Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AP002370.1-201ENST00000528055 1602 ntBASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 ZNF566-202ENST00000424129 2644 ntAPPRIS P3 TSL 2 BASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 KCNJ1-203ENST00000392664 1674 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 KLHL2-204ENST00000506761 2169 ntTSL 5 BASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 AC009135.2-201ENST00000624136 1768 ntBASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 RNA5SP350-201ENST00000363298 111 ntBASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 AL050335.1-201ENST00000396909 869 ntBASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 AL512622.1-201ENST00000414106 481 ntTSL 3 BASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 IPPKP1-201ENST00000422501 768 ntBASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 AC018467.1-202ENST00000432612 533 ntTSL 3 BASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 FABP5P2-201ENST00000439042 408 ntBASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 SOCS5P1-201ENST00000440415 949 ntBASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 MGAT2P1-201ENST00000449718 797 ntBASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 OR2AF1P-201ENST00000454899 889 ntBASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 AC078788.1-201ENST00000498457 634 ntTSL 3 BASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 LSM3P4-201ENST00000502948 309 ntBASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 AC010445.1-201ENST00000507674 440 ntTSL 5 BASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 OR4D12P-201ENST00000509361 911 ntBASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 AC008705.1-201ENST00000518837 489 ntTSL 3 BASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 FCF1-203ENST00000553615 954 ntTSL 3 BASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 AC104151.1-201ENST00000563764 323 ntAPPRIS P1 TSL 3 BASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 MIR4701-201ENST00000583094 63 ntBASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 AC092070.2-201ENST00000597550 545 ntTSL 4 BASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 AC097467.4-201ENST00000605504 141 ntBASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 AC092681.3-201ENST00000609463 678 ntBASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 AC092266.1-201ENST00000610958 165 ntBASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 AC099329.1-203ENST00000629885 767 ntTSL 5 BASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 LINC02341-202ENST00000637462 1295 ntTSL 5 BASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 AL391117.1-201ENST00000640003 1186 ntTSL 5 BASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 TEAD1-201ENST00000334310 3075 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 SLC14A1-208ENST00000586142 2846 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 OLFM4-201ENST00000219022 2897 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 ZNF600-201ENST00000338230 3829 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 OFD1P15Y-201ENST00000411536 1392 ntBASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 AC107067.1-201ENST00000500009 1654 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 DOCK11P1-201ENST00000553480 5932 ntBASIC6.17□□□□□ -1.42
CCDC3Q9BQI4 ZNF528-201ENST00000360465 3978 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 AC009779.8-201ENST00000641684 4384 ntBASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 TNPO1P2-201ENST00000426249 2665 ntBASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 SPIRE1-206ENST00000453447 2107 ntTSL 5 BASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 PLEKHA1-205ENST00000433307 3704 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 LRRC37A16P-202ENST00000586022 3725 ntBASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 RERGL-201ENST00000229002 1147 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 ELOC-201ENST00000284811 683 ntAPPRIS P1 TSL 3 BASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 SNORA51.9-201ENST00000384295 124 ntBASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 IGLV3-10-201ENST00000390315 382 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 AC005008.2-201ENST00000431501 715 ntTSL 3 BASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 AL590004.3-202ENST00000445883 451 ntBASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 VN1R38P-201ENST00000450265 887 ntBASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 RN7SL714P-201ENST00000487050 298 ntBASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 LDHAP1-201ENST00000509421 992 ntBASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 OR51A1P-201ENST00000511110 946 ntBASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 IGLVIV-64-201ENST00000518581 301 ntBASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 IGKV3D-25-201ENST00000519599 235 ntBASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 COX6B1P4-201ENST00000519826 484 ntBASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 AC079015.1-201ENST00000521793 596 ntTSL 2 BASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 NATP-201ENST00000523491 878 ntBASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 TRIM77BP-201ENST00000524985 1119 ntBASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 NPIPB1P-201ENST00000547442 1129 ntTSL 5 BASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 AL162511.1-201ENST00000556542 879 ntTSL 4 BASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 AC127522.1-201ENST00000560531 751 ntTSL 2 BASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 AC108449.2-201ENST00000560865 552 ntTSL 3 BASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 AC007346.1-201ENST00000569208 867 ntBASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 OR7A11P-201ENST00000597719 953 ntBASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 AC026124.2-201ENST00000621847 656 ntBASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 AP003072.5-201ENST00000623872 773 ntBASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 SNX18P12-201ENST00000624821 759 ntBASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 NAPG-201ENST00000322897 3548 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 AC005332.9-201ENST00000620266 2921 ntBASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC6.16□□□□□ -1.42
CCDC3Q9BQI4 SLC9B1P1-201ENST00000331172 1337 ntBASIC6.16□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 87.4 ms