Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 PPP2R5C-205ENST00000445439 1526 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
SHROOM4Q9ULL8 RBM23-203ENST00000359890 10040 ntAPPRIS P4 TSL 1 (best) BASIC11.91□□□□□ -0.5
SHROOM4Q9ULL8 ZBED3-AS1-216ENST00000515356 1987 ntTSL 2 BASIC11.91□□□□□ -0.5
SHROOM4Q9ULL8 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC11.91□□□□□ -0.5
SHROOM4Q9ULL8 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
SHROOM4Q9ULL8 GABRB2-209ENST00000612710 2470 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
SHROOM4Q9ULL8 ARPP21-201ENST00000187397 3433 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
SHROOM4Q9ULL8 FGD4-202ENST00000427716 8242 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
SHROOM4Q9ULL8 ARHGAP15-201ENST00000295095 1775 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
SHROOM4Q9ULL8 NRXN1-211ENST00000406859 2553 ntTSL 5 BASIC11.9□□□□□ -0.5
SHROOM4Q9ULL8 AL023284.3-201ENST00000407767 334 ntBASIC11.9□□□□□ -0.5
SHROOM4Q9ULL8 FIGN-202ENST00000409634 746 ntTSL 5 BASIC11.9□□□□□ -0.5
SHROOM4Q9ULL8 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC11.9□□□□□ -0.5
SHROOM4Q9ULL8 CASP5-203ENST00000418434 1023 ntTSL 5 BASIC11.9□□□□□ -0.5
SHROOM4Q9ULL8 CYCSP52-201ENST00000422857 310 ntBASIC11.9□□□□□ -0.5
SHROOM4Q9ULL8 TUBB4BP6-201ENST00000437576 479 ntBASIC11.9□□□□□ -0.5
SHROOM4Q9ULL8 CD109-203ENST00000437994 9401 ntAPPRIS ALT1 TSL 1 (best) BASIC11.9□□□□□ -0.5
SHROOM4Q9ULL8 H2AFZP6-201ENST00000444403 394 ntBASIC11.9□□□□□ -0.5
SHROOM4Q9ULL8 RN7SL326P-201ENST00000477493 296 ntBASIC11.9□□□□□ -0.5
SHROOM4Q9ULL8 RN7SL727P-201ENST00000482164 296 ntBASIC11.9□□□□□ -0.5
SHROOM4Q9ULL8 RPL32P9-201ENST00000487963 407 ntBASIC11.9□□□□□ -0.5
SHROOM4Q9ULL8 AC006499.3-201ENST00000506077 748 ntBASIC11.9□□□□□ -0.5
SHROOM4Q9ULL8 C5orf64-204ENST00000507461 535 ntTSL 4 BASIC11.9□□□□□ -0.5
SHROOM4Q9ULL8 TMEM68-213ENST00000522576 826 ntTSL 2 BASIC11.9□□□□□ -0.5
SHROOM4Q9ULL8 AC025871.2-201ENST00000522589 511 ntTSL 3 BASIC11.9□□□□□ -0.5
SHROOM4Q9ULL8 ANKS1B-207ENST00000546960 1383 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
SHROOM4Q9ULL8 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC11.9□□□□□ -0.5
SHROOM4Q9ULL8 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC11.9□□□□□ -0.5
SHROOM4Q9ULL8 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC11.9□□□□□ -0.5
SHROOM4Q9ULL8 AL133243.4-201ENST00000623116 3109 ntBASIC11.9□□□□□ -0.5
SHROOM4Q9ULL8 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
SHROOM4Q9ULL8 ZDBF2-201ENST00000374423 10286 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
SHROOM4Q9ULL8 FBXW7-203ENST00000296555 3572 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
SHROOM4Q9ULL8 AC011455.2-201ENST00000599320 3336 ntBASIC11.9□□□□□ -0.5
SHROOM4Q9ULL8 ENAH-209ENST00000635051 3308 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
SHROOM4Q9ULL8 CSDE1-201ENST00000261443 3228 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
SHROOM4Q9ULL8 TRPC4-210ENST00000625583 3009 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
SHROOM4Q9ULL8 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
SHROOM4Q9ULL8 CNTNAP4-209ENST00000622250 3783 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
SHROOM4Q9ULL8 LINC01931-201ENST00000295052 1832 ntTSL 2 BASIC11.9□□□□□ -0.5
SHROOM4Q9ULL8 DPYD-202ENST00000370192 4412 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
SHROOM4Q9ULL8 OFD1P10Y-201ENST00000434110 1433 ntBASIC11.9□□□□□ -0.51
SHROOM4Q9ULL8 VEPH1-205ENST00000468233 1401 ntTSL 1 (best) BASIC11.9□□□□□ -0.51
SHROOM4Q9ULL8 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
SHROOM4Q9ULL8 LINC00343-202ENST00000415294 1320 ntTSL 5 BASIC11.89□□□□□ -0.51
SHROOM4Q9ULL8 WFDC11-201ENST00000324384 614 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
SHROOM4Q9ULL8 AL391422.1-201ENST00000402155 436 ntBASIC11.89□□□□□ -0.51
SHROOM4Q9ULL8 C9orf147-201ENST00000412934 584 ntTSL 3 BASIC11.89□□□□□ -0.51
SHROOM4Q9ULL8 FTH1P10-202ENST00000430907 550 ntBASIC11.89□□□□□ -0.51
SHROOM4Q9ULL8 HIGD1AP16-201ENST00000450986 258 ntBASIC11.89□□□□□ -0.51
SHROOM4Q9ULL8 SLC25A14P1-201ENST00000502867 901 ntBASIC11.89□□□□□ -0.51
SHROOM4Q9ULL8 AC087664.2-202ENST00000521274 515 ntTSL 3 BASIC11.89□□□□□ -0.51
SHROOM4Q9ULL8 AP000662.1-201ENST00000530952 487 ntBASIC11.89□□□□□ -0.51
SHROOM4Q9ULL8 AC005703.3-201ENST00000579159 373 ntTSL 3 BASIC11.89□□□□□ -0.51
SHROOM4Q9ULL8 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC11.89□□□□□ -0.51
SHROOM4Q9ULL8 RN7SL787P-201ENST00000613000 284 ntBASIC11.89□□□□□ -0.51
SHROOM4Q9ULL8 VPS8-201ENST00000287546 5047 ntAPPRIS ALT1 TSL 1 (best) BASIC11.89□□□□□ -0.51
SHROOM4Q9ULL8 GABRR1-206ENST00000611484 3259 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
SHROOM4Q9ULL8 EZH1-202ENST00000428826 4623 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
SHROOM4Q9ULL8 DNA2-208ENST00000551118 3468 ntTSL 5 BASIC11.89□□□□□ -0.51
SHROOM4Q9ULL8 TMEM170B-201ENST00000379426 8362 ntAPPRIS P1 TSL 4 BASIC11.89□□□□□ -0.51
SHROOM4Q9ULL8 PROX1-201ENST00000261454 8170 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
SHROOM4Q9ULL8 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
SHROOM4Q9ULL8 TCF12-205ENST00000537840 1598 ntTSL 2 BASIC11.89□□□□□ -0.51
SHROOM4Q9ULL8 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
SHROOM4Q9ULL8 Z83820.1-201ENST00000456978 1499 ntBASIC11.89□□□□□ -0.51
SHROOM4Q9ULL8 DNA2-203ENST00000399180 3207 ntTSL 2 BASIC11.89□□□□□ -0.51
SHROOM4Q9ULL8 PSMA3-201ENST00000216455 970 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
SHROOM4Q9ULL8 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
SHROOM4Q9ULL8 OR8U1-201ENST00000302270 930 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
SHROOM4Q9ULL8 RNFT1P3-201ENST00000340898 1052 ntBASIC11.89□□□□□ -0.51
SHROOM4Q9ULL8 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC11.89□□□□□ -0.51
SHROOM4Q9ULL8 NANOGP4-201ENST00000427230 913 ntBASIC11.89□□□□□ -0.51
SHROOM4Q9ULL8 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC11.89□□□□□ -0.51
SHROOM4Q9ULL8 AC090150.1-201ENST00000521408 585 ntTSL 4 BASIC11.89□□□□□ -0.51
SHROOM4Q9ULL8 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
SHROOM4Q9ULL8 LINC02536-201ENST00000625799 625 ntTSL 3 BASIC11.89□□□□□ -0.51
SHROOM4Q9ULL8 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC11.89□□□□□ -0.51
SHROOM4Q9ULL8 ZNF329-203ENST00000597186 3930 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
SHROOM4Q9ULL8 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
SHROOM4Q9ULL8 GRAMD1B-207ENST00000529750 7723 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
SHROOM4Q9ULL8 AC079777.1-201ENST00000623836 1953 ntBASIC11.88□□□□□ -0.51
SHROOM4Q9ULL8 GRIA4-212ENST00000530497 5059 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
SHROOM4Q9ULL8 ELMO2-203ENST00000372176 3678 ntTSL 5 BASIC11.88□□□□□ -0.51
SHROOM4Q9ULL8 ZSWIM5P3-201ENST00000511265 2743 ntBASIC11.88□□□□□ -0.51
SHROOM4Q9ULL8 AC010328.1-201ENST00000596769 4060 ntTSL 2 BASIC11.88□□□□□ -0.51
SHROOM4Q9ULL8 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC11.88□□□□□ -0.51
SHROOM4Q9ULL8 AL035660.1-201ENST00000422041 222 ntBASIC11.88□□□□□ -0.51
SHROOM4Q9ULL8 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC11.88□□□□□ -0.51
SHROOM4Q9ULL8 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC11.88□□□□□ -0.51
SHROOM4Q9ULL8 GAPDHP75-201ENST00000433910 943 ntBASIC11.88□□□□□ -0.51
SHROOM4Q9ULL8 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
SHROOM4Q9ULL8 PTK2-207ENST00000517887 4661 ntTSL 5 BASIC11.88□□□□□ -0.51
SHROOM4Q9ULL8 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
SHROOM4Q9ULL8 AC091078.2-201ENST00000557145 559 ntBASIC11.88□□□□□ -0.51
SHROOM4Q9ULL8 STARD6-202ENST00000577499 696 ntTSL 2 BASIC11.88□□□□□ -0.51
SHROOM4Q9ULL8 AC006924.1-201ENST00000610750 559 ntBASIC11.88□□□□□ -0.51
SHROOM4Q9ULL8 AL391095.2-201ENST00000615228 378 ntTSL 3 BASIC11.88□□□□□ -0.51
SHROOM4Q9ULL8 AC118658.2-201ENST00000618697 459 ntBASIC11.88□□□□□ -0.51
SHROOM4Q9ULL8 LAMB4-201ENST00000205386 5857 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 330.3 ms