Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 AC008040.1-202ENST00000483289 6251 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
LIG1P18858 AMY1B-202ENST00000370080 1787 ntAPPRIS P1 TSL 2 BASIC8.04□□□□□ -1.12
LIG1P18858 PPP4R3CP-201ENST00000412172 3131 ntAPPRIS P1 BASIC8.04□□□□□ -1.12
LIG1P18858 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
LIG1P18858 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
LIG1P18858 HSDL2-201ENST00000398803 2983 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
LIG1P18858 LINC01205-201ENST00000489670 1331 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
LIG1P18858 CYP4Z2P-202ENST00000505841 1436 ntTSL 2 BASIC8.03□□□□□ -1.12
LIG1P18858 UGT2B27P-201ENST00000505092 1620 ntBASIC8.03□□□□□ -1.12
LIG1P18858 AP005139.1-201ENST00000580702 1647 ntBASIC8.03□□□□□ -1.12
LIG1P18858 SELP-203ENST00000367788 2427 ntAPPRIS ALT2 TSL 5 BASIC8.03□□□□□ -1.12
LIG1P18858 TMEM68-219ENST00000617977 4512 ntTSL 5 BASIC8.03□□□□□ -1.12
LIG1P18858 RAB5B-201ENST00000360299 5340 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
LIG1P18858 OR5A2-201ENST00000302040 6318 ntAPPRIS P1 BASIC8.03□□□□□ -1.12
LIG1P18858 LRBA-209ENST00000510413 10032 ntAPPRIS ALT2 TSL 1 (best) BASIC8.03□□□□□ -1.12
LIG1P18858 ARHGAP29-201ENST00000260526 6087 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
LIG1P18858 IFT80-225ENST00000496589 3073 ntTSL 2 BASIC8.03□□□□□ -1.12
LIG1P18858 CEP97-206ENST00000494050 2870 ntAPPRIS ALT2 TSL 2 BASIC8.03□□□□□ -1.12
LIG1P18858 BPIFC-203ENST00000397452 2091 ntAPPRIS P1 TSL 5 BASIC8.03□□□□□ -1.12
LIG1P18858 SCOC-204ENST00000394205 1964 ntTSL 2 BASIC8.03□□□□□ -1.12
LIG1P18858 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC8.03□□□□□ -1.12
LIG1P18858 AC105114.1-201ENST00000624795 1862 ntBASIC8.03□□□□□ -1.12
LIG1P18858 MED31-201ENST00000225728 1654 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
LIG1P18858 CYP2G2P-201ENST00000594920 1485 ntBASIC8.03□□□□□ -1.12
LIG1P18858 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC8.03□□□□□ -1.12
LIG1P18858 ACACA-226ENST00000612895 9624 ntTSL 5 BASIC8.03□□□□□ -1.12
LIG1P18858 RNA5SP472-201ENST00000363868 119 ntBASIC8.03□□□□□ -1.12
LIG1P18858 FAM204BP-201ENST00000369171 701 ntBASIC8.03□□□□□ -1.12
LIG1P18858 NCR2-201ENST00000373083 1154 ntAPPRIS ALT2 TSL 1 (best) BASIC8.03□□□□□ -1.12
LIG1P18858 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
LIG1P18858 Y_RNA.436-201ENST00000384097 102 ntBASIC8.03□□□□□ -1.12
LIG1P18858 AF274855.1-201ENST00000411474 850 ntTSL 3 BASIC8.03□□□□□ -1.12
LIG1P18858 CD33-203ENST00000421133 1023 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
LIG1P18858 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC8.03□□□□□ -1.12
LIG1P18858 DUTP4-201ENST00000424782 475 ntBASIC8.03□□□□□ -1.12
LIG1P18858 AC092646.1-201ENST00000427142 901 ntBASIC8.03□□□□□ -1.12
LIG1P18858 LINC01522-201ENST00000428999 429 ntTSL 2 BASIC8.03□□□□□ -1.12
LIG1P18858 AL136987.1-201ENST00000434300 396 ntTSL 5 BASIC8.03□□□□□ -1.12
LIG1P18858 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC8.03□□□□□ -1.12
LIG1P18858 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC8.03□□□□□ -1.12
LIG1P18858 AL161626.1-201ENST00000441480 490 ntBASIC8.03□□□□□ -1.12
LIG1P18858 AL358794.1-201ENST00000445689 381 ntBASIC8.03□□□□□ -1.12
LIG1P18858 PARD3-AS1-201ENST00000446211 302 ntTSL 2 BASIC8.03□□□□□ -1.12
LIG1P18858 AC019080.2-201ENST00000453859 394 ntBASIC8.03□□□□□ -1.12
LIG1P18858 TPT1P1-201ENST00000458495 518 ntBASIC8.03□□□□□ -1.12
LIG1P18858 SNORA81.1-201ENST00000458922 177 ntBASIC8.03□□□□□ -1.12
LIG1P18858 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC8.03□□□□□ -1.12
LIG1P18858 AC021151.1-201ENST00000506933 183 ntTSL 3 BASIC8.03□□□□□ -1.12
LIG1P18858 AC117473.1-201ENST00000508616 392 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
LIG1P18858 ASNSP4-201ENST00000511103 447 ntBASIC8.03□□□□□ -1.12
LIG1P18858 RNU6-491P-201ENST00000516099 110 ntBASIC8.03□□□□□ -1.12
LIG1P18858 RNU6-889P-201ENST00000517189 103 ntBASIC8.03□□□□□ -1.12
LIG1P18858 AC016813.1-201ENST00000521511 735 ntTSL 3 BASIC8.03□□□□□ -1.12
LIG1P18858 COX6C-209ENST00000523016 745 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
LIG1P18858 OR4C1P-201ENST00000530880 937 ntBASIC8.03□□□□□ -1.12
LIG1P18858 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
LIG1P18858 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC8.03□□□□□ -1.12
LIG1P18858 NOP10-202ENST00000557912 436 ntTSL 2 BASIC8.03□□□□□ -1.12
LIG1P18858 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC8.03□□□□□ -1.12
LIG1P18858 PEX11A-205ENST00000561257 978 ntTSL 2 BASIC8.03□□□□□ -1.12
LIG1P18858 DYNLRB2-204ENST00000562982 492 ntTSL 3 BASIC8.03□□□□□ -1.12
LIG1P18858 AC105243.1-201ENST00000563172 1165 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
LIG1P18858 AP005136.1-201ENST00000579765 429 ntBASIC8.03□□□□□ -1.12
LIG1P18858 NBR2-204ENST00000587322 63 ntBASIC8.03□□□□□ -1.12
LIG1P18858 VN1R78P-201ENST00000597393 564 ntBASIC8.03□□□□□ -1.12
LIG1P18858 MAGEB5-201ENST00000602297 1216 ntAPPRIS P1 TSL 3 BASIC8.03□□□□□ -1.12
LIG1P18858 AC005070.2-201ENST00000604391 260 ntBASIC8.03□□□□□ -1.12
LIG1P18858 FXYD6P1-201ENST00000604857 285 ntBASIC8.03□□□□□ -1.12
LIG1P18858 AL133507.1-201ENST00000605269 557 ntBASIC8.03□□□□□ -1.12
LIG1P18858 AC018638.7-201ENST00000605836 1114 ntBASIC8.03□□□□□ -1.12
LIG1P18858 AL591686.2-201ENST00000608241 475 ntTSL 4 BASIC8.03□□□□□ -1.12
LIG1P18858 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC8.03□□□□□ -1.12
LIG1P18858 AL161931.1-201ENST00000612768 246 ntBASIC8.03□□□□□ -1.12
LIG1P18858 AC243919.1-201ENST00000613086 785 ntTSL 5 BASIC8.03□□□□□ -1.12
LIG1P18858 CXADRP3-202ENST00000617265 1100 ntBASIC8.03□□□□□ -1.12
LIG1P18858 AC103564.3-201ENST00000621194 220 ntBASIC8.03□□□□□ -1.12
LIG1P18858 AC245033.2-201ENST00000621893 421 ntTSL 3 BASIC8.03□□□□□ -1.12
LIG1P18858 AC004232.3-201ENST00000622977 525 ntBASIC8.03□□□□□ -1.12
LIG1P18858 PTPRT-209ENST00000612229 11285 ntTSL 5 BASIC8.03□□□□□ -1.12
LIG1P18858 NXF4-201ENST00000360035 3617 ntTSL 2 BASIC8.03□□□□□ -1.12
LIG1P18858 ARPP21-201ENST00000187397 3433 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
LIG1P18858 GRIP1-202ENST00000398016 4888 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
LIG1P18858 NEXMIF-203ENST00000616200 10624 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
LIG1P18858 LARP1B-203ENST00000432347 2707 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
LIG1P18858 C1orf27-202ENST00000367470 3754 ntTSL 5 BASIC8.03□□□□□ -1.12
LIG1P18858 RIOK2-202ENST00000508447 2149 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
LIG1P18858 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
LIG1P18858 OR11G2-203ENST00000641879 4415 ntAPPRIS P1 BASIC8.03□□□□□ -1.12
LIG1P18858 SLC25A12-202ENST00000422440 2979 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
LIG1P18858 ALS2CR12-207ENST00000439709 1626 ntAPPRIS ALT2 TSL 2 BASIC8.03□□□□□ -1.12
LIG1P18858 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
LIG1P18858 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC8.03□□□□□ -1.12
LIG1P18858 ZMAT1-206ENST00000540921 3139 ntAPPRIS P1 TSL 2 BASIC8.03□□□□□ -1.12
LIG1P18858 LINC00102-201ENST00000445785 1340 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
LIG1P18858 AC093010.2-202ENST00000493033 3023 ntTSL 2 BASIC8.03□□□□□ -1.12
LIG1P18858 PSD3-218ENST00000523619 8145 ntAPPRIS ALT2 TSL 1 (best) BASIC8.03□□□□□ -1.12
LIG1P18858 PDE1C-203ENST00000396184 8852 ntTSL 1 (best) BASIC8.02□□□□□ -1.12
LIG1P18858 LCOR-201ENST00000286067 4542 ntBASIC8.02□□□□□ -1.12
LIG1P18858 ZNF561-204ENST00000424629 4419 ntTSL 2 BASIC8.02□□□□□ -1.12
LIG1P18858 AC137056.2-201ENST00000624055 1958 ntBASIC8.02□□□□□ -1.12
Retrieved 100 of 98,524 protein–RNA pairs in 96.5 ms