Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 TXNP4-201ENST00000575018 310 ntBASIC7.29□□□□□ -1.24
BRCA1P38398 OR11H2-202ENST00000641517 1085 ntBASIC7.29□□□□□ -1.24
BRCA1P38398 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
BRCA1P38398 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC7.29□□□□□ -1.24
BRCA1P38398 ZNF561-204ENST00000424629 4419 ntTSL 2 BASIC7.29□□□□□ -1.24
BRCA1P38398 ZNF226-213ENST00000588883 5972 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
BRCA1P38398 DLG1-202ENST00000357674 4931 ntAPPRIS ALT1 TSL 1 (best) BASIC7.29□□□□□ -1.24
BRCA1P38398 GART-204ENST00000381831 3490 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
BRCA1P38398 C2CD5-202ENST00000396028 3463 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
BRCA1P38398 C2CD5-203ENST00000446597 3490 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
BRCA1P38398 C2CD5-206ENST00000536386 3496 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
BRCA1P38398 EHBP1-203ENST00000405289 3591 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
BRCA1P38398 ROBO2-201ENST00000332191 5437 ntAPPRIS ALT2 TSL 5 BASIC7.29□□□□□ -1.24
BRCA1P38398 AP001541.1-201ENST00000623322 1904 ntBASIC7.29□□□□□ -1.24
BRCA1P38398 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
BRCA1P38398 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
BRCA1P38398 NAT1-206ENST00000518029 2162 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
BRCA1P38398 LINC-ROR-201ENST00000553704 2603 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
BRCA1P38398 OR2M1P-201ENST00000318104 951 ntBASIC7.28□□□□□ -1.24
BRCA1P38398 SELENOWP1-201ENST00000322792 252 ntBASIC7.28□□□□□ -1.24
BRCA1P38398 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
BRCA1P38398 RNU1-106P-201ENST00000384382 164 ntBASIC7.28□□□□□ -1.24
BRCA1P38398 MIR223-201ENST00000385204 110 ntBASIC7.28□□□□□ -1.24
BRCA1P38398 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC7.28□□□□□ -1.24
BRCA1P38398 AL590762.4-201ENST00000425885 253 ntBASIC7.28□□□□□ -1.24
BRCA1P38398 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC7.28□□□□□ -1.24
BRCA1P38398 VN1R54P-201ENST00000435210 1049 ntBASIC7.28□□□□□ -1.24
BRCA1P38398 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC7.28□□□□□ -1.24
BRCA1P38398 SAMD3-204ENST00000439090 2093 ntAPPRIS P1 TSL 2 BASIC7.28□□□□□ -1.24
BRCA1P38398 AC004453.1-201ENST00000487895 408 ntBASIC7.28□□□□□ -1.24
BRCA1P38398 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC7.28□□□□□ -1.24
BRCA1P38398 NOP10-202ENST00000557912 436 ntTSL 2 BASIC7.28□□□□□ -1.24
BRCA1P38398 AC087516.1-201ENST00000561236 2428 ntBASIC7.28□□□□□ -1.24
BRCA1P38398 SUGT1P3-202ENST00000604259 383 ntBASIC7.28□□□□□ -1.24
BRCA1P38398 AC011815.2-201ENST00000618230 2021 ntBASIC7.28□□□□□ -1.24
BRCA1P38398 OR2T2-203ENST00000642130 3331 ntAPPRIS P1 BASIC7.28□□□□□ -1.24
BRCA1P38398 PMFBP1-202ENST00000355636 3501 ntAPPRIS ALT2 TSL 5 BASIC7.28□□□□□ -1.24
BRCA1P38398 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC7.28□□□□□ -1.24
BRCA1P38398 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
BRCA1P38398 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
BRCA1P38398 ERC1-203ENST00000360905 5789 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
BRCA1P38398 LEPR-203ENST00000371058 2805 ntTSL 5 BASIC7.28□□□□□ -1.24
BRCA1P38398 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
BRCA1P38398 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC7.28□□□□□ -1.24
BRCA1P38398 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC7.28□□□□□ -1.24
BRCA1P38398 CPM-201ENST00000338356 6636 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
BRCA1P38398 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC7.28□□□□□ -1.24
BRCA1P38398 F9-202ENST00000394090 1272 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
BRCA1P38398 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC7.28□□□□□ -1.24
BRCA1P38398 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC7.28□□□□□ -1.24
BRCA1P38398 FAR2P1-206ENST00000449736 709 ntBASIC7.28□□□□□ -1.24
