Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AL592494.3-201ENST00000609485 464 ntBASIC7.51□□□□□ -1.21
MSX1P28360 CGA-202ENST00000610310 615 ntTSL 3 BASIC7.51□□□□□ -1.21
MSX1P28360 TTC23L-208ENST00000610313 973 ntAPPRIS ALT2 TSL 1 (best) BASIC7.51□□□□□ -1.21
MSX1P28360 RN7SL82P-201ENST00000611435 237 ntBASIC7.51□□□□□ -1.21
MSX1P28360 AC135507.2-201ENST00000612443 309 ntBASIC7.51□□□□□ -1.21
MSX1P28360 RN7SL628P-201ENST00000619139 237 ntBASIC7.51□□□□□ -1.21
MSX1P28360 AC069209.1-201ENST00000619282 651 ntBASIC7.51□□□□□ -1.21
MSX1P28360 AC015871.5-202ENST00000623252 701 ntBASIC7.51□□□□□ -1.21
MSX1P28360 CU638689.4-205ENST00000623313 596 ntTSL 4 BASIC7.51□□□□□ -1.21
MSX1P28360 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC7.51□□□□□ -1.21
MSX1P28360 STRADA-246ENST00000640397 1045 ntTSL 5 BASIC7.51□□□□□ -1.21
MSX1P28360 SLC31A1-201ENST00000374212 4744 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
MSX1P28360 ZEB2-232ENST00000636026 5172 ntTSL 5 BASIC7.51□□□□□ -1.21
MSX1P28360 MAP3K13-203ENST00000424227 3156 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
MSX1P28360 SLC26A9-202ENST00000367134 4616 ntTSL 5 BASIC7.51□□□□□ -1.21
MSX1P28360 CAST-228ENST00000509903 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC7.51□□□□□ -1.21
MSX1P28360 HNRNPA1-204ENST00000547276 1539 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
MSX1P28360 ETV1-210ENST00000430479 6740 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
MSX1P28360 AL391666.1-201ENST00000442570 2764 ntBASIC7.51□□□□□ -1.21
MSX1P28360 PCBP1-AS1-243ENST00000458698 1893 ntTSL 3 BASIC7.51□□□□□ -1.21
MSX1P28360 NANOG-201ENST00000229307 5183 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
MSX1P28360 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC7.51□□□□□ -1.21
MSX1P28360 SHC4-203ENST00000537958 1447 ntTSL 2 BASIC7.51□□□□□ -1.21
MSX1P28360 GDNF-AS1-203ENST00000514532 2913 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
MSX1P28360 DCHS2-207ENST00000623607 8912 ntAPPRIS P2 TSL 1 (best) BASIC7.51□□□□□ -1.21
MSX1P28360 AL390726.6-201ENST00000637760 1654 ntTSL 5 BASIC7.51□□□□□ -1.21
MSX1P28360 AC106882.1-201ENST00000515789 2371 ntTSL 2 BASIC7.51□□□□□ -1.21
MSX1P28360 AMPD1-203ENST00000520113 2375 ntAPPRIS P3 TSL 1 (best) BASIC7.51□□□□□ -1.21
MSX1P28360 PIGK-201ENST00000359130 1926 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
MSX1P28360 PDLIM5-221ENST00000542407 2979 ntAPPRIS ALT1 TSL 1 (best) BASIC7.5□□□□□ -1.21
MSX1P28360 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC7.5□□□□□ -1.21
MSX1P28360 ZNF229-204ENST00000614049 4507 ntAPPRIS P3 TSL 1 (best) BASIC7.5□□□□□ -1.21
MSX1P28360 CREM-208ENST00000361599 2170 ntTSL 5 BASIC7.5□□□□□ -1.21
MSX1P28360 FOXM1-201ENST00000342628 3475 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
MSX1P28360 Z99129.3-201ENST00000624363 6430 ntTSL 2 BASIC7.5□□□□□ -1.21
MSX1P28360 Z99496.1-201ENST00000469424 1477 ntBASIC7.5□□□□□ -1.21
MSX1P28360 SLC3A1-204ENST00000409380 2424 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
MSX1P28360 R3HCC1L-203ENST00000370584 3372 ntAPPRIS P1 TSL 2 BASIC7.5□□□□□ -1.21
MSX1P28360 LIMD1-201ENST00000273317 11331 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
MSX1P28360 NLRP3-203ENST00000366496 3996 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
MSX1P28360 HELLS-206ENST00000394045 2699 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
MSX1P28360 MAPK10-329ENST00000641555 2656 ntBASIC7.5□□□□□ -1.21
MSX1P28360 GLYAT-202ENST00000344743 1735 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
MSX1P28360 OR52K3P-202ENST00000641797 1729 ntBASIC7.5□□□□□ -1.21
MSX1P28360 EEF1A1P11-201ENST00000415278 1389 ntBASIC7.5□□□□□ -1.21
MSX1P28360 TRIM59-208ENST00000543469 4615 ntTSL 5 BASIC7.5□□□□□ -1.21
MSX1P28360 FBXO36-201ENST00000283946 2810 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
MSX1P28360 MROH9-201ENST00000367758 2227 ntAPPRIS P3 TSL 1 (best) BASIC7.5□□□□□ -1.21
MSX1P28360 AL357055.3-201ENST00000421157 2459 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
MSX1P28360 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC7.5□□□□□ -1.21
MSX1P28360 RCBTB1-201ENST00000258646 3816 ntAPPRIS P1 TSL 2 BASIC7.5□□□□□ -1.21
MSX1P28360 TAAR8-201ENST00000275200 1029 ntAPPRIS P1 BASIC7.5□□□□□ -1.21
MSX1P28360 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
MSX1P28360 IMPA1-202ENST00000311489 1106 ntTSL 2 BASIC7.5□□□□□ -1.21
MSX1P28360 RN7SKP76-201ENST00000364419 323 ntBASIC7.5□□□□□ -1.21
MSX1P28360 Y_RNA.311-201ENST00000365068 96 ntBASIC7.5□□□□□ -1.21
MSX1P28360 MRPL55-211ENST00000366738 705 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
MSX1P28360 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC7.5□□□□□ -1.21
MSX1P28360 PROX1-AS1-201ENST00000413560 496 ntTSL 5 BASIC7.5□□□□□ -1.21
MSX1P28360 AC068481.1-201ENST00000415520 530 ntTSL 4 BASIC7.5□□□□□ -1.21
MSX1P28360 NENFP1-201ENST00000419476 466 ntBASIC7.5□□□□□ -1.21
MSX1P28360 AC008155.1-201ENST00000421078 329 ntBASIC7.5□□□□□ -1.21
MSX1P28360 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC7.5□□□□□ -1.21
MSX1P28360 TRIM43CP-201ENST00000422468 1028 ntBASIC7.5□□□□□ -1.21
MSX1P28360 AC104843.2-201ENST00000427666 297 ntBASIC7.5□□□□□ -1.21
MSX1P28360 AC012506.4-202ENST00000430051 572 ntTSL 5 BASIC7.5□□□□□ -1.21
MSX1P28360 ZYG11AP1-201ENST00000430329 837 ntBASIC7.5□□□□□ -1.21
MSX1P28360 OSTCP2-201ENST00000437956 444 ntBASIC7.5□□□□□ -1.21
MSX1P28360 AL450263.2-201ENST00000439400 589 ntBASIC7.5□□□□□ -1.21
MSX1P28360 MRPL22-202ENST00000439747 784 ntTSL 2 BASIC7.5□□□□□ -1.21
MSX1P28360 AL445686.1-201ENST00000443086 348 ntBASIC7.5□□□□□ -1.21
MSX1P28360 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC7.5□□□□□ -1.21
MSX1P28360 RBMY3AP-201ENST00000449381 1145 ntBASIC7.5□□□□□ -1.21
MSX1P28360 PROX1-AS1-203ENST00000451396 476 ntTSL 5 BASIC7.5□□□□□ -1.21
MSX1P28360 RPL23AP35-201ENST00000451906 501 ntBASIC7.5□□□□□ -1.21
MSX1P28360 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC7.5□□□□□ -1.21
MSX1P28360 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC7.5□□□□□ -1.21
MSX1P28360 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC7.5□□□□□ -1.21
MSX1P28360 NDUFB4P1-201ENST00000462398 381 ntBASIC7.5□□□□□ -1.21
MSX1P28360 BX890604.1-206ENST00000471090 922 ntTSL 3 BASIC7.5□□□□□ -1.21
MSX1P28360 RPL3P10-201ENST00000476002 1164 ntBASIC7.5□□□□□ -1.21
MSX1P28360 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC7.5□□□□□ -1.21
MSX1P28360 RPL7P42-201ENST00000481005 679 ntBASIC7.5□□□□□ -1.21
MSX1P28360 RPL41-202ENST00000501597 469 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
MSX1P28360 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC7.5□□□□□ -1.21
MSX1P28360 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC7.5□□□□□ -1.21
MSX1P28360 AC079598.4-201ENST00000549647 265 ntBASIC7.5□□□□□ -1.21
MSX1P28360 CR383656.6-201ENST00000550518 394 ntBASIC7.5□□□□□ -1.21
MSX1P28360 AC004241.1-203ENST00000552502 460 ntTSL 3 BASIC7.5□□□□□ -1.21
MSX1P28360 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC7.5□□□□□ -1.21
MSX1P28360 NPM1P5-201ENST00000557228 838 ntBASIC7.5□□□□□ -1.21
MSX1P28360 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC7.5□□□□□ -1.21
MSX1P28360 LINC01974-201ENST00000575126 494 ntTSL 3 BASIC7.5□□□□□ -1.21
MSX1P28360 AC093826.2-201ENST00000579042 108 ntBASIC7.5□□□□□ -1.21
MSX1P28360 LINC01483-205ENST00000591334 620 ntTSL 4 BASIC7.5□□□□□ -1.21
MSX1P28360 HIGD1B-205ENST00000591513 547 ntAPPRIS P1 TSL 2 BASIC7.5□□□□□ -1.21
MSX1P28360 LINC02532-210ENST00000606430 584 ntTSL 4 BASIC7.5□□□□□ -1.21
MSX1P28360 AC012511.1-201ENST00000608140 449 ntBASIC7.5□□□□□ -1.21
MSX1P28360 AC005962.2-201ENST00000611427 652 ntBASIC7.5□□□□□ -1.21
MSX1P28360 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC7.5□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms