Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
SMARCA1P28370 CNTN5-202ENST00000418526 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC7.34□□□□□ -1.23
SMARCA1P28370 CPED1-201ENST00000310396 5340 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
SMARCA1P28370 NCOA6-202ENST00000374796 9311 ntAPPRIS P3 TSL 1 (best) BASIC7.34□□□□□ -1.23
SMARCA1P28370 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC7.34□□□□□ -1.23
SMARCA1P28370 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC7.34□□□□□ -1.23
SMARCA1P28370 GABARAPL3-201ENST00000412799 354 ntBASIC7.34□□□□□ -1.23
SMARCA1P28370 CYP4F30P-202ENST00000420048 405 ntBASIC7.34□□□□□ -1.23
SMARCA1P28370 AL354824.1-201ENST00000424931 349 ntTSL 3 BASIC7.34□□□□□ -1.23
SMARCA1P28370 AL390879.2-203ENST00000426943 1121 ntBASIC7.34□□□□□ -1.23
SMARCA1P28370 RPSAP32-201ENST00000432681 526 ntBASIC7.34□□□□□ -1.23
SMARCA1P28370 AL451136.1-201ENST00000435399 325 ntBASIC7.34□□□□□ -1.23
SMARCA1P28370 AL450003.1-201ENST00000439447 455 ntTSL 2 BASIC7.34□□□□□ -1.23
SMARCA1P28370 AC073486.1-202ENST00000458437 489 ntTSL 3 BASIC7.34□□□□□ -1.23
SMARCA1P28370 OR7E22P-201ENST00000478335 1035 ntBASIC7.34□□□□□ -1.23
SMARCA1P28370 OR9A1P-202ENST00000484361 945 ntBASIC7.34□□□□□ -1.23
SMARCA1P28370 AC091874.2-201ENST00000505889 720 ntBASIC7.34□□□□□ -1.23
SMARCA1P28370 OR4D12P-201ENST00000509361 911 ntBASIC7.34□□□□□ -1.23
SMARCA1P28370 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC7.34□□□□□ -1.23
SMARCA1P28370 AC025524.2-206ENST00000517953 439 ntTSL 3 BASIC7.34□□□□□ -1.23
SMARCA1P28370 AC078922.1-201ENST00000547547 434 ntTSL 3 BASIC7.34□□□□□ -1.23
SMARCA1P28370 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC7.34□□□□□ -1.23
SMARCA1P28370 AC009120.3-201ENST00000563335 499 ntBASIC7.34□□□□□ -1.23
SMARCA1P28370 AC022872.1-201ENST00000568391 781 ntTSL 2 BASIC7.34□□□□□ -1.23
SMARCA1P28370 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC7.34□□□□□ -1.23
SMARCA1P28370 LAMTOR5-207ENST00000602858 553 ntTSL 2 BASIC7.34□□□□□ -1.23
SMARCA1P28370 LINC01435-220ENST00000630847 714 ntTSL 5 BASIC7.34□□□□□ -1.23
SMARCA1P28370 AC005618.1-201ENST00000606901 3148 ntBASIC7.34□□□□□ -1.23
SMARCA1P28370 GNRHR-201ENST00000226413 2164 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
SMARCA1P28370 RSAD2-201ENST00000382040 3519 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
SMARCA1P28370 ACACA-231ENST00000614428 9554 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
SMARCA1P28370 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC7.34□□□□□ -1.23
SMARCA1P28370 RRN3P1-201ENST00000514813 3645 ntTSL 2 BASIC7.34□□□□□ -1.23
SMARCA1P28370 AC006600.2-201ENST00000624834 2506 ntBASIC7.34□□□□□ -1.23
SMARCA1P28370 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.24
SMARCA1P28370 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC7.34□□□□□ -1.24
SMARCA1P28370 TEK-202ENST00000406359 3935 ntTSL 2 BASIC7.33□□□□□ -1.24
SMARCA1P28370 AC114876.1-201ENST00000490962 1366 ntBASIC7.33□□□□□ -1.24
SMARCA1P28370 PPBPP2-201ENST00000513150 1362 ntBASIC7.33□□□□□ -1.24
SMARCA1P28370 SYNE2-216ENST00000555002 11532 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
SMARCA1P28370 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
SMARCA1P28370 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC7.33□□□□□ -1.24
SMARCA1P28370 CYLD-207ENST00000564326 3259 ntAPPRIS P1 TSL 5 BASIC7.33□□□□□ -1.24
SMARCA1P28370 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC7.33□□□□□ -1.24
SMARCA1P28370 CDKAL1-204ENST00000613575 1673 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
SMARCA1P28370 FTO-215ENST00000636491 1676 ntTSL 5 BASIC7.33□□□□□ -1.24
SMARCA1P28370 ZNF160-202ENST00000418871 4219 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
SMARCA1P28370 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
SMARCA1P28370 C3orf14-201ENST00000232519 690 ntAPPRIS P1 TSL 3 BASIC7.33□□□□□ -1.24
SMARCA1P28370 GSTA5-201ENST00000284562 845 ntAPPRIS P1 TSL 5 BASIC7.33□□□□□ -1.24
SMARCA1P28370 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
SMARCA1P28370 RPL11P4-201ENST00000332269 436 ntBASIC7.33□□□□□ -1.24
SMARCA1P28370 TERB2-201ENST00000340827 1281 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
SMARCA1P28370 RNA5SP478-201ENST00000364657 115 ntBASIC7.33□□□□□ -1.24
SMARCA1P28370 AL050305.1-201ENST00000399993 1230 ntBASIC7.33□□□□□ -1.24
SMARCA1P28370 AC099535.1-201ENST00000408928 371 ntBASIC7.33□□□□□ -1.24
SMARCA1P28370 MIRLET7DHG-201ENST00000416309 1294 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
SMARCA1P28370 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC7.33□□□□□ -1.24
SMARCA1P28370 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
SMARCA1P28370 AC112492.2-201ENST00000432774 1030 ntBASIC7.33□□□□□ -1.24
SMARCA1P28370 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC7.33□□□□□ -1.24
SMARCA1P28370 AC139712.3-201ENST00000443926 639 ntTSL 2 BASIC7.33□□□□□ -1.24
SMARCA1P28370 CYCSP53-201ENST00000455540 265 ntBASIC7.33□□□□□ -1.24
SMARCA1P28370 MTCYBP14-201ENST00000457471 715 ntBASIC7.33□□□□□ -1.24
SMARCA1P28370 RN7SKP183-201ENST00000517169 324 ntBASIC7.33□□□□□ -1.24
SMARCA1P28370 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC7.33□□□□□ -1.24
SMARCA1P28370 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC7.33□□□□□ -1.24
SMARCA1P28370 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC7.33□□□□□ -1.24
SMARCA1P28370 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC7.33□□□□□ -1.24
SMARCA1P28370 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC7.33□□□□□ -1.24
SMARCA1P28370 AL132989.1-201ENST00000557322 576 ntTSL 3 BASIC7.33□□□□□ -1.24
SMARCA1P28370 AC004232.2-201ENST00000574245 821 ntBASIC7.33□□□□□ -1.24
SMARCA1P28370 OR1E3-201ENST00000575608 948 ntBASIC7.33□□□□□ -1.24
SMARCA1P28370 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC7.33□□□□□ -1.24
SMARCA1P28370 AC022387.2-201ENST00000604050 448 ntBASIC7.33□□□□□ -1.24
SMARCA1P28370 AL713998.2-201ENST00000604538 1198 ntBASIC7.33□□□□□ -1.24
SMARCA1P28370 CYCSP1-201ENST00000604815 315 ntBASIC7.33□□□□□ -1.24
SMARCA1P28370 AC018690.1-201ENST00000608144 626 ntBASIC7.33□□□□□ -1.24
SMARCA1P28370 AC004921.1-201ENST00000608884 733 ntTSL 5 BASIC7.33□□□□□ -1.24
SMARCA1P28370 AC010998.3-201ENST00000613871 631 ntBASIC7.33□□□□□ -1.24
SMARCA1P28370 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC7.33□□□□□ -1.24
SMARCA1P28370 MIR7159-201ENST00000620587 66 ntBASIC7.33□□□□□ -1.24
SMARCA1P28370 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC7.33□□□□□ -1.24
SMARCA1P28370 AC111152.1-202ENST00000635848 339 ntBASIC7.33□□□□□ -1.24
SMARCA1P28370 VEGFD-201ENST00000297904 2037 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
SMARCA1P28370 INPP5F-208ENST00000637174 3168 ntTSL 5 BASIC7.33□□□□□ -1.24
SMARCA1P28370 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC7.33□□□□□ -1.24
SMARCA1P28370 ZNF402P-201ENST00000404435 3100 ntBASIC7.33□□□□□ -1.24
SMARCA1P28370 KLHL5-205ENST00000508137 2926 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
SMARCA1P28370 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
SMARCA1P28370 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
SMARCA1P28370 ARHGAP15-201ENST00000295095 1775 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
SMARCA1P28370 VWA5A-203ENST00000392748 3419 ntAPPRIS P4 TSL 1 (best) BASIC7.33□□□□□ -1.24
SMARCA1P28370 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
SMARCA1P28370 SYTL2-220ENST00000529581 1910 ntTSL 2 BASIC7.33□□□□□ -1.24
SMARCA1P28370 OR14A16-202ENST00000641093 1367 ntAPPRIS P1 BASIC7.33□□□□□ -1.24
SMARCA1P28370 ZNF329-203ENST00000597186 3930 ntAPPRIS P1 TSL 5 BASIC7.33□□□□□ -1.24
SMARCA1P28370 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC7.32□□□□□ -1.24
SMARCA1P28370 AC090181.3-201ENST00000624777 1514 ntBASIC7.32□□□□□ -1.24
SMARCA1P28370 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC7.32□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 72.8 ms