Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC002504.1-201ENST00000438281 691 ntBASIC5.9□□□□□ -1.46
COL5A1P20908 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC5.9□□□□□ -1.46
COL5A1P20908 AL731661.2-201ENST00000448824 806 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
COL5A1P20908 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC5.9□□□□□ -1.46
COL5A1P20908 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC5.9□□□□□ -1.46
COL5A1P20908 PFN1P6-201ENST00000476786 399 ntBASIC5.9□□□□□ -1.46
COL5A1P20908 RN7SL826P-201ENST00000479724 288 ntBASIC5.9□□□□□ -1.46
COL5A1P20908 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC5.9□□□□□ -1.46
COL5A1P20908 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC5.9□□□□□ -1.46
COL5A1P20908 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
COL5A1P20908 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC5.9□□□□□ -1.46
COL5A1P20908 AC005244.1-201ENST00000582566 339 ntBASIC5.9□□□□□ -1.46
COL5A1P20908 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC5.9□□□□□ -1.46
COL5A1P20908 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC5.9□□□□□ -1.46
COL5A1P20908 GCNT3-201ENST00000396065 4933 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL5A1P20908 MMS22L-201ENST00000275053 8643 ntAPPRIS P1 TSL 2 BASIC5.9□□□□□ -1.46
COL5A1P20908 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC5.9□□□□□ -1.46
COL5A1P20908 MRE11-201ENST00000323929 6897 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL5A1P20908 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC5.9□□□□□ -1.46
COL5A1P20908 CNOT7-201ENST00000361272 6913 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL5A1P20908 MELK-211ENST00000545008 2236 ntTSL 2 BASIC5.9□□□□□ -1.46
COL5A1P20908 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL5A1P20908 CNR1-202ENST00000369499 5549 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.46
COL5A1P20908 TRG-AS1-201ENST00000629357 3645 ntTSL 2 BASIC5.9□□□□□ -1.46
COL5A1P20908 MBD5-201ENST00000404807 5920 ntTSL 5 BASIC5.9□□□□□ -1.47
COL5A1P20908 GPNMB-201ENST00000258733 2862 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.47
COL5A1P20908 SSBP2-201ENST00000320672 8780 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
COL5A1P20908 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC5.9□□□□□ -1.47
COL5A1P20908 RPGRIP1L-206ENST00000564374 3877 ntTSL 2 BASIC5.9□□□□□ -1.47
COL5A1P20908 PABPC1P8-201ENST00000452851 2086 ntBASIC5.9□□□□□ -1.47
COL5A1P20908 RAI14-228ENST00000515799 3486 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
COL5A1P20908 BTN3A2-201ENST00000356386 3017 ntAPPRIS P3 TSL 5 BASIC5.9□□□□□ -1.47
COL5A1P20908 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC5.9□□□□□ -1.47
COL5A1P20908 KCNMB2-204ENST00000432997 2552 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
COL5A1P20908 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC5.9□□□□□ -1.47
COL5A1P20908 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC5.9□□□□□ -1.47
COL5A1P20908 ERVFRD-1-201ENST00000472091 3198 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
COL5A1P20908 SGMS2-202ENST00000394684 6149 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
COL5A1P20908 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC5.9□□□□□ -1.47
COL5A1P20908 L3MBTL3-201ENST00000361794 4217 ntAPPRIS P4 TSL 5 BASIC5.9□□□□□ -1.47
COL5A1P20908 SPEF2-211ENST00000509059 4707 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.47
COL5A1P20908 CARD8-202ENST00000391898 5263 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.47
COL5A1P20908 ZNF28-201ENST00000339844 650 ntTSL 4 BASIC5.9□□□□□ -1.47
COL5A1P20908 AL353626.3-201ENST00000413399 657 ntBASIC5.9□□□□□ -1.47
COL5A1P20908 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC5.9□□□□□ -1.47
COL5A1P20908 H2AFZP6-201ENST00000444403 394 ntBASIC5.9□□□□□ -1.47
COL5A1P20908 AC073909.1-201ENST00000447112 999 ntBASIC5.9□□□□□ -1.47
COL5A1P20908 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC5.9□□□□□ -1.47
COL5A1P20908 LINC01831-201ENST00000449772 493 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
COL5A1P20908 COPS8P2-201ENST00000473228 627 ntBASIC5.9□□□□□ -1.47
COL5A1P20908 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC5.9□□□□□ -1.47
COL5A1P20908 LINC01151-201ENST00000521608 571 ntTSL 4 BASIC5.9□□□□□ -1.47
COL5A1P20908 MIR4301-201ENST00000577203 66 ntBASIC5.9□□□□□ -1.47
COL5A1P20908 AL136359.1-201ENST00000625090 565 ntTSL 2 BASIC5.9□□□□□ -1.47
COL5A1P20908 ZNF720-202ENST00000398696 1339 ntTSL 4 BASIC5.9□□□□□ -1.47
COL5A1P20908 CCR9-204ENST00000422395 1331 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
COL5A1P20908 RBPJP7-201ENST00000442803 1447 ntBASIC5.89□□□□□ -1.47
COL5A1P20908 RBPJP5-201ENST00000449433 1447 ntBASIC5.89□□□□□ -1.47
COL5A1P20908 BICC1-202ENST00000373886 5475 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL5A1P20908 TNRC6A-202ENST00000395799 8438 ntAPPRIS P3 TSL 5 BASIC5.89□□□□□ -1.47
COL5A1P20908 HMCN2-206ENST00000624552 15610 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
COL5A1P20908 ZC3H11B-202ENST00000636126 4432 ntAPPRIS ALT1 TSL 2 BASIC5.89□□□□□ -1.47
COL5A1P20908 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL5A1P20908 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL5A1P20908 SUPT6H-201ENST00000314616 6523 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL5A1P20908 AC008147.2-201ENST00000552061 4713 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL5A1P20908 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL5A1P20908 SECISBP2L-201ENST00000261847 6779 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL5A1P20908 PPFIA2-201ENST00000333447 5517 ntTSL 5 BASIC5.89□□□□□ -1.47
COL5A1P20908 CFLAR-201ENST00000309955 14672 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL5A1P20908 PAPOLG-201ENST00000238714 4263 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL5A1P20908 TRAM2-201ENST00000182527 6908 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL5A1P20908 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL5A1P20908 HOOK3-201ENST00000307602 14398 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL5A1P20908 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC5.89□□□□□ -1.47
COL5A1P20908 MED12-202ENST00000374080 6795 ntAPPRIS P2 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL5A1P20908 AC079777.1-201ENST00000623836 1953 ntBASIC5.89□□□□□ -1.47
COL5A1P20908 RNA5SP350-201ENST00000363298 111 ntBASIC5.89□□□□□ -1.47
COL5A1P20908 RNU6-171P-201ENST00000384354 107 ntBASIC5.89□□□□□ -1.47
COL5A1P20908 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC5.89□□□□□ -1.47
COL5A1P20908 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC5.89□□□□□ -1.47
COL5A1P20908 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC5.89□□□□□ -1.47
COL5A1P20908 BX323845.3-201ENST00000428215 527 ntBASIC5.89□□□□□ -1.47
COL5A1P20908 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC5.89□□□□□ -1.47
COL5A1P20908 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC5.89□□□□□ -1.47
COL5A1P20908 SEPT14P12-201ENST00000442280 560 ntBASIC5.89□□□□□ -1.47
COL5A1P20908 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC5.89□□□□□ -1.47
COL5A1P20908 AC105420.1-201ENST00000504389 582 ntBASIC5.89□□□□□ -1.47
COL5A1P20908 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC5.89□□□□□ -1.47
COL5A1P20908 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC5.89□□□□□ -1.47
COL5A1P20908 MYL6-213ENST00000549017 502 ntTSL 3 BASIC5.89□□□□□ -1.47
COL5A1P20908 AC092944.2-201ENST00000605443 889 ntBASIC5.89□□□□□ -1.47
COL5A1P20908 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC5.89□□□□□ -1.47
COL5A1P20908 AC118658.2-201ENST00000618697 459 ntBASIC5.89□□□□□ -1.47
COL5A1P20908 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC5.89□□□□□ -1.47
COL5A1P20908 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC5.89□□□□□ -1.47
COL5A1P20908 NEPNP-201ENST00000404786 1371 ntBASIC5.89□□□□□ -1.47
COL5A1P20908 TRPM3-204ENST00000360823 5966 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
COL5A1P20908 AC127070.3-201ENST00000503695 3263 ntBASIC5.89□□□□□ -1.47
COL5A1P20908 ABI1-207ENST00000376142 3576 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms