Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC8.65□□□□□ -1.02
MSH6P52701 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC8.65□□□□□ -1.02
MSH6P52701 AL513283.1-203ENST00000640010 891 ntTSL 5 BASIC8.65□□□□□ -1.02
MSH6P52701 HEPACAM2-201ENST00000341723 2122 ntAPPRIS P3 TSL 1 (best) BASIC8.65□□□□□ -1.02
MSH6P52701 STAMBPL1-201ENST00000371922 1899 ntTSL 2 BASIC8.65□□□□□ -1.02
MSH6P52701 UGT3A1-207ENST00000625798 3097 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
MSH6P52701 EZH1-202ENST00000428826 4623 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
MSH6P52701 REV3L-203ENST00000368805 10461 ntAPPRIS P1 TSL 5 BASIC8.65□□□□□ -1.02
MSH6P52701 TAOK1-202ENST00000536202 4068 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
MSH6P52701 ZNF83-205ENST00000594682 2890 ntTSL 4 BASIC8.65□□□□□ -1.03
MSH6P52701 ALS2-201ENST00000264276 6644 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.03
MSH6P52701 ZHX3-201ENST00000309060 10030 ntAPPRIS P1 TSL 5 BASIC8.65□□□□□ -1.03
MSH6P52701 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC8.65□□□□□ -1.03
MSH6P52701 FAM71F1-209ENST00000621392 1591 ntTSL 5 BASIC8.65□□□□□ -1.03
MSH6P52701 CNTRL-207ENST00000373855 7660 ntAPPRIS P1 TSL 5 BASIC8.65□□□□□ -1.03
MSH6P52701 GRIA4-212ENST00000530497 5059 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.03
MSH6P52701 TDP1-213ENST00000555880 1894 ntTSL 5 BASIC8.64□□□□□ -1.03
MSH6P52701 GPR155-206ENST00000614352 7321 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
MSH6P52701 MR1-204ENST00000367580 7704 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
MSH6P52701 MTHFD2P5-201ENST00000320415 844 ntBASIC8.64□□□□□ -1.03
MSH6P52701 RNA5SP46-201ENST00000362370 120 ntBASIC8.64□□□□□ -1.03
MSH6P52701 MRM2-202ENST00000407040 582 ntTSL 3 BASIC8.64□□□□□ -1.03
MSH6P52701 RNU4ATAC2P-201ENST00000408674 126 ntBASIC8.64□□□□□ -1.03
MSH6P52701 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC8.64□□□□□ -1.03
MSH6P52701 CYCSP52-201ENST00000422857 310 ntBASIC8.64□□□□□ -1.03
MSH6P52701 SPRYD7P1-201ENST00000443861 570 ntBASIC8.64□□□□□ -1.03
MSH6P52701 AC074087.1-201ENST00000512059 724 ntBASIC8.64□□□□□ -1.03
MSH6P52701 AC090709.1-201ENST00000548384 716 ntTSL 3 BASIC8.64□□□□□ -1.03
MSH6P52701 Z98949.1-228ENST00000595093 798 ntTSL 5 BASIC8.64□□□□□ -1.03
MSH6P52701 GTF2E1-201ENST00000283875 3012 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
MSH6P52701 RAP1GDS1-204ENST00000408900 1942 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
MSH6P52701 CDON-201ENST00000263577 4186 ntAPPRIS P3 TSL 1 (best) BASIC8.64□□□□□ -1.03
MSH6P52701 PGK2-201ENST00000304801 1657 ntAPPRIS P1 BASIC8.64□□□□□ -1.03
MSH6P52701 HYDIN2-203ENST00000614586 13885 ntBASIC8.64□□□□□ -1.03
MSH6P52701 UTP14C-201ENST00000521776 5529 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
MSH6P52701 HDAC9-202ENST00000405010 4239 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
MSH6P52701 AC024651.2-201ENST00000562480 2098 ntBASIC8.64□□□□□ -1.03
MSH6P52701 RBFOX2-205ENST00000405409 6932 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
MSH6P52701 CEBPZOS-204ENST00000402297 3158 ntAPPRIS P1 TSL 2 BASIC8.64□□□□□ -1.03
MSH6P52701 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC8.63□□□□□ -1.03
MSH6P52701 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC8.63□□□□□ -1.03
MSH6P52701 DIAPH3-206ENST00000465066 2735 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
MSH6P52701 UBA2-202ENST00000439527 2802 ntTSL 2 BASIC8.63□□□□□ -1.03
MSH6P52701 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
MSH6P52701 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
MSH6P52701 SNORA64.1-201ENST00000362600 132 ntBASIC8.63□□□□□ -1.03
MSH6P52701 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC8.63□□□□□ -1.03
MSH6P52701 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
MSH6P52701 RNU1-46P-201ENST00000384425 164 ntBASIC8.63□□□□□ -1.03
MSH6P52701 AL391422.1-201ENST00000402155 436 ntBASIC8.63□□□□□ -1.03
MSH6P52701 C9orf147-201ENST00000412934 584 ntTSL 3 BASIC8.63□□□□□ -1.03
MSH6P52701 AC096537.2-201ENST00000413707 714 ntBASIC8.63□□□□□ -1.03
MSH6P52701 AC091390.2-201ENST00000432573 374 ntBASIC8.63□□□□□ -1.03
MSH6P52701 LINC01013-203ENST00000443303 569 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
MSH6P52701 AL445466.1-201ENST00000448432 357 ntBASIC8.63□□□□□ -1.03
MSH6P52701 OTX2P1-201ENST00000450956 354 ntBASIC8.63□□□□□ -1.03
MSH6P52701 AC016813.1-201ENST00000521511 735 ntTSL 3 BASIC8.63□□□□□ -1.03
MSH6P52701 OR4A13P-201ENST00000529316 942 ntBASIC8.63□□□□□ -1.03
MSH6P52701 AC108136.1-201ENST00000530350 631 ntTSL 5 BASIC8.63□□□□□ -1.03
MSH6P52701 PCNAP4-201ENST00000532690 730 ntBASIC8.63□□□□□ -1.03
MSH6P52701 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC8.63□□□□□ -1.03
MSH6P52701 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC8.63□□□□□ -1.03
MSH6P52701 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC8.63□□□□□ -1.03
MSH6P52701 MIR4505-201ENST00000582238 73 ntBASIC8.63□□□□□ -1.03
MSH6P52701 AL049840.6-201ENST00000604583 345 ntBASIC8.63□□□□□ -1.03
MSH6P52701 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC8.63□□□□□ -1.03
MSH6P52701 AC021766.1-201ENST00000624404 741 ntBASIC8.63□□□□□ -1.03
MSH6P52701 NRK-201ENST00000243300 8062 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
MSH6P52701 GABRA3-204ENST00000535043 1697 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
MSH6P52701 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC8.63□□□□□ -1.03
MSH6P52701 AMY1B-202ENST00000370080 1787 ntAPPRIS P1 TSL 2 BASIC8.63□□□□□ -1.03
MSH6P52701 RPS2P45-201ENST00000469997 2057 ntBASIC8.63□□□□□ -1.03
MSH6P52701 CTAGE11P-201ENST00000451540 2353 ntBASIC8.63□□□□□ -1.03
MSH6P52701 OR2AG2-202ENST00000641124 4224 ntAPPRIS P1 BASIC8.63□□□□□ -1.03
MSH6P52701 OR2AG2-203ENST00000641169 4221 ntAPPRIS P1 BASIC8.63□□□□□ -1.03
MSH6P52701 HTR1D-201ENST00000374619 2835 ntAPPRIS P1 BASIC8.63□□□□□ -1.03
MSH6P52701 KCNMA1-266ENST00000639601 11920 ntAPPRIS ALT2 TSL 5 BASIC8.63□□□□□ -1.03
MSH6P52701 NXF2B-203ENST00000604395 2143 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
MSH6P52701 NXF2-201ENST00000604790 2143 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
MSH6P52701 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC8.63□□□□□ -1.03
MSH6P52701 ZEB2-227ENST00000627532 9541 ntAPPRIS P2 TSL 1 (best) BASIC8.63□□□□□ -1.03
MSH6P52701 GPN1-203ENST00000424214 1725 ntTSL 2 BASIC8.63□□□□□ -1.03
MSH6P52701 AP003119.3-201ENST00000566747 4192 ntBASIC8.63□□□□□ -1.03
MSH6P52701 MTURN-202ENST00000324489 5605 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
MSH6P52701 LINC00624-201ENST00000619867 3088 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
MSH6P52701 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC8.63□□□□□ -1.03
MSH6P52701 IL31RA-201ENST00000297015 2695 ntAPPRIS ALT2 TSL 5 BASIC8.63□□□□□ -1.03
MSH6P52701 NRXN1-211ENST00000406859 2553 ntTSL 5 BASIC8.63□□□□□ -1.03
MSH6P52701 OR2T33-202ENST00000641220 4118 ntAPPRIS P1 BASIC8.63□□□□□ -1.03
MSH6P52701 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
MSH6P52701 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC8.63□□□□□ -1.03
MSH6P52701 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
MSH6P52701 CAST-222ENST00000508579 1758 ntTSL 2 BASIC8.63□□□□□ -1.03
MSH6P52701 AL590542.1-201ENST00000449314 1596 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
MSH6P52701 NREP-206ENST00000447165 2304 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
MSH6P52701 ADGRL3-206ENST00000507164 4982 ntTSL 5 BASIC8.62□□□□□ -1.03
MSH6P52701 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC8.62□□□□□ -1.03
MSH6P52701 TRAV19-201ENST00000390447 467 ntAPPRIS P1 BASIC8.62□□□□□ -1.03
MSH6P52701 OR2AT2P-201ENST00000413438 905 ntBASIC8.62□□□□□ -1.03
MSH6P52701 AC108051.1-201ENST00000435291 549 ntTSL 3 BASIC8.62□□□□□ -1.03
Retrieved 100 of 98,524 protein–RNA pairs in 69.9 ms