Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC092821.3-202ENST00000641304 2767 ntBASIC7.41□□□□□ -1.22
COL6A1P12109 MYO6-208ENST00000627432 4074 ntTSL 5 BASIC7.41□□□□□ -1.22
COL6A1P12109 AC073342.2-201ENST00000595842 1800 ntBASIC7.41□□□□□ -1.22
COL6A1P12109 RORA-201ENST00000261523 1951 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
COL6A1P12109 CA1-225ENST00000626824 2405 ntTSL 5 BASIC7.4□□□□□ -1.22
COL6A1P12109 STAG1-201ENST00000236698 5951 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
COL6A1P12109 ITSN1-206ENST00000381318 17015 ntAPPRIS P3 TSL 1 (best) BASIC7.4□□□□□ -1.22
COL6A1P12109 HYDIN-206ENST00000393567 15719 ntAPPRIS ALT2 TSL 5 BASIC7.4□□□□□ -1.22
COL6A1P12109 TRIM6-205ENST00000445329 2951 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
COL6A1P12109 MBD5-201ENST00000404807 5920 ntTSL 5 BASIC7.4□□□□□ -1.22
COL6A1P12109 OPALIN-204ENST00000419479 3581 ntTSL 2 BASIC7.4□□□□□ -1.22
COL6A1P12109 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC7.4□□□□□ -1.22
COL6A1P12109 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC7.4□□□□□ -1.22
COL6A1P12109 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
COL6A1P12109 OSTCP4-201ENST00000424397 449 ntBASIC7.4□□□□□ -1.22
COL6A1P12109 USP12PY-201ENST00000427677 1064 ntBASIC7.4□□□□□ -1.22
COL6A1P12109 HMGB3P5-201ENST00000428894 612 ntBASIC7.4□□□□□ -1.22
COL6A1P12109 MTCO1P57-201ENST00000432182 261 ntBASIC7.4□□□□□ -1.22
COL6A1P12109 RPL23AP19-201ENST00000436229 369 ntBASIC7.4□□□□□ -1.22
COL6A1P12109 CLDN34-201ENST00000445307 995 ntAPPRIS P1 BASIC7.4□□□□□ -1.22
COL6A1P12109 AC010240.2-201ENST00000445363 1205 ntBASIC7.4□□□□□ -1.22
COL6A1P12109 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC7.4□□□□□ -1.22
COL6A1P12109 MTND6P5-201ENST00000448266 512 ntBASIC7.4□□□□□ -1.22
COL6A1P12109 SPANXB1-201ENST00000449283 469 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
COL6A1P12109 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC7.4□□□□□ -1.22
COL6A1P12109 NXT1P1-201ENST00000458481 316 ntBASIC7.4□□□□□ -1.22
COL6A1P12109 RN7SL870P-201ENST00000460111 296 ntBASIC7.4□□□□□ -1.22
COL6A1P12109 H3F3AP3-201ENST00000497682 407 ntBASIC7.4□□□□□ -1.22
COL6A1P12109 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC7.4□□□□□ -1.22
COL6A1P12109 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC7.4□□□□□ -1.22
COL6A1P12109 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC7.4□□□□□ -1.22
COL6A1P12109 AC087855.2-201ENST00000518217 537 ntTSL 3 BASIC7.4□□□□□ -1.22
COL6A1P12109 IGKV3D-25-201ENST00000519599 235 ntBASIC7.4□□□□□ -1.22
COL6A1P12109 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC7.4□□□□□ -1.22
COL6A1P12109 AC036111.2-201ENST00000533247 901 ntBASIC7.4□□□□□ -1.22
COL6A1P12109 AC084816.1-202ENST00000536744 647 ntTSL 2 BASIC7.4□□□□□ -1.22
COL6A1P12109 APAF1-211ENST00000552268 1143 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
COL6A1P12109 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC7.4□□□□□ -1.22
COL6A1P12109 NR2F2-AS1-209ENST00000560800 549 ntTSL 4 BASIC7.4□□□□□ -1.22
COL6A1P12109 AC138811.2-201ENST00000567078 764 ntAPPRIS P1 TSL 3 BASIC7.4□□□□□ -1.22
COL6A1P12109 LINC00556-201ENST00000569603 412 ntBASIC7.4□□□□□ -1.22
COL6A1P12109 PPP4R1-AS1-201ENST00000582435 379 ntTSL 2 BASIC7.4□□□□□ -1.22
COL6A1P12109 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC7.4□□□□□ -1.22
COL6A1P12109 LINC00907-202ENST00000585639 915 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
COL6A1P12109 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC7.4□□□□□ -1.22
COL6A1P12109 AC100767.2-201ENST00000604840 693 ntBASIC7.4□□□□□ -1.22
COL6A1P12109 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC7.4□□□□□ -1.22
COL6A1P12109 AC026951.2-201ENST00000613847 241 ntBASIC7.4□□□□□ -1.22
COL6A1P12109 AC092683.1-207ENST00000620051 837 ntTSL 2 BASIC7.4□□□□□ -1.22
COL6A1P12109 DCHS2-207ENST00000623607 8912 ntAPPRIS P2 TSL 1 (best) BASIC7.4□□□□□ -1.22
COL6A1P12109 GCNT2-218ENST00000640968 939 ntTSL 5 BASIC7.4□□□□□ -1.22
COL6A1P12109 SLC9B1P1-201ENST00000331172 1337 ntBASIC7.4□□□□□ -1.22
COL6A1P12109 RARSP1-201ENST00000542842 1418 ntBASIC7.4□□□□□ -1.22
COL6A1P12109 AC121761.1-201ENST00000547326 1482 ntTSL 3 BASIC7.4□□□□□ -1.22
COL6A1P12109 SLMAP-202ENST00000295952 4420 ntAPPRIS P1 TSL 2 BASIC7.4□□□□□ -1.22
COL6A1P12109 FCHSD2-203ENST00000409314 4509 ntTSL 5 BASIC7.4□□□□□ -1.22
COL6A1P12109 CHCHD7-203ENST00000396723 1550 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
COL6A1P12109 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC7.4□□□□□ -1.22
COL6A1P12109 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC7.4□□□□□ -1.23
COL6A1P12109 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC7.4□□□□□ -1.23
COL6A1P12109 AC116158.1-201ENST00000560231 2129 ntBASIC7.4□□□□□ -1.23
COL6A1P12109 LINC00184-201ENST00000429269 2270 ntTSL 2 BASIC7.4□□□□□ -1.23
COL6A1P12109 AC019197.1-202ENST00000414885 2639 ntTSL 5 BASIC7.4□□□□□ -1.23
COL6A1P12109 SIRPG-AS1-202ENST00000456177 2795 ntTSL 2 BASIC7.4□□□□□ -1.23
COL6A1P12109 EHBP1-203ENST00000405289 3591 ntTSL 1 (best) BASIC7.4□□□□□ -1.23
COL6A1P12109 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC7.4□□□□□ -1.23
COL6A1P12109 ZNF484-204ENST00000395506 4031 ntTSL 3 BASIC7.4□□□□□ -1.23
COL6A1P12109 KIAA1549L-201ENST00000265654 4492 ntAPPRIS ALT2 TSL 2 BASIC7.4□□□□□ -1.23
COL6A1P12109 PRKCA-202ENST00000413366 8751 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.23
COL6A1P12109 HEATR1-202ENST00000366581 6538 ntTSL 5 BASIC7.39□□□□□ -1.23
COL6A1P12109 C18orf54-206ENST00000620105 5693 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
COL6A1P12109 AADACL3-201ENST00000359318 3662 ntAPPRIS P1 TSL 3 BASIC7.39□□□□□ -1.23
COL6A1P12109 OR7G2-202ENST00000641081 3015 ntAPPRIS ALT2 BASIC7.39□□□□□ -1.23
COL6A1P12109 MRPS27-201ENST00000261413 2785 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
COL6A1P12109 AL589993.1-201ENST00000407450 2524 ntBASIC7.39□□□□□ -1.23
COL6A1P12109 LMO7-202ENST00000341547 7237 ntAPPRIS P3 TSL 1 (best) BASIC7.39□□□□□ -1.23
COL6A1P12109 CU633906.1-201ENST00000621924 2380 ntTSL 3 BASIC7.39□□□□□ -1.23
COL6A1P12109 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC7.39□□□□□ -1.23
COL6A1P12109 ADGRL3-205ENST00000506746 4935 ntAPPRIS ALT2 TSL 5 BASIC7.39□□□□□ -1.23
COL6A1P12109 TCF12-213ENST00000559703 1544 ntTSL 5 BASIC7.39□□□□□ -1.23
COL6A1P12109 PAPOLG-201ENST00000238714 4263 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
COL6A1P12109 SSX5-201ENST00000311798 1384 ntAPPRIS P4 TSL 5 BASIC7.39□□□□□ -1.23
COL6A1P12109 IFNK-201ENST00000276943 1140 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
COL6A1P12109 RAET1L-201ENST00000286380 802 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
COL6A1P12109 AC023490.2-201ENST00000359859 470 ntBASIC7.39□□□□□ -1.23
COL6A1P12109 AL512622.1-201ENST00000414106 481 ntTSL 3 BASIC7.39□□□□□ -1.23
COL6A1P12109 CD33-203ENST00000421133 1023 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
COL6A1P12109 OR2X1P-201ENST00000421144 687 ntBASIC7.39□□□□□ -1.23
COL6A1P12109 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC7.39□□□□□ -1.23
COL6A1P12109 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC7.39□□□□□ -1.23
COL6A1P12109 AC114814.1-201ENST00000444926 691 ntTSL 3 BASIC7.39□□□□□ -1.23
COL6A1P12109 AC097463.1-201ENST00000447288 481 ntBASIC7.39□□□□□ -1.23
COL6A1P12109 AC108751.3-201ENST00000461814 1020 ntBASIC7.39□□□□□ -1.23
COL6A1P12109 VAMP3-202ENST00000470357 954 ntTSL 3 BASIC7.39□□□□□ -1.23
COL6A1P12109 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC7.39□□□□□ -1.23
COL6A1P12109 RPS4XP14-201ENST00000493072 781 ntBASIC7.39□□□□□ -1.23
COL6A1P12109 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC7.39□□□□□ -1.23
COL6A1P12109 AP001960.1-201ENST00000506494 658 ntBASIC7.39□□□□□ -1.23
COL6A1P12109 SNX24-205ENST00000506996 588 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
COL6A1P12109 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC7.39□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms