Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 TCF7L2-218ENST00000538897 4000 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
COL5A3P25940 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
COL5A3P25940 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
COL5A3P25940 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC7.5□□□□□ -1.21
COL5A3P25940 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
COL5A3P25940 FTO-215ENST00000636491 1676 ntTSL 5 BASIC7.5□□□□□ -1.21
COL5A3P25940 SORBS1-211ENST00000371247 7354 ntAPPRIS ALT2 TSL 5 BASIC7.5□□□□□ -1.21
COL5A3P25940 CLASP1-208ENST00000455322 5660 ntTSL 5 BASIC7.5□□□□□ -1.21
COL5A3P25940 PARP4P1-201ENST00000435945 2337 ntBASIC7.5□□□□□ -1.21
COL5A3P25940 CDH8-203ENST00000577390 9721 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
COL5A3P25940 DNA2-203ENST00000399180 3207 ntTSL 2 BASIC7.5□□□□□ -1.21
COL5A3P25940 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC7.5□□□□□ -1.21
COL5A3P25940 ZNF827-203ENST00000508784 7463 ntAPPRIS ALT2 TSL 1 (best) BASIC7.5□□□□□ -1.21
COL5A3P25940 PPP1R12B-204ENST00000391959 15431 ntTSL 5 BASIC7.5□□□□□ -1.21
COL5A3P25940 KCNAB1-212ENST00000490337 3122 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
COL5A3P25940 DPCR1-201ENST00000304311 2658 ntAPPRIS ALT2 TSL 5 BASIC7.5□□□□□ -1.21
COL5A3P25940 SLMAP-202ENST00000295952 4420 ntAPPRIS P1 TSL 2 BASIC7.5□□□□□ -1.21
COL5A3P25940 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC7.5□□□□□ -1.21
COL5A3P25940 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC7.5□□□□□ -1.21
COL5A3P25940 BMPR1A-201ENST00000372037 11255 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
COL5A3P25940 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC7.49□□□□□ -1.21
COL5A3P25940 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
COL5A3P25940 RNU1-19P-201ENST00000363306 165 ntBASIC7.49□□□□□ -1.21
COL5A3P25940 RNA5SP514-201ENST00000363717 111 ntBASIC7.49□□□□□ -1.21
COL5A3P25940 RNA5SP131-201ENST00000365452 119 ntBASIC7.49□□□□□ -1.21
COL5A3P25940 SPRYD7P1-201ENST00000443861 570 ntBASIC7.49□□□□□ -1.21
COL5A3P25940 NRBF2P4-201ENST00000520874 850 ntBASIC7.49□□□□□ -1.21
COL5A3P25940 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC7.49□□□□□ -1.21
COL5A3P25940 OR4A46P-201ENST00000527255 933 ntBASIC7.49□□□□□ -1.21
COL5A3P25940 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC7.49□□□□□ -1.21
COL5A3P25940 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC7.49□□□□□ -1.21
COL5A3P25940 AC005840.5-201ENST00000619166 599 ntBASIC7.49□□□□□ -1.21
COL5A3P25940 AC007683.2-201ENST00000624681 714 ntBASIC7.49□□□□□ -1.21
COL5A3P25940 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC7.49□□□□□ -1.21
COL5A3P25940 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC7.49□□□□□ -1.21
COL5A3P25940 CYFIP1-208ENST00000617928 6793 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
COL5A3P25940 CASC19-205ENST00000641013 1411 ntBASIC7.49□□□□□ -1.21
COL5A3P25940 LARP1B-201ENST00000326639 4891 ntAPPRIS P1 TSL 5 BASIC7.49□□□□□ -1.21
COL5A3P25940 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC7.49□□□□□ -1.21
COL5A3P25940 DDX46-201ENST00000354283 3821 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
COL5A3P25940 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC7.49□□□□□ -1.21
COL5A3P25940 AL355916.1-202ENST00000508827 5103 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
COL5A3P25940 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
COL5A3P25940 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
COL5A3P25940 NEDD4L-204ENST00000382850 8251 ntAPPRIS ALT2 TSL 1 (best) BASIC7.49□□□□□ -1.21
COL5A3P25940 AC008937.3-201ENST00000606813 1700 ntBASIC7.49□□□□□ -1.21
COL5A3P25940 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC7.49□□□□□ -1.21
COL5A3P25940 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
COL5A3P25940 KLF7-202ENST00000412414 7954 ntTSL 2 BASIC7.49□□□□□ -1.21
COL5A3P25940 CYP3A5-202ENST00000339843 3320 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
COL5A3P25940 ZNF33A-204ENST00000458705 6084 ntAPPRIS P3 TSL 1 (best) BASIC7.49□□□□□ -1.21
COL5A3P25940 OSBPL9-205ENST00000447887 2940 ntTSL 2 BASIC7.49□□□□□ -1.21
COL5A3P25940 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC7.49□□□□□ -1.21
COL5A3P25940 AL139148.1-201ENST00000427122 680 ntBASIC7.49□□□□□ -1.21
COL5A3P25940 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC7.49□□□□□ -1.21
COL5A3P25940 SUMO2P7-201ENST00000511179 285 ntBASIC7.49□□□□□ -1.21
COL5A3P25940 RNA5SP92-201ENST00000516437 110 ntBASIC7.49□□□□□ -1.21
COL5A3P25940 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC7.49□□□□□ -1.21
COL5A3P25940 AC044860.2-201ENST00000561005 179 ntBASIC7.49□□□□□ -1.21
COL5A3P25940 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC7.49□□□□□ -1.21
COL5A3P25940 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC7.49□□□□□ -1.21
COL5A3P25940 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC7.49□□□□□ -1.21
COL5A3P25940 ZC3H6-202ENST00000409871 11542 ntAPPRIS P1 TSL 2 BASIC7.49□□□□□ -1.21
COL5A3P25940 ZNF716-201ENST00000420713 5197 ntAPPRIS P1 TSL 4 BASIC7.49□□□□□ -1.21
COL5A3P25940 RMST-210ENST00000640149 2844 ntTSL 5 BASIC7.49□□□□□ -1.21
COL5A3P25940 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC7.49□□□□□ -1.21
COL5A3P25940 AL161756.3-201ENST00000641216 2071 ntBASIC7.48□□□□□ -1.21
COL5A3P25940 AC105749.1-201ENST00000631338 2008 ntBASIC7.48□□□□□ -1.21
COL5A3P25940 SRRM1P3-201ENST00000426911 2678 ntBASIC7.48□□□□□ -1.21
COL5A3P25940 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC7.48□□□□□ -1.21
COL5A3P25940 DNA2-208ENST00000551118 3468 ntTSL 5 BASIC7.48□□□□□ -1.21
COL5A3P25940 AC010478.1-201ENST00000601500 6762 ntBASIC7.48□□□□□ -1.21
COL5A3P25940 IGFN1-202ENST00000335211 11810 ntAPPRIS P2 TSL 5 BASIC7.48□□□□□ -1.21
COL5A3P25940 TSACC-201ENST00000368251 438 ntAPPRIS P1 TSL 3 BASIC7.48□□□□□ -1.21
COL5A3P25940 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC7.48□□□□□ -1.21
COL5A3P25940 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC7.48□□□□□ -1.21
COL5A3P25940 AL451136.1-201ENST00000435399 325 ntBASIC7.48□□□□□ -1.21
COL5A3P25940 RANP1-206ENST00000455094 651 ntBASIC7.48□□□□□ -1.21
COL5A3P25940 AC004129.2-201ENST00000457229 287 ntBASIC7.48□□□□□ -1.21
COL5A3P25940 RPL35AP19-201ENST00000469425 329 ntBASIC7.48□□□□□ -1.21
COL5A3P25940 RN7SL583P-201ENST00000475692 287 ntBASIC7.48□□□□□ -1.21
COL5A3P25940 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
COL5A3P25940 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC7.48□□□□□ -1.21
COL5A3P25940 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC7.48□□□□□ -1.21
COL5A3P25940 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
COL5A3P25940 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC7.48□□□□□ -1.21
COL5A3P25940 AL139407.1-201ENST00000613826 1175 ntBASIC7.48□□□□□ -1.21
COL5A3P25940 TCL6_3.1-201ENST00000619064 137 ntBASIC7.48□□□□□ -1.21
COL5A3P25940 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC7.48□□□□□ -1.21
COL5A3P25940 PKP4-202ENST00000389759 4443 ntAPPRIS P4 TSL 1 (best) BASIC7.48□□□□□ -1.21
COL5A3P25940 ZNF718-201ENST00000510175 3495 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
COL5A3P25940 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC7.48□□□□□ -1.21
COL5A3P25940 RAD18-201ENST00000264926 5886 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
COL5A3P25940 TTC28-208ENST00000612946 11274 ntAPPRIS ALT2 TSL 5 BASIC7.48□□□□□ -1.21
COL5A3P25940 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
COL5A3P25940 AL157831.2-201ENST00000564681 3095 ntBASIC7.48□□□□□ -1.21
COL5A3P25940 TCL6-203ENST00000459662 3307 ntTSL 2 BASIC7.48□□□□□ -1.21
COL5A3P25940 AC009166.2-201ENST00000624410 2833 ntBASIC7.48□□□□□ -1.21
COL5A3P25940 UTY-212ENST00000545955 6817 ntAPPRIS P5 TSL 1 (best) BASIC7.48□□□□□ -1.21
COL5A3P25940 RAB21-201ENST00000261263 15546 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 72.8 ms