Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AC137056.2-201ENST00000624055 1958 ntBASIC6.13□□□□□ -1.43
SHMT2P34897 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC6.13□□□□□ -1.43
SHMT2P34897 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
SHMT2P34897 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
SHMT2P34897 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
SHMT2P34897 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC6.13□□□□□ -1.43
SHMT2P34897 AL359976.1-201ENST00000418655 3528 ntBASIC6.13□□□□□ -1.43
SHMT2P34897 ZNF426-202ENST00000535489 2375 ntAPPRIS P3 TSL 1 (best) BASIC6.13□□□□□ -1.43
SHMT2P34897 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
SHMT2P34897 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
SHMT2P34897 OR51J1-201ENST00000332043 951 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
SHMT2P34897 TRIM69-202ENST00000338264 1222 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
SHMT2P34897 RNA5SP232-201ENST00000364144 119 ntBASIC6.13□□□□□ -1.43
SHMT2P34897 RN7SKP171-201ENST00000364417 303 ntBASIC6.13□□□□□ -1.43
SHMT2P34897 RN7SKP237-201ENST00000364663 301 ntBASIC6.13□□□□□ -1.43
SHMT2P34897 LCN1P2-201ENST00000372030 223 ntBASIC6.13□□□□□ -1.43
SHMT2P34897 AC024601.1-201ENST00000427247 524 ntTSL 3 BASIC6.13□□□□□ -1.43
SHMT2P34897 BX679664.2-201ENST00000439282 283 ntBASIC6.13□□□□□ -1.43
SHMT2P34897 AL358074.1-201ENST00000444800 509 ntTSL 2 BASIC6.13□□□□□ -1.43
SHMT2P34897 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
SHMT2P34897 AC019084.1-201ENST00000457337 432 ntBASIC6.13□□□□□ -1.43
SHMT2P34897 RARRES2P3-201ENST00000457739 473 ntBASIC6.13□□□□□ -1.43
SHMT2P34897 LINC01214-201ENST00000471222 335 ntTSL 5 BASIC6.13□□□□□ -1.43
SHMT2P34897 OR4D12P-201ENST00000509361 911 ntBASIC6.13□□□□□ -1.43
SHMT2P34897 OR51A1P-201ENST00000511110 946 ntBASIC6.13□□□□□ -1.43
SHMT2P34897 NPIPB14P-203ENST00000532298 987 ntBASIC6.13□□□□□ -1.43
SHMT2P34897 AP001893.3-201ENST00000532357 569 ntTSL 4 BASIC6.13□□□□□ -1.43
SHMT2P34897 AC073916.1-201ENST00000545095 130 ntBASIC6.13□□□□□ -1.43
SHMT2P34897 AC092652.2-201ENST00000552220 622 ntTSL 4 BASIC6.13□□□□□ -1.43
SHMT2P34897 AL132989.1-201ENST00000557322 576 ntTSL 3 BASIC6.13□□□□□ -1.43
SHMT2P34897 Z99755.2-201ENST00000610215 364 ntTSL 3 BASIC6.13□□□□□ -1.43
SHMT2P34897 AL135999.3-201ENST00000610501 812 ntBASIC6.13□□□□□ -1.43
SHMT2P34897 CASC19-274ENST00000642018 970 ntBASIC6.13□□□□□ -1.43
SHMT2P34897 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC6.13□□□□□ -1.43
SHMT2P34897 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC6.13□□□□□ -1.43
SHMT2P34897 LINC01224-203ENST00000596283 2766 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
SHMT2P34897 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
SHMT2P34897 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
SHMT2P34897 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
SHMT2P34897 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC6.13□□□□□ -1.43
SHMT2P34897 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
SHMT2P34897 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
SHMT2P34897 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
SHMT2P34897 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC6.13□□□□□ -1.43
SHMT2P34897 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
SHMT2P34897 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC6.13□□□□□ -1.43
SHMT2P34897 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC6.13□□□□□ -1.43
SHMT2P34897 AC011815.2-201ENST00000618230 2021 ntBASIC6.13□□□□□ -1.43
SHMT2P34897 ZSCAN4-201ENST00000318203 2246 ntAPPRIS P1 TSL 2 BASIC6.13□□□□□ -1.43
SHMT2P34897 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC6.13□□□□□ -1.43
SHMT2P34897 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SHMT2P34897 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
SHMT2P34897 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
SHMT2P34897 GNRHR-201ENST00000226413 2164 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SHMT2P34897 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SHMT2P34897 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
SHMT2P34897 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SHMT2P34897 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
SHMT2P34897 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SHMT2P34897 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC6.12□□□□□ -1.43
SHMT2P34897 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SHMT2P34897 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SHMT2P34897 MGST1-205ENST00000396210 914 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SHMT2P34897 AL157702.1-201ENST00000398764 426 ntBASIC6.12□□□□□ -1.43
SHMT2P34897 AC104777.1-202ENST00000413247 774 ntTSL 5 BASIC6.12□□□□□ -1.43
SHMT2P34897 UBE2V1P14-201ENST00000415815 558 ntBASIC6.12□□□□□ -1.43
SHMT2P34897 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
SHMT2P34897 OSBPL10-AS1-203ENST00000428872 538 ntTSL 3 BASIC6.12□□□□□ -1.43
SHMT2P34897 IGLV3-4-201ENST00000432300 244 ntBASIC6.12□□□□□ -1.43
SHMT2P34897 AC094019.1-201ENST00000434678 472 ntBASIC6.12□□□□□ -1.43
SHMT2P34897 EEF1B2P3-201ENST00000447718 678 ntBASIC6.12□□□□□ -1.43
SHMT2P34897 SAMD3-205ENST00000457563 1877 ntTSL 2 BASIC6.12□□□□□ -1.43
SHMT2P34897 TNS3-209ENST00000458317 1156 ntTSL 5 BASIC6.12□□□□□ -1.43
SHMT2P34897 SLC25A51P1-201ENST00000468432 871 ntBASIC6.12□□□□□ -1.43
SHMT2P34897 RN7SL741P-201ENST00000482473 289 ntBASIC6.12□□□□□ -1.43
SHMT2P34897 RN7SL104P-201ENST00000498686 293 ntBASIC6.12□□□□□ -1.43
SHMT2P34897 AC104078.2-201ENST00000504344 541 ntTSL 5 BASIC6.12□□□□□ -1.43
SHMT2P34897 AC122718.2-201ENST00000505325 591 ntBASIC6.12□□□□□ -1.43
SHMT2P34897 USP17L23-201ENST00000506619 551 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
SHMT2P34897 ZFPM2-AS1-201ENST00000509144 542 ntTSL 3 BASIC6.12□□□□□ -1.43
SHMT2P34897 SNX18P25-201ENST00000510539 758 ntBASIC6.12□□□□□ -1.43
SHMT2P34897 AC108103.1-201ENST00000511286 446 ntBASIC6.12□□□□□ -1.43
SHMT2P34897 RNA5SP206-201ENST00000516703 121 ntBASIC6.12□□□□□ -1.43
SHMT2P34897 RNA5SP441-201ENST00000516809 88 ntBASIC6.12□□□□□ -1.43
SHMT2P34897 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
SHMT2P34897 GABRA3-204ENST00000535043 1697 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SHMT2P34897 MAGOHB-204ENST00000539554 666 ntTSL 3 BASIC6.12□□□□□ -1.43
SHMT2P34897 AL049829.2-201ENST00000554010 285 ntTSL 3 BASIC6.12□□□□□ -1.43
SHMT2P34897 LINC02310-201ENST00000556762 572 ntTSL 4 BASIC6.12□□□□□ -1.43
SHMT2P34897 AC104151.1-201ENST00000563764 323 ntAPPRIS P1 TSL 3 BASIC6.12□□□□□ -1.43
SHMT2P34897 AC005736.2-201ENST00000571302 774 ntTSL 2 BASIC6.12□□□□□ -1.43
SHMT2P34897 SMIM12P1-201ENST00000603004 274 ntBASIC6.12□□□□□ -1.43
SHMT2P34897 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC6.12□□□□□ -1.43
SHMT2P34897 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC6.12□□□□□ -1.43
SHMT2P34897 MIR6806-201ENST00000622141 64 ntBASIC6.12□□□□□ -1.43
SHMT2P34897 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SHMT2P34897 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC6.12□□□□□ -1.43
SHMT2P34897 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
SHMT2P34897 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
SHMT2P34897 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 71.1 ms