Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 FAM227A-205ENST00000535113 10322 ntAPPRIS ALT2 TSL 5 BASIC8.17□□□□□ -1.1
ERCC3P19447 LDHA-206ENST00000430553 1310 ntTSL 2 BASIC8.17□□□□□ -1.1
ERCC3P19447 SENP8-201ENST00000340912 4281 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
ERCC3P19447 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC8.17□□□□□ -1.1
ERCC3P19447 CACNB4-219ENST00000636108 1698 ntTSL 5 BASIC8.17□□□□□ -1.1
ERCC3P19447 OSBPL1A-202ENST00000357041 1869 ntTSL 2 BASIC8.17□□□□□ -1.1
ERCC3P19447 ZYG11B-201ENST00000294353 8093 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
ERCC3P19447 PTPRR-202ENST00000342084 2037 ntAPPRIS ALT2 TSL 2 BASIC8.17□□□□□ -1.1
ERCC3P19447 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC8.17□□□□□ -1.1
ERCC3P19447 AKAP13-203ENST00000394518 13215 ntAPPRIS ALT2 TSL 1 (best) BASIC8.16□□□□□ -1.1
ERCC3P19447 TP53BP1-202ENST00000382039 6015 ntTSL 5 BASIC8.16□□□□□ -1.1
ERCC3P19447 CSMD2-206ENST00000373388 13118 ntAPPRIS P3 TSL 1 (best) BASIC8.16□□□□□ -1.1
ERCC3P19447 CRBN-201ENST00000231948 2206 ntAPPRIS P3 TSL 1 (best) BASIC8.16□□□□□ -1.1
ERCC3P19447 UTP6-201ENST00000261708 4392 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
ERCC3P19447 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC8.16□□□□□ -1.1
ERCC3P19447 TSHZ2-201ENST00000329613 3093 ntTSL 4 BASIC8.16□□□□□ -1.1
ERCC3P19447 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC8.16□□□□□ -1.1
ERCC3P19447 RNA5SP152-201ENST00000365184 110 ntBASIC8.16□□□□□ -1.1
ERCC3P19447 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
ERCC3P19447 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
ERCC3P19447 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
ERCC3P19447 Y_RNA.578-201ENST00000390903 88 ntBASIC8.16□□□□□ -1.1
ERCC3P19447 IGBP1-AS2-201ENST00000403371 513 ntTSL 3 BASIC8.16□□□□□ -1.1
ERCC3P19447 AL353133.1-201ENST00000407695 401 ntBASIC8.16□□□□□ -1.1
ERCC3P19447 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC8.16□□□□□ -1.1
ERCC3P19447 KYNU-203ENST00000409512 1576 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
ERCC3P19447 CXCR4-202ENST00000409817 1895 ntAPPRIS P3 BASIC8.16□□□□□ -1.1
ERCC3P19447 RPL34P19-201ENST00000415903 342 ntBASIC8.16□□□□□ -1.1
ERCC3P19447 GEMIN2P2-201ENST00000418195 715 ntBASIC8.16□□□□□ -1.1
ERCC3P19447 NFIA-AS2-202ENST00000421455 768 ntTSL 4 BASIC8.16□□□□□ -1.1
ERCC3P19447 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC8.16□□□□□ -1.1
ERCC3P19447 AC093084.1-201ENST00000424233 687 ntBASIC8.16□□□□□ -1.1
ERCC3P19447 AC095038.1-201ENST00000429248 1591 ntBASIC8.16□□□□□ -1.1
ERCC3P19447 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
ERCC3P19447 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC8.16□□□□□ -1.1
ERCC3P19447 AC093716.1-201ENST00000435923 377 ntBASIC8.16□□□□□ -1.1
ERCC3P19447 TRAPPC13P1-201ENST00000435991 1062 ntBASIC8.16□□□□□ -1.1
ERCC3P19447 Z98949.3-201ENST00000436423 472 ntTSL 5 BASIC8.16□□□□□ -1.1
ERCC3P19447 SULT1C2-205ENST00000437390 1359 ntTSL 2 BASIC8.16□□□□□ -1.1
ERCC3P19447 AC007255.1-201ENST00000450540 1376 ntTSL 3 BASIC8.16□□□□□ -1.1
ERCC3P19447 RAD17P2-201ENST00000451754 1977 ntBASIC8.16□□□□□ -1.1
ERCC3P19447 AGKP1-201ENST00000455254 1263 ntBASIC8.16□□□□□ -1.1
ERCC3P19447 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
ERCC3P19447 SNORA81.1-201ENST00000458922 177 ntBASIC8.16□□□□□ -1.1
ERCC3P19447 RPL6P9-201ENST00000466502 859 ntBASIC8.16□□□□□ -1.1
ERCC3P19447 AP003385.3-201ENST00000472498 287 ntBASIC8.16□□□□□ -1.1
ERCC3P19447 SH2D1A-203ENST00000477673 461 ntTSL 2 BASIC8.16□□□□□ -1.1
ERCC3P19447 AC079203.1-201ENST00000487972 404 ntBASIC8.16□□□□□ -1.1
ERCC3P19447 RN7SL649P-201ENST00000496974 275 ntBASIC8.16□□□□□ -1.1
ERCC3P19447 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC8.16□□□□□ -1.1
ERCC3P19447 RAI14-208ENST00000506376 3091 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
ERCC3P19447 RNU6-1028P-201ENST00000517164 93 ntBASIC8.16□□□□□ -1.1
ERCC3P19447 LINC01484-201ENST00000517733 555 ntTSL 4 BASIC8.16□□□□□ -1.1
ERCC3P19447 HIGD1AP18-201ENST00000520730 278 ntBASIC8.16□□□□□ -1.1
ERCC3P19447 YWHAZ-220ENST00000522819 875 ntTSL 3 BASIC8.16□□□□□ -1.1
ERCC3P19447 AC084855.1-201ENST00000528696 572 ntTSL 2 BASIC8.16□□□□□ -1.1
ERCC3P19447 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC8.16□□□□□ -1.1
ERCC3P19447 CHRM5-202ENST00000557872 2687 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
ERCC3P19447 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC8.16□□□□□ -1.1
ERCC3P19447 MIR9-3HG-211ENST00000561037 779 ntTSL 5 BASIC8.16□□□□□ -1.1
ERCC3P19447 MT1B-202ENST00000562399 351 ntTSL 3 BASIC8.16□□□□□ -1.1
ERCC3P19447 AC145350.1-201ENST00000567426 208 ntBASIC8.16□□□□□ -1.1
ERCC3P19447 AC134669.1-201ENST00000581275 672 ntBASIC8.16□□□□□ -1.1
ERCC3P19447 AC011476.3-203ENST00000586961 346 ntTSL 5 BASIC8.16□□□□□ -1.1
ERCC3P19447 AC010327.2-201ENST00000587647 488 ntBASIC8.16□□□□□ -1.1
ERCC3P19447 ZNF540-206ENST00000589117 2349 ntAPPRIS ALT2 TSL 1 (best) BASIC8.16□□□□□ -1.1
ERCC3P19447 ZNF486-202ENST00000597083 734 ntTSL 3 BASIC8.16□□□□□ -1.1
ERCC3P19447 AL049840.5-201ENST00000602827 552 ntBASIC8.16□□□□□ -1.1
ERCC3P19447 AC005377.1-201ENST00000605126 456 ntBASIC8.16□□□□□ -1.1
ERCC3P19447 TRIM49D1-203ENST00000605881 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC8.16□□□□□ -1.1
ERCC3P19447 TMEM132B-206ENST00000613307 9659 ntAPPRIS ALT2 TSL 1 (best) BASIC8.16□□□□□ -1.1
ERCC3P19447 HOXA11-AS1_3.1-201ENST00000613383 98 ntBASIC8.16□□□□□ -1.1
ERCC3P19447 AC104985.3-201ENST00000623479 597 ntBASIC8.16□□□□□ -1.1
ERCC3P19447 UGP2-232ENST00000640075 567 ntTSL 5 BASIC8.16□□□□□ -1.1
ERCC3P19447 POC1B-AS1-201ENST00000605233 8041 ntTSL 2 BASIC8.16□□□□□ -1.1
ERCC3P19447 LINC00861-201ENST00000500989 5330 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
ERCC3P19447 BIRC6-201ENST00000421745 15703 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
ERCC3P19447 CCDC125-203ENST00000396499 3615 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
ERCC3P19447 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
ERCC3P19447 HUWE1-203ENST00000342160 14796 ntAPPRIS P1 TSL 5 BASIC8.16□□□□□ -1.1
ERCC3P19447 AC097478.1-207ENST00000612706 2422 ntTSL 5 BASIC8.15□□□□□ -1.1
ERCC3P19447 MAGT1-201ENST00000358075 4047 ntAPPRIS P2 TSL 1 (best) BASIC8.15□□□□□ -1.1
ERCC3P19447 ARCN1-201ENST00000264028 3845 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
ERCC3P19447 OR2L13-203ENST00000641893 1817 ntAPPRIS P1 BASIC8.15□□□□□ -1.1
ERCC3P19447 NCKAP5-203ENST00000405974 3636 ntAPPRIS ALT2 TSL 5 BASIC8.15□□□□□ -1.1
ERCC3P19447 MSR1-202ENST00000350896 3572 ntTSL 5 BASIC8.15□□□□□ -1.1
ERCC3P19447 C11orf54-202ENST00000354421 1733 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
ERCC3P19447 BBOX1-204ENST00000528583 1724 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
ERCC3P19447 NXF2B-204ENST00000618302 2884 ntAPPRIS P1 TSL 2 BASIC8.15□□□□□ -1.1
ERCC3P19447 PRLR-219ENST00000619676 1402 ntTSL 5 BASIC8.15□□□□□ -1.1
ERCC3P19447 VEPH1-201ENST00000362010 4202 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
ERCC3P19447 TRAM2-201ENST00000182527 6908 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
ERCC3P19447 RND3-201ENST00000263895 2711 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
ERCC3P19447 ZNF292-202ENST00000369577 10610 ntAPPRIS P2 TSL 1 (best) BASIC8.15□□□□□ -1.1
ERCC3P19447 ZEB2-AS1-202ENST00000427278 1322 ntTSL 5 BASIC8.15□□□□□ -1.1
ERCC3P19447 MAPK14-203ENST00000310795 1066 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
ERCC3P19447 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC8.15□□□□□ -1.1
ERCC3P19447 RNU4-40P-201ENST00000364351 143 ntBASIC8.15□□□□□ -1.1
ERCC3P19447 DCP2-201ENST00000389063 8947 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
ERCC3P19447 CNN3P1-201ENST00000401596 935 ntBASIC8.15□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms