Protein–RNA interactions for Protein: P53618

COPB1, Coatomer subunit beta, humanhuman

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1P53618 AC010326.3-201ENST00000597780 679 ntTSL 5 BASIC6.88□□□□□ -1.31
COPB1P53618 AC005229.3-201ENST00000603438 323 ntBASIC6.88□□□□□ -1.31
COPB1P53618 AC012175.1-201ENST00000603755 531 ntBASIC6.88□□□□□ -1.31
COPB1P53618 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC6.88□□□□□ -1.31
COPB1P53618 MIR6849-201ENST00000618543 69 ntBASIC6.88□□□□□ -1.31
COPB1P53618 MIR7159-201ENST00000620587 66 ntBASIC6.88□□□□□ -1.31
COPB1P53618 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
COPB1P53618 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC6.88□□□□□ -1.31
COPB1P53618 RRN3P1-201ENST00000514813 3645 ntTSL 2 BASIC6.88□□□□□ -1.31
COPB1P53618 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC6.88□□□□□ -1.31
COPB1P53618 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC6.88□□□□□ -1.31
COPB1P53618 NAT1-209ENST00000541942 1948 ntAPPRIS P1 TSL 3 BASIC6.88□□□□□ -1.31
COPB1P53618 KCNAB1-212ENST00000490337 3122 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
COPB1P53618 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
COPB1P53618 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
COPB1P53618 ATP5A1P4-201ENST00000556888 1605 ntBASIC6.87□□□□□ -1.31
COPB1P53618 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC6.87□□□□□ -1.31
COPB1P53618 AP000547.3-204ENST00000588548 2523 ntBASIC6.87□□□□□ -1.31
COPB1P53618 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC6.87□□□□□ -1.31
COPB1P53618 FANCD2P2-201ENST00000437591 1400 ntBASIC6.87□□□□□ -1.31
COPB1P53618 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
COPB1P53618 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
COPB1P53618 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC6.87□□□□□ -1.31
COPB1P53618 ZEB2-AS1-202ENST00000427278 1322 ntTSL 5 BASIC6.87□□□□□ -1.31
COPB1P53618 SNORA7A-201ENST00000384765 139 ntBASIC6.87□□□□□ -1.31
COPB1P53618 RPL23AP17-201ENST00000401064 499 ntBASIC6.87□□□□□ -1.31
COPB1P53618 AL354707.3-201ENST00000427308 331 ntBASIC6.87□□□□□ -1.31
COPB1P53618 AL158212.1-201ENST00000428766 315 ntTSL 5 BASIC6.87□□□□□ -1.31
COPB1P53618 RPL34P27-201ENST00000428810 349 ntBASIC6.87□□□□□ -1.31
COPB1P53618 CLNS1AP1-201ENST00000435954 682 ntBASIC6.87□□□□□ -1.31
COPB1P53618 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC6.87□□□□□ -1.31
COPB1P53618 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC6.87□□□□□ -1.31
COPB1P53618 OR52E7P-201ENST00000452394 933 ntBASIC6.87□□□□□ -1.31
COPB1P53618 AC112187.1-201ENST00000455837 479 ntBASIC6.87□□□□□ -1.31
COPB1P53618 TPRKBP1-201ENST00000456243 481 ntBASIC6.87□□□□□ -1.31
COPB1P53618 AC073594.1-201ENST00000462065 364 ntBASIC6.87□□□□□ -1.31
COPB1P53618 SSBP1-205ENST00000465582 731 ntAPPRIS P1 TSL 5 BASIC6.87□□□□□ -1.31
COPB1P53618 RN7SL714P-201ENST00000487050 298 ntBASIC6.87□□□□□ -1.31
COPB1P53618 AC147055.1-201ENST00000509261 750 ntBASIC6.87□□□□□ -1.31
COPB1P53618 AC010343.2-201ENST00000510162 224 ntBASIC6.87□□□□□ -1.31
COPB1P53618 AC018607.1-201ENST00000518552 673 ntTSL 5 BASIC6.87□□□□□ -1.31
COPB1P53618 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC6.87□□□□□ -1.31
COPB1P53618 RPA2P3-201ENST00000533268 770 ntBASIC6.87□□□□□ -1.31
COPB1P53618 NPIPA8-202ENST00000541810 1131 ntAPPRIS P1 TSL 5 BASIC6.87□□□□□ -1.31
COPB1P53618 AC007207.2-201ENST00000543206 542 ntTSL 3 BASIC6.87□□□□□ -1.31
COPB1P53618 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC6.87□□□□□ -1.31
COPB1P53618 RPL3P13-201ENST00000550415 216 ntBASIC6.87□□□□□ -1.31
COPB1P53618 NPIPA3-203ENST00000552140 1053 ntTSL 5 BASIC6.87□□□□□ -1.31
COPB1P53618 AC080011.1-201ENST00000552378 989 ntTSL 3 BASIC6.87□□□□□ -1.31
COPB1P53618 NPIPA2-203ENST00000553201 1053 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
COPB1P53618 AL357153.3-201ENST00000553982 611 ntTSL 3 BASIC6.87□□□□□ -1.31
COPB1P53618 AC023968.1-201ENST00000560719 475 ntBASIC6.87□□□□□ -1.31
COPB1P53618 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC6.87□□□□□ -1.31
COPB1P53618 AC023389.2-201ENST00000580031 955 ntBASIC6.87□□□□□ -1.31
COPB1P53618 AC016383.1-201ENST00000582700 714 ntTSL 3 BASIC6.87□□□□□ -1.31
COPB1P53618 AC018761.4-201ENST00000585742 272 ntTSL 3 BASIC6.87□□□□□ -1.31
COPB1P53618 GLYATL1P2-202ENST00000588046 902 ntBASIC6.87□□□□□ -1.31
COPB1P53618 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC6.87□□□□□ -1.31
COPB1P53618 AC105148.1-201ENST00000604961 409 ntBASIC6.87□□□□□ -1.31
COPB1P53618 WDR11-AS1-204ENST00000608667 522 ntTSL 5 BASIC6.87□□□□□ -1.31
COPB1P53618 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC6.87□□□□□ -1.31
COPB1P53618 AP002371.2-201ENST00000624450 503 ntBASIC6.87□□□□□ -1.31
COPB1P53618 AL049767.1-201ENST00000636811 514 ntTSL 5 BASIC6.87□□□□□ -1.31
COPB1P53618 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
COPB1P53618 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC6.87□□□□□ -1.31
COPB1P53618 AL136984.1-201ENST00000607611 1893 ntBASIC6.87□□□□□ -1.31
COPB1P53618 AC092724.1-201ENST00000624623 3397 ntBASIC6.87□□□□□ -1.31
COPB1P53618 ARHGAP15-201ENST00000295095 1775 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
COPB1P53618 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC6.87□□□□□ -1.31
COPB1P53618 SMG1P5-202ENST00000529428 4219 ntBASIC6.87□□□□□ -1.31
COPB1P53618 SMG1P2-201ENST00000566127 4221 ntBASIC6.87□□□□□ -1.31
COPB1P53618 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC6.86□□□□□ -1.31
COPB1P53618 AC007159.1-201ENST00000566529 4706 ntBASIC6.86□□□□□ -1.31
COPB1P53618 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC6.86□□□□□ -1.31
COPB1P53618 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
COPB1P53618 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
COPB1P53618 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC6.86□□□□□ -1.31
COPB1P53618 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
COPB1P53618 TNP1-201ENST00000236979 407 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
COPB1P53618 ZNF669-202ENST00000366500 489 ntTSL 3 BASIC6.86□□□□□ -1.31
COPB1P53618 ATP5EP2-201ENST00000381026 385 ntAPPRIS P1 BASIC6.86□□□□□ -1.31
COPB1P53618 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC6.86□□□□□ -1.31
COPB1P53618 AC016027.5-201ENST00000427227 210 ntBASIC6.86□□□□□ -1.31
COPB1P53618 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC6.86□□□□□ -1.31
COPB1P53618 GTF2IP14-201ENST00000441415 586 ntBASIC6.86□□□□□ -1.31
COPB1P53618 MTND3P4-201ENST00000453537 303 ntBASIC6.86□□□□□ -1.31
COPB1P53618 RANP2-201ENST00000456833 229 ntBASIC6.86□□□□□ -1.31
COPB1P53618 AC115223.1-201ENST00000466377 870 ntBASIC6.86□□□□□ -1.31
COPB1P53618 L3HYPDH-206ENST00000487285 700 ntTSL 3 BASIC6.86□□□□□ -1.31
COPB1P53618 LINC02025-201ENST00000488348 360 ntTSL 3 BASIC6.86□□□□□ -1.31
COPB1P53618 AC096746.1-201ENST00000501965 1042 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
COPB1P53618 AC093664.1-201ENST00000511779 289 ntBASIC6.86□□□□□ -1.31
COPB1P53618 AC008429.4-201ENST00000521201 182 ntBASIC6.86□□□□□ -1.31
COPB1P53618 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC6.86□□□□□ -1.31
COPB1P53618 AC021269.1-201ENST00000526860 705 ntBASIC6.86□□□□□ -1.31
COPB1P53618 BCAS2P1-201ENST00000528022 632 ntBASIC6.86□□□□□ -1.31
COPB1P53618 AC090791.1-201ENST00000530960 492 ntTSL 3 BASIC6.86□□□□□ -1.31
COPB1P53618 KLRC1-204ENST00000536188 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC6.86□□□□□ -1.31
COPB1P53618 AC011601.1-201ENST00000549710 577 ntTSL 3 BASIC6.86□□□□□ -1.31
COPB1P53618 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC6.86□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 69.7 ms