Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC133552.1-201ENST00000569988 4007 ntBASIC6.33□□□□□ -1.4
VMP1Q96GC9 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC6.33□□□□□ -1.4
VMP1Q96GC9 DEUP1-209ENST00000531792 1656 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
VMP1Q96GC9 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
VMP1Q96GC9 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC6.33□□□□□ -1.4
VMP1Q96GC9 FGFR2-205ENST00000357555 3690 ntTSL 2 BASIC6.32□□□□□ -1.4
VMP1Q96GC9 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
VMP1Q96GC9 AF121898.1-201ENST00000440763 1860 ntTSL 5 BASIC6.32□□□□□ -1.4
VMP1Q96GC9 C8orf34-AS1-201ENST00000512294 1600 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
VMP1Q96GC9 ECHDC1-210ENST00000454859 2341 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
VMP1Q96GC9 AC124017.1-201ENST00000508112 1594 ntTSL 5 BASIC6.32□□□□□ -1.4
VMP1Q96GC9 TCF12-205ENST00000537840 1598 ntTSL 2 BASIC6.32□□□□□ -1.4
VMP1Q96GC9 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC6.32□□□□□ -1.4
VMP1Q96GC9 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC6.32□□□□□ -1.4
VMP1Q96GC9 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
VMP1Q96GC9 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
VMP1Q96GC9 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
VMP1Q96GC9 AMY1A-201ENST00000370083 1790 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
VMP1Q96GC9 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
VMP1Q96GC9 MTCO1P15-201ENST00000529569 1526 ntBASIC6.32□□□□□ -1.4
VMP1Q96GC9 TMEM31-201ENST00000319560 728 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
VMP1Q96GC9 RNA5SP65-201ENST00000363166 119 ntBASIC6.32□□□□□ -1.4
VMP1Q96GC9 UBBP1-201ENST00000392399 473 ntBASIC6.32□□□□□ -1.4
VMP1Q96GC9 ARSFP1-201ENST00000398758 477 ntBASIC6.32□□□□□ -1.4
VMP1Q96GC9 AL353133.1-201ENST00000407695 401 ntBASIC6.32□□□□□ -1.4
VMP1Q96GC9 MIR1266-201ENST00000408125 84 ntBASIC6.32□□□□□ -1.4
VMP1Q96GC9 SEPT7P8-201ENST00000413308 775 ntBASIC6.32□□□□□ -1.4
VMP1Q96GC9 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC6.32□□□□□ -1.4
VMP1Q96GC9 AC007966.1-201ENST00000421998 1179 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
VMP1Q96GC9 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC6.32□□□□□ -1.4
VMP1Q96GC9 E2F6P3-201ENST00000441743 743 ntBASIC6.32□□□□□ -1.4
VMP1Q96GC9 SNRPBP1-201ENST00000443634 282 ntBASIC6.32□□□□□ -1.4
VMP1Q96GC9 GAPDHP20-201ENST00000444107 1007 ntBASIC6.32□□□□□ -1.4
VMP1Q96GC9 WDR82P2-201ENST00000444540 928 ntBASIC6.32□□□□□ -1.4
VMP1Q96GC9 CCDC13-AS1-202ENST00000446950 554 ntTSL 4 BASIC6.32□□□□□ -1.4
VMP1Q96GC9 AC026391.1-201ENST00000450677 537 ntTSL 3 BASIC6.32□□□□□ -1.4
VMP1Q96GC9 MTERF4-220ENST00000495694 909 ntTSL 5 BASIC6.32□□□□□ -1.4
VMP1Q96GC9 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC6.32□□□□□ -1.4
VMP1Q96GC9 AC009567.2-201ENST00000502989 349 ntBASIC6.32□□□□□ -1.4
VMP1Q96GC9 AC106800.3-201ENST00000511389 308 ntBASIC6.32□□□□□ -1.4
VMP1Q96GC9 AP002981.1-201ENST00000517692 975 ntBASIC6.32□□□□□ -1.4
VMP1Q96GC9 ZNF706-212ENST00000520984 782 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
VMP1Q96GC9 LINC02237-201ENST00000521753 805 ntTSL 3 BASIC6.32□□□□□ -1.4
VMP1Q96GC9 AP001804.1-201ENST00000526868 919 ntBASIC6.32□□□□□ -1.4
VMP1Q96GC9 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC6.32□□□□□ -1.4
VMP1Q96GC9 C14orf119-202ENST00000554203 725 ntAPPRIS P1 TSL 2 BASIC6.32□□□□□ -1.4
VMP1Q96GC9 LINC02207-201ENST00000554530 1256 ntTSL 5 BASIC6.32□□□□□ -1.4
VMP1Q96GC9 CNIH1-205ENST00000556113 523 ntAPPRIS ALT1 TSL 2 BASIC6.32□□□□□ -1.4
VMP1Q96GC9 AC011270.1-201ENST00000558606 583 ntBASIC6.32□□□□□ -1.4
VMP1Q96GC9 AC026770.1-201ENST00000558994 581 ntTSL 4 BASIC6.32□□□□□ -1.4
VMP1Q96GC9 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC6.32□□□□□ -1.4
VMP1Q96GC9 AC006305.3-201ENST00000590589 454 ntTSL 2 BASIC6.32□□□□□ -1.4
VMP1Q96GC9 AC009237.12-201ENST00000604755 742 ntBASIC6.32□□□□□ -1.4
VMP1Q96GC9 AL356608.1-201ENST00000610034 820 ntBASIC6.32□□□□□ -1.4
VMP1Q96GC9 AL513478.2-201ENST00000610400 988 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
VMP1Q96GC9 AC025287.2-201ENST00000621911 668 ntBASIC6.32□□□□□ -1.4
VMP1Q96GC9 AC025262.3-201ENST00000623666 360 ntBASIC6.32□□□□□ -1.4
VMP1Q96GC9 AC084816.1-210ENST00000540895 1920 ntTSL 2 BASIC6.32□□□□□ -1.4
VMP1Q96GC9 SLC22A25-201ENST00000306494 1692 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
VMP1Q96GC9 AC062022.1-201ENST00000451026 1684 ntBASIC6.32□□□□□ -1.4
VMP1Q96GC9 AP2B1-211ENST00000610402 3204 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
VMP1Q96GC9 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
VMP1Q96GC9 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
VMP1Q96GC9 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
VMP1Q96GC9 TEK-201ENST00000380036 4760 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
VMP1Q96GC9 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC6.31□□□□□ -1.4
VMP1Q96GC9 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
VMP1Q96GC9 TATDN2P3-201ENST00000452855 3665 ntBASIC6.31□□□□□ -1.4
VMP1Q96GC9 AC006511.3-201ENST00000624929 1783 ntBASIC6.31□□□□□ -1.4
VMP1Q96GC9 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
VMP1Q96GC9 HSPD1P7-201ENST00000447985 1686 ntBASIC6.31□□□□□ -1.4
VMP1Q96GC9 MAP3K19-206ENST00000392918 1460 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
VMP1Q96GC9 LACRT-201ENST00000257867 551 ntAPPRIS P2 TSL 1 (best) BASIC6.31□□□□□ -1.4
VMP1Q96GC9 RNU6-249P-201ENST00000363016 102 ntBASIC6.31□□□□□ -1.4
VMP1Q96GC9 XAGE3-202ENST00000375491 489 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
VMP1Q96GC9 AC019178.1-201ENST00000392337 440 ntBASIC6.31□□□□□ -1.4
VMP1Q96GC9 AL359922.1-201ENST00000404796 935 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
VMP1Q96GC9 ZNF385D-AS1-201ENST00000412369 705 ntTSL 3 BASIC6.31□□□□□ -1.4
VMP1Q96GC9 AL663061.1-201ENST00000416625 580 ntBASIC6.31□□□□□ -1.4
VMP1Q96GC9 SPATA20P1-201ENST00000423089 438 ntBASIC6.31□□□□□ -1.4
VMP1Q96GC9 TRGC2-201ENST00000436911 1013 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
VMP1Q96GC9 UBQLN1P1-207ENST00000441056 1169 ntBASIC6.31□□□□□ -1.4
VMP1Q96GC9 AC004470.1-201ENST00000442155 382 ntTSL 5 BASIC6.31□□□□□ -1.4
VMP1Q96GC9 DNAJC19P5-201ENST00000443295 316 ntBASIC6.31□□□□□ -1.4
VMP1Q96GC9 RPL23AP28-201ENST00000448062 470 ntBASIC6.31□□□□□ -1.4
VMP1Q96GC9 LINC00349-201ENST00000448748 841 ntTSL 5 BASIC6.31□□□□□ -1.4
VMP1Q96GC9 AL117382.2-201ENST00000455642 403 ntTSL 3 BASIC6.31□□□□□ -1.4
VMP1Q96GC9 LINC01780-202ENST00000457683 391 ntTSL 3 BASIC6.31□□□□□ -1.4
VMP1Q96GC9 AC129807.1-201ENST00000471614 591 ntTSL 4 BASIC6.31□□□□□ -1.4
VMP1Q96GC9 RN7SL502P-201ENST00000481857 290 ntBASIC6.31□□□□□ -1.4
VMP1Q96GC9 MORF4L2P1-201ENST00000503761 858 ntBASIC6.31□□□□□ -1.4
VMP1Q96GC9 NREP-217ENST00000509025 987 ntTSL 3 BASIC6.31□□□□□ -1.4
VMP1Q96GC9 NREP-223ENST00000515855 801 ntTSL 4 BASIC6.31□□□□□ -1.4
VMP1Q96GC9 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC6.31□□□□□ -1.4
VMP1Q96GC9 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC6.31□□□□□ -1.4
VMP1Q96GC9 AP000859.1-201ENST00000525536 307 ntBASIC6.31□□□□□ -1.4
VMP1Q96GC9 AC006065.4-204ENST00000537478 654 ntTSL 2 BASIC6.31□□□□□ -1.4
VMP1Q96GC9 AC006065.4-203ENST00000541065 526 ntTSL 2 BASIC6.31□□□□□ -1.4
VMP1Q96GC9 AC140063.1-201ENST00000541343 259 ntBASIC6.31□□□□□ -1.4
VMP1Q96GC9 AC022509.1-203ENST00000541940 708 ntTSL 4 BASIC6.31□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms