Protein–RNA interactions for Protein: Q96JB5

CDK5RAP3, CDK5 regulatory subunit-associated protein 3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3Q96JB5 BTN3A2-201ENST00000356386 3017 ntAPPRIS P3 TSL 5 BASIC7.29□□□□□ -1.24
CDK5RAP3Q96JB5 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC7.29□□□□□ -1.24
CDK5RAP3Q96JB5 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
CDK5RAP3Q96JB5 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC7.29□□□□□ -1.24
CDK5RAP3Q96JB5 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC7.29□□□□□ -1.24
CDK5RAP3Q96JB5 SP110-204ENST00000392048 1937 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
CDK5RAP3Q96JB5 ARL14EPL-201ENST00000601302 1914 ntAPPRIS P1 TSL 5 BASIC7.29□□□□□ -1.24
CDK5RAP3Q96JB5 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
CDK5RAP3Q96JB5 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC7.28□□□□□ -1.24
CDK5RAP3Q96JB5 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
CDK5RAP3Q96JB5 CACNA2D3-210ENST00000490478 3557 ntAPPRIS ALT2 TSL 1 (best) BASIC7.28□□□□□ -1.24
CDK5RAP3Q96JB5 ZNF227-202ENST00000391961 2993 ntTSL 4 BASIC7.28□□□□□ -1.24
CDK5RAP3Q96JB5 AL731556.1-201ENST00000394628 3711 ntBASIC7.28□□□□□ -1.24
CDK5RAP3Q96JB5 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
CDK5RAP3Q96JB5 FAM183A-201ENST00000335282 488 ntAPPRIS P1 TSL 2 BASIC7.28□□□□□ -1.24
CDK5RAP3Q96JB5 Y_RNA.110-201ENST00000363220 99 ntBASIC7.28□□□□□ -1.24
CDK5RAP3Q96JB5 PRR9-201ENST00000368744 1229 ntAPPRIS P1 TSL 5 BASIC7.28□□□□□ -1.24
CDK5RAP3Q96JB5 SNORD94-201ENST00000386037 137 ntBASIC7.28□□□□□ -1.24
CDK5RAP3Q96JB5 AL033519.1-201ENST00000407266 307 ntBASIC7.28□□□□□ -1.24
CDK5RAP3Q96JB5 FAM183A-205ENST00000410048 500 ntTSL 3 BASIC7.28□□□□□ -1.24
CDK5RAP3Q96JB5 AL590623.1-201ENST00000427864 105 ntBASIC7.28□□□□□ -1.24
CDK5RAP3Q96JB5 COL11A2P1-205ENST00000441798 676 ntBASIC7.28□□□□□ -1.24
CDK5RAP3Q96JB5 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC7.28□□□□□ -1.24
CDK5RAP3Q96JB5 KCNIP2-211ENST00000461105 858 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
CDK5RAP3Q96JB5 AP003385.3-201ENST00000472498 287 ntBASIC7.28□□□□□ -1.24
CDK5RAP3Q96JB5 MTND3P3-201ENST00000505004 126 ntBASIC7.28□□□□□ -1.24
CDK5RAP3Q96JB5 ATP6V0E1-202ENST00000517669 502 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
CDK5RAP3Q96JB5 AC113191.1-201ENST00000517759 403 ntBASIC7.28□□□□□ -1.24
CDK5RAP3Q96JB5 KCTD9P6-201ENST00000522306 950 ntBASIC7.28□□□□□ -1.24
CDK5RAP3Q96JB5 AC084337.1-201ENST00000524809 686 ntBASIC7.28□□□□□ -1.24
CDK5RAP3Q96JB5 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC7.28□□□□□ -1.24
CDK5RAP3Q96JB5 AL133163.3-201ENST00000556448 504 ntTSL 5 BASIC7.28□□□□□ -1.24
CDK5RAP3Q96JB5 MIR4732-201ENST00000581873 76 ntBASIC7.28□□□□□ -1.24
CDK5RAP3Q96JB5 CHMP1B-AS1-201ENST00000586474 553 ntTSL 4 BASIC7.28□□□□□ -1.24
CDK5RAP3Q96JB5 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC7.28□□□□□ -1.24
CDK5RAP3Q96JB5 AC004805.3-201ENST00000603178 310 ntBASIC7.28□□□□□ -1.24
CDK5RAP3Q96JB5 AC015802.5-201ENST00000607478 399 ntBASIC7.28□□□□□ -1.24
CDK5RAP3Q96JB5 CASC22-202ENST00000628396 802 ntTSL 5 BASIC7.28□□□□□ -1.24
CDK5RAP3Q96JB5 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC7.28□□□□□ -1.24
CDK5RAP3Q96JB5 AC114876.1-201ENST00000490962 1366 ntBASIC7.28□□□□□ -1.24
CDK5RAP3Q96JB5 NFIA-201ENST00000357977 3200 ntTSL 2 BASIC7.28□□□□□ -1.24
CDK5RAP3Q96JB5 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
CDK5RAP3Q96JB5 DDX47-201ENST00000352940 1698 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
CDK5RAP3Q96JB5 NRP1-205ENST00000374823 3737 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
CDK5RAP3Q96JB5 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC7.28□□□□□ -1.24
CDK5RAP3Q96JB5 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
CDK5RAP3Q96JB5 NEK2P2-201ENST00000438441 1338 ntBASIC7.27□□□□□ -1.24
CDK5RAP3Q96JB5 AC126755.2-201ENST00000545114 1522 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 AC022507.1-201ENST00000548349 1505 ntBASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 HHLA3-201ENST00000359875 898 ntAPPRIS ALT2 TSL 1 (best) BASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 AL391419.1-201ENST00000398901 1275 ntBASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 AL589994.1-201ENST00000404962 340 ntBASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 AC007966.1-201ENST00000421998 1179 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 AL050344.1-201ENST00000424084 490 ntTSL 3 BASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 AL390879.2-203ENST00000426943 1121 ntBASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 MTCO1P57-201ENST00000432182 261 ntBASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 ZFAND6P1-201ENST00000434138 605 ntBASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 AC022498.1-201ENST00000449845 696 ntTSL 3 BASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 CCNJP2-201ENST00000457810 1163 ntBASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 TRBV8-1-201ENST00000481590 279 ntBASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 RNU6-943P-201ENST00000516960 98 ntBASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 LINC01484-201ENST00000517733 555 ntTSL 4 BASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 AC019227.1-201ENST00000526902 510 ntBASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 AC020611.2-201ENST00000535594 671 ntTSL 3 BASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 TMEM116-208ENST00000549537 1229 ntAPPRIS ALT2 TSL 2 BASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 RPL3P13-201ENST00000550415 216 ntBASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 RNASE11-208ENST00000555841 886 ntAPPRIS P2 TSL 1 (best) BASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 AC103740.1-202ENST00000558404 542 ntTSL 4 BASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 CAPN3-210ENST00000561817 915 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 AC020909.2-201ENST00000595005 626 ntTSL 2 BASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 AL513218.1-201ENST00000606527 391 ntBASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 LY86-AS1-206ENST00000607278 677 ntTSL 3 BASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 AL008582.1-201ENST00000609612 442 ntBASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 AC096586.2-201ENST00000610260 441 ntBASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 SMR3B-204ENST00000614072 783 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 AC009120.7-201ENST00000623452 780 ntBASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 PLEKHA5-216ENST00000540972 1954 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 AL353763.1-201ENST00000624467 1628 ntBASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 AC005702.3-201ENST00000585345 1447 ntBASIC7.27□□□□□ -1.25
CDK5RAP3Q96JB5 PPFIA2-203ENST00000443686 3782 ntTSL 2 BASIC7.26□□□□□ -1.25
CDK5RAP3Q96JB5 NLRC4-202ENST00000360906 3359 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
CDK5RAP3Q96JB5 CEACAM5-202ENST00000398599 2451 ntAPPRIS ALT2 TSL 5 BASIC7.26□□□□□ -1.25
CDK5RAP3Q96JB5 EXD1-202ENST00000458580 2177 ntAPPRIS ALT2 TSL 2 BASIC7.26□□□□□ -1.25
CDK5RAP3Q96JB5 TMC1-201ENST00000297784 3201 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
CDK5RAP3Q96JB5 AC005261.2-201ENST00000593427 4258 ntBASIC7.26□□□□□ -1.25
CDK5RAP3Q96JB5 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC7.26□□□□□ -1.25
CDK5RAP3Q96JB5 ACPP-202ENST00000351273 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC7.26□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms