Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 DUXAP3-201ENST00000603616 594 ntBASIC6.82□□□□□ -1.32
USP39Q53GS9 LINC01355-202ENST00000604481 400 ntTSL 2 BASIC6.82□□□□□ -1.32
USP39Q53GS9 GMCL1P2-201ENST00000605230 823 ntBASIC6.82□□□□□ -1.32
USP39Q53GS9 AC087752.4-201ENST00000605911 462 ntBASIC6.82□□□□□ -1.32
USP39Q53GS9 AC018690.1-201ENST00000608144 626 ntBASIC6.82□□□□□ -1.32
USP39Q53GS9 AC239809.3-203ENST00000611286 1050 ntTSL 5 BASIC6.82□□□□□ -1.32
USP39Q53GS9 AC112694.2-201ENST00000623697 768 ntBASIC6.82□□□□□ -1.32
USP39Q53GS9 AC079416.3-201ENST00000624479 549 ntBASIC6.82□□□□□ -1.32
USP39Q53GS9 SNX18P10-201ENST00000625014 519 ntBASIC6.82□□□□□ -1.32
USP39Q53GS9 LINC01435-220ENST00000630847 714 ntTSL 5 BASIC6.82□□□□□ -1.32
USP39Q53GS9 TDRD1-201ENST00000251864 4510 ntAPPRIS P2 TSL 1 (best) BASIC6.82□□□□□ -1.32
USP39Q53GS9 TMBIM6-202ENST00000395006 2598 ntAPPRIS P3 TSL 1 (best) BASIC6.82□□□□□ -1.32
USP39Q53GS9 AC104837.1-201ENST00000444644 1587 ntBASIC6.82□□□□□ -1.32
USP39Q53GS9 AL132656.3-201ENST00000606384 1595 ntBASIC6.82□□□□□ -1.32
USP39Q53GS9 ZNF562-202ENST00000453372 2111 ntAPPRIS P3 TSL 3 BASIC6.82□□□□□ -1.32
USP39Q53GS9 CHORDC1-201ENST00000320585 2654 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
USP39Q53GS9 AC005261.6-201ENST00000623072 1387 ntBASIC6.82□□□□□ -1.32
USP39Q53GS9 TLR4-202ENST00000394487 3908 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
USP39Q53GS9 KALRN-204ENST00000360013 10806 ntAPPRIS P5 TSL 5 BASIC6.81□□□□□ -1.32
USP39Q53GS9 AC007359.1-202ENST00000419158 2939 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
USP39Q53GS9 AC008175.1-201ENST00000446299 2939 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
USP39Q53GS9 AP2B1-215ENST00000616681 3267 ntTSL 2 BASIC6.81□□□□□ -1.32
USP39Q53GS9 SGO1-AS1-205ENST00000634837 1677 ntTSL 5 BASIC6.81□□□□□ -1.32
USP39Q53GS9 ADH7-202ENST00000437033 2516 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
USP39Q53GS9 TMCC1P1-201ENST00000518897 1980 ntBASIC6.81□□□□□ -1.32
USP39Q53GS9 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
USP39Q53GS9 NDUFA4-201ENST00000339600 2130 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
USP39Q53GS9 RNA5SP512-201ENST00000364550 120 ntBASIC6.81□□□□□ -1.32
USP39Q53GS9 IGKV3-7-201ENST00000390247 445 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
USP39Q53GS9 IGLV3-16-201ENST00000390311 385 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
USP39Q53GS9 RNU6-316P-201ENST00000391027 107 ntBASIC6.81□□□□□ -1.32
USP39Q53GS9 KRTAP3-1-201ENST00000391588 594 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
USP39Q53GS9 CCNB2P1-201ENST00000399411 1150 ntBASIC6.81□□□□□ -1.32
USP39Q53GS9 OR7E156P-201ENST00000400303 464 ntBASIC6.81□□□□□ -1.32
USP39Q53GS9 AC233728.1-201ENST00000418049 218 ntTSL 5 BASIC6.81□□□□□ -1.32
USP39Q53GS9 AL021707.2-202ENST00000422408 1080 ntTSL 3 BASIC6.81□□□□□ -1.32
USP39Q53GS9 AC092648.1-201ENST00000425870 423 ntBASIC6.81□□□□□ -1.32
USP39Q53GS9 AC091390.2-201ENST00000432573 374 ntBASIC6.81□□□□□ -1.32
USP39Q53GS9 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC6.81□□□□□ -1.32
USP39Q53GS9 CDY12P-201ENST00000440679 1015 ntBASIC6.81□□□□□ -1.32
USP39Q53GS9 AC009237.1-201ENST00000442127 744 ntBASIC6.81□□□□□ -1.32
USP39Q53GS9 CDY13P-201ENST00000445813 1015 ntBASIC6.81□□□□□ -1.32
USP39Q53GS9 PSMA6P2-201ENST00000457574 686 ntBASIC6.81□□□□□ -1.32
USP39Q53GS9 FOXP1-AS1-201ENST00000465742 700 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
USP39Q53GS9 AC021146.11-201ENST00000503319 491 ntBASIC6.81□□□□□ -1.32
USP39Q53GS9 AC010627.1-201ENST00000503819 1294 ntBASIC6.81□□□□□ -1.32
USP39Q53GS9 AC091868.2-201ENST00000506717 556 ntTSL 3 BASIC6.81□□□□□ -1.32
USP39Q53GS9 AC105389.1-201ENST00000510602 561 ntTSL 4 BASIC6.81□□□□□ -1.32
USP39Q53GS9 AC112198.4-201ENST00000515450 351 ntBASIC6.81□□□□□ -1.32
USP39Q53GS9 SNORA74.1-201ENST00000516320 180 ntBASIC6.81□□□□□ -1.32
USP39Q53GS9 RN7SKP265-201ENST00000516448 223 ntBASIC6.81□□□□□ -1.32
USP39Q53GS9 AC091819.1-201ENST00000518330 630 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
USP39Q53GS9 AC084816.1-202ENST00000536744 647 ntTSL 2 BASIC6.81□□□□□ -1.32
USP39Q53GS9 AC016993.1-201ENST00000547033 1258 ntTSL 3 BASIC6.81□□□□□ -1.32
USP39Q53GS9 EEF1A1P17-201ENST00000547505 1275 ntBASIC6.81□□□□□ -1.32
USP39Q53GS9 AC078922.1-201ENST00000547547 434 ntTSL 3 BASIC6.81□□□□□ -1.32
USP39Q53GS9 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC6.81□□□□□ -1.32
USP39Q53GS9 AC023827.2-201ENST00000566880 1061 ntBASIC6.81□□□□□ -1.32
USP39Q53GS9 AGGF1P5-201ENST00000567900 919 ntBASIC6.81□□□□□ -1.32
USP39Q53GS9 AC145285.4-201ENST00000568183 540 ntTSL 3 BASIC6.81□□□□□ -1.32
USP39Q53GS9 OR1E3-201ENST00000575608 948 ntBASIC6.81□□□□□ -1.32
USP39Q53GS9 AC211433.1-206ENST00000595409 733 ntTSL 5 BASIC6.81□□□□□ -1.32
USP39Q53GS9 AC006262.3-201ENST00000597337 258 ntTSL 3 BASIC6.81□□□□□ -1.32
USP39Q53GS9 AC091133.5-201ENST00000603088 301 ntBASIC6.81□□□□□ -1.32
USP39Q53GS9 AC114477.1-201ENST00000605097 605 ntBASIC6.81□□□□□ -1.32
USP39Q53GS9 AC080013.6-201ENST00000606185 215 ntBASIC6.81□□□□□ -1.32
USP39Q53GS9 AL589743.6-201ENST00000611025 117 ntBASIC6.81□□□□□ -1.32
USP39Q53GS9 AL354702.2-202ENST00000641481 890 ntBASIC6.81□□□□□ -1.32
USP39Q53GS9 TPD52-203ENST00000448733 4339 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
USP39Q53GS9 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
USP39Q53GS9 SLC3A1-206ENST00000409740 1418 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
USP39Q53GS9 ZNF559-ZNF177-203ENST00000541595 2435 ntAPPRIS P3 TSL 2 BASIC6.81□□□□□ -1.32
USP39Q53GS9 NEK5-201ENST00000355568 2918 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
USP39Q53GS9 ZFP62-201ENST00000502412 3415 ntAPPRIS P1 TSL 2 BASIC6.81□□□□□ -1.32
USP39Q53GS9 POLE2-206ENST00000554396 1581 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
USP39Q53GS9 LARS-212ENST00000510191 3737 ntTSL 2 BASIC6.81□□□□□ -1.32
USP39Q53GS9 PMFBP1-201ENST00000237353 3527 ntAPPRIS P2 TSL 1 (best) BASIC6.81□□□□□ -1.32
USP39Q53GS9 KCNJ16-205ENST00000586462 1897 ntTSL 5 BASIC6.81□□□□□ -1.32
USP39Q53GS9 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC6.81□□□□□ -1.32
USP39Q53GS9 TGFBR3-207ENST00000525962 3927 ntAPPRIS P3 TSL 1 (best) BASIC6.81□□□□□ -1.32
USP39Q53GS9 L3MBTL3-201ENST00000361794 4217 ntAPPRIS P4 TSL 5 BASIC6.81□□□□□ -1.32
USP39Q53GS9 NCOR1-205ENST00000395857 9501 ntTSL 5 BASIC6.8□□□□□ -1.32
USP39Q53GS9 FDFT1-222ENST00000538689 2289 ntTSL 2 BASIC6.8□□□□□ -1.32
USP39Q53GS9 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC6.8□□□□□ -1.32
USP39Q53GS9 CIR1P2-201ENST00000514821 1342 ntBASIC6.8□□□□□ -1.32
USP39Q53GS9 AC009812.3-201ENST00000523871 3766 ntTSL 4 BASIC6.8□□□□□ -1.32
USP39Q53GS9 HMGCS2-204ENST00000544913 1925 ntTSL 2 BASIC6.8□□□□□ -1.32
USP39Q53GS9 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
USP39Q53GS9 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
USP39Q53GS9 CNOT4-205ENST00000423368 3297 ntAPPRIS ALT1 TSL 1 (best) BASIC6.8□□□□□ -1.32
USP39Q53GS9 NF1-201ENST00000356175 12362 ntAPPRIS P3 TSL 1 (best) BASIC6.8□□□□□ -1.32
USP39Q53GS9 CASP5-201ENST00000260315 1414 ntTSL 5 BASIC6.8□□□□□ -1.32
USP39Q53GS9 RAET1L-201ENST00000286380 802 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
USP39Q53GS9 RNA5SP433-201ENST00000364491 114 ntBASIC6.8□□□□□ -1.32
USP39Q53GS9 RN7SKP47-201ENST00000365347 328 ntBASIC6.8□□□□□ -1.32
USP39Q53GS9 RNA5SP279-201ENST00000365513 117 ntBASIC6.8□□□□□ -1.32
USP39Q53GS9 ZNF669-202ENST00000366500 489 ntTSL 3 BASIC6.8□□□□□ -1.32
USP39Q53GS9 TM9SF4-202ENST00000398022 3978 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
USP39Q53GS9 AP004243.1-202ENST00000398983 969 ntTSL 5 BASIC6.8□□□□□ -1.32
USP39Q53GS9 RNU4ATAC2P-201ENST00000408674 126 ntBASIC6.8□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms