Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 C7orf69-201ENST00000418326 675 ntTSL 4 BASIC10.1□□□□□ -0.79
CUX1P39880 Z84478.1-201ENST00000438230 1219 ntBASIC10.1□□□□□ -0.79
CUX1P39880 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC10.1□□□□□ -0.79
CUX1P39880 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
CUX1P39880 RN7SL184P-201ENST00000488308 297 ntBASIC10.1□□□□□ -0.79
CUX1P39880 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC10.1□□□□□ -0.79
CUX1P39880 AC022182.1-202ENST00000529234 580 ntTSL 2 BASIC10.1□□□□□ -0.79
CUX1P39880 MIR1269B-201ENST00000580405 75 ntBASIC10.1□□□□□ -0.79
CUX1P39880 FAM27E4-201ENST00000605259 342 ntBASIC10.1□□□□□ -0.79
CUX1P39880 OR11H2-202ENST00000641517 1085 ntBASIC10.1□□□□□ -0.79
CUX1P39880 TSC1-208ENST00000545250 8310 ntTSL 5 BASIC10.1□□□□□ -0.79
CUX1P39880 TCL6-206ENST00000467865 3663 ntTSL 2 BASIC10.1□□□□□ -0.79
CUX1P39880 RBM12-203ENST00000374114 6662 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
CUX1P39880 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC10.1□□□□□ -0.79
CUX1P39880 MR1-204ENST00000367580 7704 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
CUX1P39880 ATF7IP2-203ENST00000396559 3641 ntTSL 2 BASIC10.1□□□□□ -0.79
CUX1P39880 YES1-205ENST00000584307 4639 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
CUX1P39880 VPS8-201ENST00000287546 5047 ntAPPRIS ALT1 TSL 1 (best) BASIC10.09□□□□□ -0.79
CUX1P39880 ZBED3-AS1-216ENST00000515356 1987 ntTSL 2 BASIC10.09□□□□□ -0.79
CUX1P39880 OFD1P17-201ENST00000437639 3018 ntBASIC10.09□□□□□ -0.79
CUX1P39880 OPCML-203ENST00000524381 6424 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
CUX1P39880 ENAH-209ENST00000635051 3308 ntAPPRIS ALT2 TSL 5 BASIC10.09□□□□□ -0.79
CUX1P39880 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC10.09□□□□□ -0.79
CUX1P39880 RBM23-203ENST00000359890 10040 ntAPPRIS P4 TSL 1 (best) BASIC10.09□□□□□ -0.79
CUX1P39880 RNA5SP183-201ENST00000362452 119 ntBASIC10.09□□□□□ -0.79
CUX1P39880 RNA5SP375-201ENST00000362975 119 ntBASIC10.09□□□□□ -0.79
CUX1P39880 RN7SKP29-201ENST00000410957 272 ntBASIC10.09□□□□□ -0.79
CUX1P39880 EEF1A1P29-201ENST00000416082 1096 ntBASIC10.09□□□□□ -0.79
CUX1P39880 AC007359.1-202ENST00000419158 2939 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
CUX1P39880 AL390119.1-201ENST00000440329 312 ntBASIC10.09□□□□□ -0.79
CUX1P39880 AC008175.1-201ENST00000446299 2939 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
CUX1P39880 AL358612.1-201ENST00000452911 481 ntTSL 3 BASIC10.09□□□□□ -0.79
CUX1P39880 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC10.09□□□□□ -0.79
CUX1P39880 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC10.09□□□□□ -0.79
CUX1P39880 AC110716.1-201ENST00000506934 607 ntTSL 2 BASIC10.09□□□□□ -0.79
CUX1P39880 COX6C-209ENST00000523016 745 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
CUX1P39880 OR7E158P-201ENST00000524483 910 ntBASIC10.09□□□□□ -0.79
CUX1P39880 OR5AP2-201ENST00000544374 1006 ntAPPRIS P1 BASIC10.09□□□□□ -0.79
CUX1P39880 AC044860.2-201ENST00000561005 179 ntBASIC10.09□□□□□ -0.79
CUX1P39880 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC10.09□□□□□ -0.79
CUX1P39880 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
CUX1P39880 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC10.09□□□□□ -0.79
CUX1P39880 AC024255.1-201ENST00000614376 102 ntBASIC10.09□□□□□ -0.79
CUX1P39880 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC10.09□□□□□ -0.79
CUX1P39880 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
CUX1P39880 AC118658.2-201ENST00000618697 459 ntBASIC10.09□□□□□ -0.79
CUX1P39880 MIR6730-201ENST00000622213 67 ntBASIC10.09□□□□□ -0.79
CUX1P39880 EZH1-201ENST00000415827 4608 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
CUX1P39880 ZNF426-201ENST00000253115 7085 ntAPPRIS P3 TSL 1 (best) BASIC10.09□□□□□ -0.79
CUX1P39880 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC10.09□□□□□ -0.79
CUX1P39880 ERCC4-201ENST00000311895 6758 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
CUX1P39880 HRH1-203ENST00000431010 4278 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
CUX1P39880 CNOT7-201ENST00000361272 6913 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
CUX1P39880 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
CUX1P39880 TP53BP1-203ENST00000382044 10384 ntAPPRIS ALT2 TSL 1 (best) BASIC10.09□□□□□ -0.79
CUX1P39880 PDCD6IP-201ENST00000307296 6161 ntAPPRIS P3 TSL 1 (best) BASIC10.09□□□□□ -0.79
CUX1P39880 CLASP1-202ENST00000397587 7915 ntTSL 5 BASIC10.09□□□□□ -0.79
CUX1P39880 PLCB1-202ENST00000378637 3864 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
CUX1P39880 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
CUX1P39880 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC10.09□□□□□ -0.79
CUX1P39880 ALG13-224ENST00000610588 4175 ntTSL 2 BASIC10.09□□□□□ -0.79
CUX1P39880 PLEKHA1-204ENST00000392799 3221 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
CUX1P39880 AL731556.1-201ENST00000394628 3711 ntBASIC10.08□□□□□ -0.8
CUX1P39880 RRP8-201ENST00000254605 6560 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
CUX1P39880 CASC19-205ENST00000641013 1411 ntBASIC10.08□□□□□ -0.8
CUX1P39880 OR10R3P-201ENST00000361688 942 ntBASIC10.08□□□□□ -0.8
CUX1P39880 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC10.08□□□□□ -0.8
CUX1P39880 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
CUX1P39880 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC10.08□□□□□ -0.8
CUX1P39880 RN7SKP59-201ENST00000410520 314 ntBASIC10.08□□□□□ -0.8
CUX1P39880 OR6E1P-201ENST00000414424 923 ntBASIC10.08□□□□□ -0.8
CUX1P39880 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC10.08□□□□□ -0.8
CUX1P39880 RYBP-201ENST00000477973 7215 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
CUX1P39880 RPS3AP15-201ENST00000483874 781 ntBASIC10.08□□□□□ -0.8
CUX1P39880 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC10.08□□□□□ -0.8
CUX1P39880 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC10.08□□□□□ -0.8
CUX1P39880 AL136295.6-201ENST00000610486 658 ntBASIC10.08□□□□□ -0.8
CUX1P39880 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC10.08□□□□□ -0.8
CUX1P39880 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC10.08□□□□□ -0.8
CUX1P39880 SELE-203ENST00000367775 3389 ntTSL 5 BASIC10.08□□□□□ -0.8
CUX1P39880 NEMP2-202ENST00000409150 6168 ntAPPRIS P1 TSL 2 BASIC10.08□□□□□ -0.8
CUX1P39880 AC117409.1-201ENST00000470499 1310 ntBASIC10.08□□□□□ -0.8
CUX1P39880 OR6J1-201ENST00000540461 4165 ntAPPRIS P1 BASIC10.08□□□□□ -0.8
CUX1P39880 PPP2R5C-205ENST00000445439 1526 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
CUX1P39880 HMGB1-203ENST00000341423 5485 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
CUX1P39880 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC10.08□□□□□ -0.8
CUX1P39880 DIO2-201ENST00000422005 6272 ntTSL 5 BASIC10.08□□□□□ -0.8
CUX1P39880 PNPLA4-204ENST00000537427 2559 ntTSL 2 BASIC10.08□□□□□ -0.8
CUX1P39880 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC10.08□□□□□ -0.8
CUX1P39880 SLC1A2-201ENST00000278379 11696 ntAPPRIS P3 TSL 1 (best) BASIC10.08□□□□□ -0.8
CUX1P39880 NRXN3-201ENST00000281127 8504 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
CUX1P39880 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CUX1P39880 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC10.07□□□□□ -0.8
CUX1P39880 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC10.07□□□□□ -0.8
CUX1P39880 RNU6-615P-201ENST00000516065 106 ntBASIC10.07□□□□□ -0.8
CUX1P39880 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC10.07□□□□□ -0.8
CUX1P39880 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC10.07□□□□□ -0.8
CUX1P39880 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC10.07□□□□□ -0.8
CUX1P39880 LINC02019-201ENST00000608605 2060 ntBASIC10.07□□□□□ -0.8
CUX1P39880 CCR9-201ENST00000355983 2653 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Retrieved 100 of 98,524 protein–RNA pairs in 67.4 ms