Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC019080.2-201ENST00000453859 394 ntBASIC5.4□□□□□ -1.54
HOXA1P49639 NMNAT1P3-201ENST00000457517 888 ntBASIC5.4□□□□□ -1.54
HOXA1P49639 RPS26P11-201ENST00000463445 348 ntBASIC5.4□□□□□ -1.54
HOXA1P49639 RN7SL91P-201ENST00000469313 291 ntBASIC5.4□□□□□ -1.54
HOXA1P49639 SYPL1-205ENST00000470347 1193 ntTSL 3 BASIC5.4□□□□□ -1.54
HOXA1P49639 RPS26P6-201ENST00000475156 348 ntBASIC5.4□□□□□ -1.54
HOXA1P49639 AC025181.1-201ENST00000477507 416 ntBASIC5.4□□□□□ -1.54
HOXA1P49639 ANK3-213ENST00000486349 493 ntTSL 2 BASIC5.4□□□□□ -1.54
HOXA1P49639 RN7SL104P-201ENST00000498686 293 ntBASIC5.4□□□□□ -1.54
HOXA1P49639 AP002026.1-204ENST00000506454 749 ntTSL 3 BASIC5.4□□□□□ -1.54
HOXA1P49639 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
HOXA1P49639 AC005699.1-204ENST00000509244 747 ntTSL 5 BASIC5.4□□□□□ -1.54
HOXA1P49639 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC5.4□□□□□ -1.54
HOXA1P49639 AC138832.1-201ENST00000522871 556 ntBASIC5.4□□□□□ -1.54
HOXA1P49639 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC5.4□□□□□ -1.54
HOXA1P49639 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC5.4□□□□□ -1.54
HOXA1P49639 ELK3-206ENST00000552142 1242 ntTSL 5 BASIC5.4□□□□□ -1.54
HOXA1P49639 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC5.4□□□□□ -1.54
HOXA1P49639 MTND2P13-201ENST00000577438 1039 ntBASIC5.4□□□□□ -1.54
HOXA1P49639 MIR5705-201ENST00000579870 89 ntBASIC5.4□□□□□ -1.54
HOXA1P49639 AC011120.1-201ENST00000583916 624 ntTSL 5 BASIC5.4□□□□□ -1.54
HOXA1P49639 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC5.4□□□□□ -1.54
HOXA1P49639 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC5.4□□□□□ -1.54
HOXA1P49639 AL078623.1-201ENST00000602702 907 ntBASIC5.4□□□□□ -1.54
HOXA1P49639 AC097467.4-201ENST00000605504 141 ntBASIC5.4□□□□□ -1.54
HOXA1P49639 AL022394.1-201ENST00000606979 292 ntBASIC5.4□□□□□ -1.54
HOXA1P49639 AL035587.1-202ENST00000607218 984 ntTSL 3 BASIC5.4□□□□□ -1.54
HOXA1P49639 AL158211.2-201ENST00000607282 395 ntBASIC5.4□□□□□ -1.54
HOXA1P49639 AC015802.5-201ENST00000607478 399 ntBASIC5.4□□□□□ -1.54
HOXA1P49639 AC012640.3-201ENST00000607847 430 ntBASIC5.4□□□□□ -1.54
HOXA1P49639 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
HOXA1P49639 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC5.4□□□□□ -1.54
HOXA1P49639 AMYH02020865.1-207ENST00000617096 458 ntTSL 3 BASIC5.4□□□□□ -1.54
HOXA1P49639 AC244196.5-201ENST00000617347 406 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
HOXA1P49639 pRNA.9-201ENST00000618609 89 ntBASIC5.4□□□□□ -1.54
HOXA1P49639 LINC01141-204ENST00000635564 1008 ntTSL 5 BASIC5.4□□□□□ -1.54
HOXA1P49639 LINC00682-204ENST00000637677 931 ntTSL 5 BASIC5.4□□□□□ -1.54
HOXA1P49639 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.55
HOXA1P49639 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC5.4□□□□□ -1.55
HOXA1P49639 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.55
HOXA1P49639 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
HOXA1P49639 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
HOXA1P49639 KIAA1524-207ENST00000619684 2839 ntAPPRIS ALT1 TSL 5 BASIC5.4□□□□□ -1.55
HOXA1P49639 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC5.4□□□□□ -1.55
HOXA1P49639 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
HOXA1P49639 MYBPC1-223ENST00000553190 3777 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.55
HOXA1P49639 CDC7-201ENST00000234626 3173 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
HOXA1P49639 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.4□□□□□ -1.55
HOXA1P49639 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
HOXA1P49639 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
HOXA1P49639 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.55
HOXA1P49639 AC016907.2-203ENST00000455424 3563 ntTSL 3 BASIC5.4□□□□□ -1.55
HOXA1P49639 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.55
HOXA1P49639 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC5.4□□□□□ -1.55
HOXA1P49639 POT1-202ENST00000393329 3950 ntTSL 5 BASIC5.4□□□□□ -1.55
HOXA1P49639 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
HOXA1P49639 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC5.39□□□□□ -1.55
HOXA1P49639 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC5.39□□□□□ -1.55
HOXA1P49639 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
HOXA1P49639 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC5.39□□□□□ -1.55
HOXA1P49639 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.39□□□□□ -1.55
HOXA1P49639 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
HOXA1P49639 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC5.39□□□□□ -1.55
HOXA1P49639 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
HOXA1P49639 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC5.39□□□□□ -1.55
HOXA1P49639 AL512329.1-201ENST00000404600 1592 ntBASIC5.39□□□□□ -1.55
HOXA1P49639 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC5.39□□□□□ -1.55
HOXA1P49639 FHL5-203ENST00000541107 1904 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
HOXA1P49639 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
HOXA1P49639 GUCY1B2-204ENST00000531898 1979 ntBASIC5.39□□□□□ -1.55
HOXA1P49639 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
HOXA1P49639 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
HOXA1P49639 NOP10-201ENST00000328848 554 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
HOXA1P49639 RNA5SP301-201ENST00000362537 121 ntBASIC5.39□□□□□ -1.55
HOXA1P49639 RNU1-55P-201ENST00000365510 158 ntBASIC5.39□□□□□ -1.55
HOXA1P49639 RN7SKP1-201ENST00000365525 307 ntBASIC5.39□□□□□ -1.55
HOXA1P49639 HOPX-204ENST00000381260 1141 ntTSL 3 BASIC5.39□□□□□ -1.55
HOXA1P49639 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC5.39□□□□□ -1.55
HOXA1P49639 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
HOXA1P49639 NRIR-202ENST00000414795 506 ntTSL 3 BASIC5.39□□□□□ -1.55
HOXA1P49639 MIRLET7DHG-201ENST00000416309 1294 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
HOXA1P49639 AL139415.1-201ENST00000424862 352 ntBASIC5.39□□□□□ -1.55
HOXA1P49639 LINC00266-1-202ENST00000425473 629 ntTSL 5 BASIC5.39□□□□□ -1.55
HOXA1P49639 AC134879.1-201ENST00000426062 394 ntBASIC5.39□□□□□ -1.55
HOXA1P49639 AC092651.1-201ENST00000426110 312 ntBASIC5.39□□□□□ -1.55
HOXA1P49639 AL645936.2-201ENST00000430565 928 ntBASIC5.39□□□□□ -1.55
HOXA1P49639 VDAC2P3-201ENST00000430995 828 ntBASIC5.39□□□□□ -1.55
HOXA1P49639 NDUFA5P1-201ENST00000433858 341 ntBASIC5.39□□□□□ -1.55
HOXA1P49639 AL390879.1-201ENST00000439143 386 ntBASIC5.39□□□□□ -1.55
HOXA1P49639 RPL29P7-201ENST00000440227 457 ntBASIC5.39□□□□□ -1.55
HOXA1P49639 AL691517.1-201ENST00000440833 1235 ntBASIC5.39□□□□□ -1.55
HOXA1P49639 MIR4432HG-201ENST00000441598 470 ntTSL 3 BASIC5.39□□□□□ -1.55
HOXA1P49639 DBIL5P2-201ENST00000443827 253 ntBASIC5.39□□□□□ -1.55
HOXA1P49639 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC5.39□□□□□ -1.55
HOXA1P49639 MEF2AP1-201ENST00000454867 863 ntBASIC5.39□□□□□ -1.55
HOXA1P49639 AL391863.1-202ENST00000457427 612 ntTSL 5 BASIC5.39□□□□□ -1.55
HOXA1P49639 GAPDHP53-201ENST00000458397 924 ntBASIC5.39□□□□□ -1.55
HOXA1P49639 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
HOXA1P49639 CC2D2A-207ENST00000507954 548 ntAPPRIS ALT2 TSL 2 BASIC5.39□□□□□ -1.55
HOXA1P49639 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC5.39□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 87.7 ms