Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC4.84□□□□□ -1.64
VPS13CQ709C8 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC4.84□□□□□ -1.64
VPS13CQ709C8 AL118522.2-201ENST00000616045 615 ntBASIC4.84□□□□□ -1.64
VPS13CQ709C8 HOTTIP_3.1-201ENST00000619957 337 ntBASIC4.84□□□□□ -1.64
VPS13CQ709C8 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC4.84□□□□□ -1.64
VPS13CQ709C8 NEXMIF-201ENST00000055682 11719 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
VPS13CQ709C8 SETDB1-201ENST00000271640 4437 ntAPPRIS ALT1 TSL 1 (best) BASIC4.84□□□□□ -1.64
VPS13CQ709C8 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.84□□□□□ -1.64
VPS13CQ709C8 PPP2R2B-202ENST00000394409 10704 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
VPS13CQ709C8 LTBP1-202ENST00000404525 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
VPS13CQ709C8 NBAS-201ENST00000281513 7281 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
VPS13CQ709C8 TMEM236-201ENST00000377495 5464 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
VPS13CQ709C8 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
VPS13CQ709C8 AP002364.1-201ENST00000623330 3386 ntBASIC4.83□□□□□ -1.64
VPS13CQ709C8 GCN1-201ENST00000300648 8675 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
VPS13CQ709C8 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
VPS13CQ709C8 ABL2-204ENST00000502732 12144 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
VPS13CQ709C8 ZMYND8-217ENST00000536340 5273 ntAPPRIS ALT2 TSL 2 BASIC4.83□□□□□ -1.64
VPS13CQ709C8 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
VPS13CQ709C8 RNA5SP30-201ENST00000365552 115 ntBASIC4.83□□□□□ -1.64
VPS13CQ709C8 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC4.83□□□□□ -1.64
VPS13CQ709C8 AC022215.1-201ENST00000481770 362 ntBASIC4.83□□□□□ -1.64
VPS13CQ709C8 SSX8-201ENST00000506270 579 ntBASIC4.83□□□□□ -1.64
VPS13CQ709C8 RN7SKP66-201ENST00000516681 231 ntBASIC4.83□□□□□ -1.64
VPS13CQ709C8 ANKRD20A5P-203ENST00000580200 566 ntTSL 5 BASIC4.83□□□□□ -1.64
VPS13CQ709C8 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC4.83□□□□□ -1.64
VPS13CQ709C8 AC100827.5-201ENST00000615883 426 ntBASIC4.83□□□□□ -1.64
VPS13CQ709C8 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
VPS13CQ709C8 AC005618.1-201ENST00000606901 3148 ntBASIC4.83□□□□□ -1.64
VPS13CQ709C8 SEC16A-203ENST00000313050 8806 ntAPPRIS P3 TSL 2 BASIC4.83□□□□□ -1.64
VPS13CQ709C8 SLC38A2-201ENST00000256689 4888 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
VPS13CQ709C8 FAM19A2-211ENST00000550003 2499 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
VPS13CQ709C8 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC4.83□□□□□ -1.64
VPS13CQ709C8 NFIA-201ENST00000357977 3200 ntTSL 2 BASIC4.83□□□□□ -1.64
VPS13CQ709C8 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC4.83□□□□□ -1.64
VPS13CQ709C8 AF131215.2-201ENST00000531549 1710 ntBASIC4.83□□□□□ -1.64
VPS13CQ709C8 AC016583.1-201ENST00000624221 2431 ntBASIC4.83□□□□□ -1.64
VPS13CQ709C8 SORBS1-211ENST00000371247 7354 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
VPS13CQ709C8 AC023154.1-201ENST00000510351 2517 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
VPS13CQ709C8 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC4.83□□□□□ -1.64
VPS13CQ709C8 RNU11-6P-201ENST00000391127 133 ntBASIC4.83□□□□□ -1.64
VPS13CQ709C8 DUTP5-201ENST00000406790 469 ntBASIC4.83□□□□□ -1.64
VPS13CQ709C8 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC4.83□□□□□ -1.64
VPS13CQ709C8 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC4.83□□□□□ -1.64
VPS13CQ709C8 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC4.83□□□□□ -1.64
VPS13CQ709C8 AC022726.2-201ENST00000634673 547 ntBASIC4.83□□□□□ -1.64
VPS13CQ709C8 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
VPS13CQ709C8 BTBD3-214ENST00000618296 4582 ntAPPRIS ALT1 TSL 1 (best) BASIC4.83□□□□□ -1.64
VPS13CQ709C8 NOTCH2-201ENST00000256646 11389 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
VPS13CQ709C8 SPTAN1-203ENST00000372739 7868 ntAPPRIS ALT1 TSL 1 (best) BASIC4.83□□□□□ -1.64
VPS13CQ709C8 TRIM6-205ENST00000445329 2951 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
VPS13CQ709C8 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
VPS13CQ709C8 CRP-204ENST00000368112 787 ntTSL 2 BASIC4.83□□□□□ -1.64
VPS13CQ709C8 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
VPS13CQ709C8 AL023284.3-201ENST00000407767 334 ntBASIC4.83□□□□□ -1.64
VPS13CQ709C8 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC4.83□□□□□ -1.64
VPS13CQ709C8 RN7SL97P-201ENST00000486780 299 ntBASIC4.83□□□□□ -1.64
VPS13CQ709C8 BTF3P13-201ENST00000513224 490 ntBASIC4.83□□□□□ -1.64
VPS13CQ709C8 NSD2-205ENST00000382892 7706 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
VPS13CQ709C8 SPATA13-202ENST00000382095 6665 ntAPPRIS P3 TSL 2 BASIC4.83□□□□□ -1.64
VPS13CQ709C8 MTF2-214ENST00000545708 4046 ntTSL 2 BASIC4.83□□□□□ -1.64
VPS13CQ709C8 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
VPS13CQ709C8 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC4.83□□□□□ -1.64
VPS13CQ709C8 SLFN14-201ENST00000415846 2889 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
VPS13CQ709C8 AC125793.1-201ENST00000565238 1493 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
VPS13CQ709C8 TMEM178B-202ENST00000565468 10558 ntAPPRIS P2 TSL 5 BASIC4.83□□□□□ -1.64
VPS13CQ709C8 TMEM178B-203ENST00000610315 10552 ntAPPRIS ALT1 TSL 5 BASIC4.83□□□□□ -1.64
VPS13CQ709C8 HCAR1-201ENST00000432564 4768 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
VPS13CQ709C8 SNHG14-210ENST00000546682 8842 ntTSL 5 BASIC4.83□□□□□ -1.64
VPS13CQ709C8 PLD5-208ENST00000536534 8721 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
VPS13CQ709C8 NLRC5-201ENST00000262510 6822 ntAPPRIS P3 TSL 5 BASIC4.82□□□□□ -1.64
VPS13CQ709C8 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
VPS13CQ709C8 LAMA4-205ENST00000389463 6297 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
VPS13CQ709C8 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
VPS13CQ709C8 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC4.82□□□□□ -1.64
VPS13CQ709C8 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
VPS13CQ709C8 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
VPS13CQ709C8 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
VPS13CQ709C8 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC4.82□□□□□ -1.64
VPS13CQ709C8 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC4.82□□□□□ -1.64
VPS13CQ709C8 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC4.82□□□□□ -1.64
VPS13CQ709C8 MYH11-203ENST00000452625 6886 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
VPS13CQ709C8 PTPRG-AS1-204ENST00000474795 2661 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
VPS13CQ709C8 HNRNPCP1-201ENST00000556181 766 ntBASIC4.82□□□□□ -1.64
VPS13CQ709C8 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC4.82□□□□□ -1.64
VPS13CQ709C8 AL049840.6-201ENST00000604583 345 ntBASIC4.82□□□□□ -1.64
VPS13CQ709C8 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
VPS13CQ709C8 IGSF1-206ENST00000370910 4406 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
VPS13CQ709C8 RBM12B-201ENST00000399300 7269 ntAPPRIS P2 TSL 2 BASIC4.82□□□□□ -1.64
VPS13CQ709C8 CABIN1-201ENST00000263119 7222 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
VPS13CQ709C8 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC4.82□□□□□ -1.64
VPS13CQ709C8 KLF18-201ENST00000634670 3159 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
VPS13CQ709C8 INPP5F-208ENST00000637174 3168 ntTSL 5 BASIC4.82□□□□□ -1.64
VPS13CQ709C8 PREPL-203ENST00000378520 2308 ntTSL 5 BASIC4.82□□□□□ -1.64
VPS13CQ709C8 IMMTP1-201ENST00000435590 2219 ntBASIC4.82□□□□□ -1.64
VPS13CQ709C8 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
VPS13CQ709C8 BRD7-202ENST00000394689 2145 ntAPPRIS ALT1 TSL 1 (best) BASIC4.82□□□□□ -1.64
VPS13CQ709C8 AOX3P-204ENST00000491025 2107 ntBASIC4.82□□□□□ -1.64
VPS13CQ709C8 FRMPD3-201ENST00000276185 7304 ntAPPRIS P2 TSL 5 BASIC4.82□□□□□ -1.64
VPS13CQ709C8 FTO-215ENST00000636491 1676 ntTSL 5 BASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 178.3 ms