BRCA1P38398 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC7.28□□□□□ -1.24
BRCA1P38398 AC073594.1-201ENST00000462065 364 ntBASIC7.28□□□□□ -1.24
BRCA1P38398 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC7.28□□□□□ -1.24
BRCA1P38398 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC7.28□□□□□ -1.24
BRCA1P38398 AC090458.1-202ENST00000530387 462 ntTSL 5 BASIC7.28□□□□□ -1.24
BRCA1P38398 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC7.28□□□□□ -1.24
BRCA1P38398 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC7.28□□□□□ -1.24
BRCA1P38398 ELOCP28-201ENST00000590044 317 ntBASIC7.28□□□□□ -1.24
BRCA1P38398 FKBP1AP1-201ENST00000594588 318 ntBASIC7.28□□□□□ -1.24
BRCA1P38398 ZNF37A-202ENST00000361085 8738 ntAPPRIS P1 TSL 2 BASIC7.28□□□□□ -1.24
BRCA1P38398 EYA3-203ENST00000373871 6085 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
BRCA1P38398 MEPE-203ENST00000424957 2022 ntAPPRIS P3 TSL 2 BASIC7.27□□□□□ -1.24
BRCA1P38398 LINC02177-201ENST00000564305 5298 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
BRCA1P38398 IPO5-222ENST00000490680 3419 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
BRCA1P38398 F13A1-201ENST00000264870 3999 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
BRCA1P38398 TRPS1-212ENST00000640765 9514 ntTSL 2 BASIC7.27□□□□□ -1.25
BRCA1P38398 MKKS-201ENST00000347364 6714 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
BRCA1P38398 MRE11P1-201ENST00000464884 2127 ntBASIC7.27□□□□□ -1.25
BRCA1P38398 SVIL-202ENST00000375398 8201 ntAPPRIS ALT2 TSL 5 BASIC7.27□□□□□ -1.25
BRCA1P38398 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC7.27□□□□□ -1.25
BRCA1P38398 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC7.27□□□□□ -1.25
BRCA1P38398 MRPL53P1-201ENST00000414323 319 ntBASIC7.27□□□□□ -1.25
BRCA1P38398 AL807761.1-201ENST00000417622 171 ntBASIC7.27□□□□□ -1.25
BRCA1P38398 AL133173.1-201ENST00000423458 397 ntBASIC7.27□□□□□ -1.25
BRCA1P38398 OR5W1P-201ENST00000423705 938 ntBASIC7.27□□□□□ -1.25
BRCA1P38398 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC7.27□□□□□ -1.25
BRCA1P38398 AC019185.1-201ENST00000442718 389 ntBASIC7.27□□□□□ -1.25
BRCA1P38398 AC092967.1-201ENST00000449016 481 ntBASIC7.27□□□□□ -1.25
BRCA1P38398 RPEP1-201ENST00000504507 658 ntBASIC7.27□□□□□ -1.25
BRCA1P38398 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC7.27□□□□□ -1.25
BRCA1P38398 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC7.27□□□□□ -1.25
BRCA1P38398 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC7.27□□□□□ -1.25
BRCA1P38398 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC7.27□□□□□ -1.25
BRCA1P38398 AC096996.1-201ENST00000563813 325 ntBASIC7.27□□□□□ -1.25
BRCA1P38398 AC015818.6-201ENST00000584274 634 ntBASIC7.27□□□□□ -1.25
BRCA1P38398 AC145423.1-201ENST00000605712 336 ntBASIC7.27□□□□□ -1.25
BRCA1P38398 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC7.27□□□□□ -1.25
BRCA1P38398 MRPS23-201ENST00000313608 5621 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
BRCA1P38398 NXF2B-204ENST00000618302 2884 ntAPPRIS P1 TSL 2 BASIC7.27□□□□□ -1.25
BRCA1P38398 ARHGAP32-202ENST00000392657 6556 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
BRCA1P38398 AC036214.3-201ENST00000522938 1527 ntAPPRIS P1 TSL 2 BASIC7.27□□□□□ -1.25
BRCA1P38398 MYO5C-201ENST00000261839 6971 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
BRCA1P38398 FGD4-202ENST00000427716 8242 ntAPPRIS P1 TSL 2 BASIC7.26□□□□□ -1.25
BRCA1P38398 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC7.26□□□□□ -1.25
BRCA1P38398 FRY-207ENST00000542859 13200 ntAPPRIS P1 TSL 5 BASIC7.26□□□□□ -1.25
BRCA1P38398 KLHL3-209ENST00000508657 6981 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
BRCA1P38398 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC7.26□□□□□ -1.25
BRCA1P38398 FO393409.1-201ENST00000399325 1372 ntBASIC7.26□□□□□ -1.25
BRCA1P38398 IL5RA-207ENST00000438560 2252 ntAPPRIS ALT2 TSL 2 BASIC7.26□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms