Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 CLEC2D-203ENST00000290855 5279 ntAPPRIS P3 TSL 1 (best) BASIC7.54□□□□□ -1.2
CCDC88AQ3V6T2 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC7.54□□□□□ -1.2
CCDC88AQ3V6T2 BDNF-207ENST00000395986 3979 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
CCDC88AQ3V6T2 AC012254.3-201ENST00000591183 2117 ntBASIC7.54□□□□□ -1.2
CCDC88AQ3V6T2 STXBP5-203ENST00000367480 3297 ntTSL 5 BASIC7.54□□□□□ -1.2
CCDC88AQ3V6T2 NRCAM-205ENST00000413765 6406 ntTSL 2 BASIC7.54□□□□□ -1.2
CCDC88AQ3V6T2 OR5AU1-202ENST00000641039 8232 ntAPPRIS P1 BASIC7.54□□□□□ -1.2
CCDC88AQ3V6T2 TRIM2-201ENST00000338700 6735 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
CCDC88AQ3V6T2 GPRIN3-202ENST00000609438 14244 ntAPPRIS P1 TSL 2 BASIC7.54□□□□□ -1.2
CCDC88AQ3V6T2 RASGRP3-203ENST00000407811 4210 ntAPPRIS ALT1 TSL 1 (best) BASIC7.54□□□□□ -1.2
CCDC88AQ3V6T2 MAP4K4-206ENST00000413150 6958 ntAPPRIS ALT2 TSL 5 BASIC7.54□□□□□ -1.2
CCDC88AQ3V6T2 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC7.54□□□□□ -1.2
CCDC88AQ3V6T2 ANKRD31-201ENST00000274361 6036 ntAPPRIS P2 TSL 5 BASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 OR7E101P-201ENST00000400428 513 ntBASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 MORF4L1P4-201ENST00000450245 976 ntBASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 AL445647.2-201ENST00000615170 130 ntBASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 AL137067.2-201ENST00000621202 131 ntBASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 CACNB4-225ENST00000636442 4232 ntTSL 5 BASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 PGAP1-201ENST00000354764 11114 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 TGFBR3-202ENST00000370399 4550 ntAPPRIS ALT1 TSL 1 (best) BASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 AL031651.1-201ENST00000615357 1438 ntBASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 PEAK1-202ENST00000558305 4644 ntTSL 4 BASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 DTNA-225ENST00000595022 6016 ntAPPRIS ALT2 TSL 1 (best) BASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 SYTL2-220ENST00000529581 1910 ntTSL 2 BASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 ADTRP-203ENST00000414691 2058 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 CDYL2-207ENST00000570137 8159 ntAPPRIS P2 TSL 1 (best) BASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 AL357568.1-201ENST00000421530 1963 ntTSL 2 BASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 SUPT20H-224ENST00000542180 2478 ntAPPRIS ALT2 TSL 5 BASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 CEP85L-204ENST00000392500 1872 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 FABP12P1-201ENST00000401911 322 ntBASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 AL121835.1-201ENST00000404250 354 ntBASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 AP000534.2-201ENST00000412729 568 ntBASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 EIF4A1P6-201ENST00000448133 1210 ntBASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 AL133445.1-201ENST00000467051 452 ntBASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 AC109454.2-201ENST00000503470 520 ntTSL 5 BASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 CSNK1A1-210ENST00000606719 835 ntTSL 2 BASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 AC245014.3-201ENST00000618589 347 ntBASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 AC119674.1-217ENST00000641942 1086 ntBASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 IARS-213ENST00000627121 4587 ntTSL 5 BASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 TMEM246-203ENST00000374851 5070 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 AC024651.2-201ENST00000562480 2098 ntBASIC7.53□□□□□ -1.2
CCDC88AQ3V6T2 ZNF229-204ENST00000614049 4507 ntAPPRIS P3 TSL 1 (best) BASIC7.52□□□□□ -1.2
CCDC88AQ3V6T2 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC7.52□□□□□ -1.21
CCDC88AQ3V6T2 MGAM-202ENST00000475668 9172 ntAPPRIS P1 TSL 5 BASIC7.52□□□□□ -1.21
CCDC88AQ3V6T2 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
CCDC88AQ3V6T2 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
CCDC88AQ3V6T2 AL731556.1-201ENST00000394628 3711 ntBASIC7.52□□□□□ -1.21
CCDC88AQ3V6T2 AC136624.1-201ENST00000400791 413 ntBASIC7.52□□□□□ -1.21
CCDC88AQ3V6T2 AL132875.1-201ENST00000403623 949 ntBASIC7.52□□□□□ -1.21
CCDC88AQ3V6T2 RNA5SP156-201ENST00000410250 110 ntBASIC7.52□□□□□ -1.21
CCDC88AQ3V6T2 C9orf147-201ENST00000412934 584 ntTSL 3 BASIC7.52□□□□□ -1.21
CCDC88AQ3V6T2 OR6E1P-201ENST00000414424 923 ntBASIC7.52□□□□□ -1.21
CCDC88AQ3V6T2 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC7.52□□□□□ -1.21
CCDC88AQ3V6T2 CYP4F30P-202ENST00000420048 405 ntBASIC7.52□□□□□ -1.21
CCDC88AQ3V6T2 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC7.52□□□□□ -1.21
CCDC88AQ3V6T2 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC7.52□□□□□ -1.21
CCDC88AQ3V6T2 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC7.52□□□□□ -1.21
CCDC88AQ3V6T2 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC7.52□□□□□ -1.21
CCDC88AQ3V6T2 AL590399.3-202ENST00000448491 495 ntTSL 5 BASIC7.52□□□□□ -1.21
CCDC88AQ3V6T2 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC7.52□□□□□ -1.21
CCDC88AQ3V6T2 AC091078.2-201ENST00000557145 559 ntBASIC7.52□□□□□ -1.21
CCDC88AQ3V6T2 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC7.52□□□□□ -1.21
CCDC88AQ3V6T2 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC7.52□□□□□ -1.21
CCDC88AQ3V6T2 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
CCDC88AQ3V6T2 ADA2-203ENST00000399837 4505 ntAPPRIS P3 TSL 1 (best) BASIC7.52□□□□□ -1.21
CCDC88AQ3V6T2 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC7.52□□□□□ -1.21
CCDC88AQ3V6T2 AC007342.5-201ENST00000571340 2142 ntBASIC7.52□□□□□ -1.21
CCDC88AQ3V6T2 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC7.52□□□□□ -1.21
CCDC88AQ3V6T2 EIF4A2-205ENST00000440191 1889 ntAPPRIS ALT1 TSL 1 (best) BASIC7.52□□□□□ -1.21
CCDC88AQ3V6T2 GNL2P1-201ENST00000451274 2190 ntBASIC7.52□□□□□ -1.21
CCDC88AQ3V6T2 UTY-205ENST00000382896 6661 ntAPPRIS ALT2 TSL 1 (best) BASIC7.52□□□□□ -1.21
CCDC88AQ3V6T2 UTY-211ENST00000540140 6652 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
CCDC88AQ3V6T2 UTY-214ENST00000617789 6682 ntAPPRIS ALT2 TSL 1 (best) BASIC7.52□□□□□ -1.21
CCDC88AQ3V6T2 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC7.52□□□□□ -1.21
CCDC88AQ3V6T2 GCNT3-201ENST00000396065 4933 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
CCDC88AQ3V6T2 OLFM3-202ENST00000370103 3255 ntAPPRIS P3 TSL 1 (best) BASIC7.52□□□□□ -1.21
CCDC88AQ3V6T2 AC112243.1-201ENST00000623949 3851 ntBASIC7.52□□□□□ -1.21
CCDC88AQ3V6T2 MIR375-201ENST00000362103 64 ntBASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 BICC1-202ENST00000373886 5475 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 AL445238.1-204ENST00000400311 463 ntBASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 AL445466.1-201ENST00000448432 357 ntBASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 EIF4A2P5-201ENST00000529914 499 ntBASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 ADAMTS7P4-205ENST00000560651 453 ntTSL 3 BASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 OR4H6P-201ENST00000563771 921 ntBASIC7.51□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 73.4 ms