00000381120 1005 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
HLA-CQ95604 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
HLA-CQ95604 MIR525-201ENST00000384978 85 ntBASIC8.39□□□□□ -1.07
HLA-CQ95604 CALM2P3-201ENST00000400429 449 ntBASIC8.39□□□□□ -1.07
HLA-CQ95604 GSTA9P-201ENST00000406231 611 ntBASIC8.39□□□□□ -1.07
HLA-CQ95604 RPL36A-HNRNPH2-201ENST00000409170 562 ntAPPRIS P1 TSL 4 BASIC8.39□□□□□ -1.07
HLA-CQ95604 RPS3AP9-201ENST00000417027 792 ntBASIC8.39□□□□□ -1.07
HLA-CQ95604 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC8.39□□□□□ -1.07
HLA-CQ95604 AC069157.1-201ENST00000421749 137 ntBASIC8.39□□□□□ -1.07
HLA-CQ95604 MTCO1P20-201ENST00000425366 358 ntBASIC8.39□□□□□ -1.07
HLA-CQ95604 AL035410.1-201ENST00000427409 427 ntBASIC8.39□□□□□ -1.07
HLA-CQ95604 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
HLA-CQ95604 FGF12-202ENST00000430714 603 ntTSL 2 BASIC8.39□□□□□ -1.07
HLA-CQ95604 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC8.39□□□□□ -1.07
HLA-CQ95604 CALM1P1-201ENST00000442082 433 ntBASIC8.39□□□□□ -1.07
HLA-CQ95604 AL022238.1-201ENST00000442557 355 ntBASIC8.39□□□□□ -1.07
HLA-CQ95604 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC8.39□□□□□ -1.07
HLA-CQ95604 AL590326.1-201ENST00000460857 334 ntBASIC8.39□□□□□ -1.07
HLA-CQ95604 RPL34P33-201ENST00000486062 334 ntBASIC8.39□□□□□ -1.07
HLA-CQ95604 SNRPD2P1-201ENST00000489253 354 ntBASIC8.39□□□□□ -1.07
HLA-CQ95604 LINC01182-201ENST00000503532 582 ntTSL 4 BASIC8.39□□□□□ -1.07
HLA-CQ95604 AC021678.1-201ENST00000505195 936 ntBASIC8.39□□□□□ -1.07
HLA-CQ95604 AC022447.3-201ENST00000506865 495 ntBASIC8.39□□□□□ -1.07
HLA-CQ95604 PANCR-202ENST00000513690 448 ntTSL 2 BASIC8.39□□□□□ -1.07
HLA-CQ95604 EGLN3P1-201ENST00000541727 720 ntBASIC8.39□□□□□ -1.07
HLA-CQ95604 OR6C73P-201ENST00000546432 358 ntBASIC8.39□□□□□ -1.07
HLA-CQ95604 AC009779.4-201ENST00000554248 611 ntBASIC8.39□□□□□ -1.07
HLA-CQ95604 FAM30C-201ENST00000561158 410 ntBASIC8.39□□□□□ -1.07
HLA-CQ95604 MIR4795-201ENST00000584182 89 ntBASIC8.39□□□□□ -1.07
HLA-CQ95604 LINC01435-212ENST00000601212 742 ntTSL 5 BASIC8.39□□□□□ -1.07
HLA-CQ95604 AC011453.2-201ENST00000603737 729 ntBASIC8.39□□□□□ -1.07
HLA-CQ95604 AC007363.1-201ENST00000604736 620 ntBASIC8.39□□□□□ -1.07
HLA-CQ95604 HNF4A-AS1-202ENST00000609152 413 ntTSL 3 BASIC8.39□□□□□ -1.07
HLA-CQ95604 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC8.39□□□□□ -1.07
HLA-CQ95604 IGHV3-54-201ENST00000622166 353 ntBASIC8.39□□□□□ -1.07
HLA-CQ95604 AL160413.1-201ENST00000622780 310 ntBASIC8.39□□□□□ -1.07
HLA-CQ95604 AC022784.8-201ENST00000623764 559 ntBASIC8.39□□□□□ -1.07
HLA-CQ95604 AL513321.2-202ENST00000634479 921 ntTSL 5 BASIC8.39□□□□□ -1.07
HLA-CQ95604 MIR1321-201ENST00000637766 79 ntBASIC8.39□□□□□ -1.07
HLA-CQ95604 AL161756.1-201ENST00000555861 1751 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
HLA-CQ95604 HS3ST5-202ENST00000411826 2744 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
HLA-CQ95604 PYHIN1-202ENST00000368138 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC8.39□□□□□ -1.07
HLA-CQ95604 GSTM2-204ENST00000369831 1730 ntTSL 2 BASIC8.39□□□□□ -1.07
HLA-CQ95604 SLC33A1-202ENST00000392845 9217 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
HLA-CQ95604 ADGRG6-201ENST00000230173 7026 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
HLA-CQ95604 GTF3C3-201ENST00000263956 4282 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
HLA-CQ95604 FREM1-203ENST00000380894 2481 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
HLA-CQ95604 ZNF334-206ENST00000625284 2495 ntAPPRIS ALT2 TSL 2 BASIC8.39□□□□□ -1.07
HLA-CQ95604 MTF2-201ENST00000370298 4125 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
HLA-CQ95604 CPB2-AS1-204ENST00000606991 3218 ntTSL 2 BASIC8.39□□□□□ -1.07
HLA-CQ95604 IQGAP1-214ENST00000560738 3602 ntTSL 5 BASIC8.39□□□□□ -1.07
HLA-CQ95604 SETD7-207ENST00000608958 5281 ntTSL 5 BASIC8.38□□□□□ -1.07
HLA-CQ95604 AC103760.1-201ENST00000521326 1486 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
HLA-CQ95604 AC020661.5-201ENST00000624853 1854 ntBASIC8.38□□□□□ -1.07
HLA-CQ95604 SCNN1G-201ENST00000300061 3507 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
HLA-CQ95604 AC061975.7-201ENST00000592016 2692 ntBASIC8.38□□□□□ -1.07
HLA-CQ95604 LIMCH1-218ENST00000513024 5129 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
HLA-CQ95604 MLIP-201ENST00000274897 1815 ntAPPRIS P3 TSL 2 BASIC8.38□□□□□ -1.07
HLA-CQ95604 EP400-204ENST00000389561 12317 ntAPPRIS P1 TSL 5 BASIC8.38□□□□□ -1.07
HLA-CQ95604 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
HLA-CQ95604 BTBD3-202ENST00000378226 4904 ntAPPRIS P4 TSL 1 (best) BASIC8.38□□□□□ -1.07
HLA-CQ95604 WDR47-205ENST00000400794 4134 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
HLA-CQ95604 MTND4P27-201ENST00000450813 1354 ntBASIC8.38□□□□□ -1.07
HLA-CQ95604 CCL22-201ENST00000219235 2929 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
HLA-CQ95604 RP1-206ENST00000636932 3649 ntTSL 5 BASIC8.38□□□□□ -1.07
HLA-CQ95604 UNC5D-206ENST00000453357 7002 ntAPPRIS ALT2 TSL 1 (best) BASIC8.38□□□□□ -1.07
Retrieved 100 of 98,524 protein–RNA pairs in 85.6 ms