Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AL591379.2-201ENST00000450223 397 ntBASIC7.57□□□□□ -1.2
LIG3P49916 OTX2P1-201ENST00000450956 354 ntBASIC7.57□□□□□ -1.2
LIG3P49916 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC7.57□□□□□ -1.2
LIG3P49916 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC7.57□□□□□ -1.2
LIG3P49916 AL357143.1-201ENST00000457239 934 ntTSL 5 BASIC7.57□□□□□ -1.2
LIG3P49916 AC018475.1-201ENST00000478358 465 ntBASIC7.57□□□□□ -1.2
LIG3P49916 AC079944.1-201ENST00000485426 495 ntBASIC7.57□□□□□ -1.2
LIG3P49916 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC7.57□□□□□ -1.2
LIG3P49916 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC7.57□□□□□ -1.2
LIG3P49916 AC006487.2-201ENST00000503624 577 ntTSL 4 BASIC7.57□□□□□ -1.2
LIG3P49916 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
LIG3P49916 AC021088.1-201ENST00000506519 805 ntTSL 3 BASIC7.57□□□□□ -1.2
LIG3P49916 C4orf19-203ENST00000508175 828 ntTSL 3 BASIC7.57□□□□□ -1.2
LIG3P49916 AC233724.10-201ENST00000510454 409 ntBASIC7.57□□□□□ -1.2
LIG3P49916 AC095059.2-201ENST00000510601 933 ntBASIC7.57□□□□□ -1.2
LIG3P49916 BTG1P1-201ENST00000540396 508 ntBASIC7.57□□□□□ -1.2
LIG3P49916 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
LIG3P49916 CNIH1-205ENST00000556113 523 ntAPPRIS ALT1 TSL 2 BASIC7.57□□□□□ -1.2
LIG3P49916 DRAIC-206ENST00000559029 309 ntTSL 3 BASIC7.57□□□□□ -1.2
LIG3P49916 AC044860.3-201ENST00000559957 368 ntBASIC7.57□□□□□ -1.2
LIG3P49916 TRIM69-210ENST00000561043 1017 ntTSL 3 BASIC7.57□□□□□ -1.2
LIG3P49916 MT1B-202ENST00000562399 351 ntTSL 3 BASIC7.57□□□□□ -1.2
LIG3P49916 GARSP1-201ENST00000570895 719 ntBASIC7.57□□□□□ -1.2
LIG3P49916 ARL17A-205ENST00000573185 581 ntAPPRIS ALT2 TSL 3 BASIC7.57□□□□□ -1.2
LIG3P49916 ARL17B-206ENST00000575698 581 ntTSL 3 BASIC7.57□□□□□ -1.2
LIG3P49916 AC091178.1-204ENST00000577328 366 ntTSL 4 BASIC7.57□□□□□ -1.2
LIG3P49916 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC7.57□□□□□ -1.2
LIG3P49916 AC011468.3-201ENST00000597886 332 ntTSL 3 BASIC7.57□□□□□ -1.2
LIG3P49916 AC011462.3-201ENST00000598988 540 ntTSL 3 BASIC7.57□□□□□ -1.2
LIG3P49916 AC005518.2-201ENST00000603254 282 ntBASIC7.57□□□□□ -1.2
LIG3P49916 AC008385.1-201ENST00000604421 355 ntBASIC7.57□□□□□ -1.2
LIG3P49916 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC7.57□□□□□ -1.2
LIG3P49916 AC010245.2-201ENST00000606908 1167 ntBASIC7.57□□□□□ -1.2
LIG3P49916 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC7.57□□□□□ -1.2
LIG3P49916 MIR6731-201ENST00000614863 72 ntBASIC7.57□□□□□ -1.2
LIG3P49916 LINC00923-204ENST00000614972 1181 ntTSL 5 BASIC7.57□□□□□ -1.2
LIG3P49916 CCL15-204ENST00000617897 1073 ntAPPRIS P2 TSL 1 (best) BASIC7.57□□□□□ -1.2
LIG3P49916 OR10R2-203ENST00000641400 975 ntAPPRIS ALT2 BASIC7.57□□□□□ -1.2
LIG3P49916 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC7.57□□□□□ -1.2
LIG3P49916 KYNUP1-201ENST00000466683 1406 ntBASIC7.57□□□□□ -1.2
LIG3P49916 GABRA6-207ENST00000523217 2393 ntTSL 5 BASIC7.57□□□□□ -1.2
LIG3P49916 UTP14C-201ENST00000521776 5529 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
LIG3P49916 AC034229.2-201ENST00000566945 2508 ntBASIC7.57□□□□□ -1.2
LIG3P49916 GPR1-203ENST00000437420 1557 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
LIG3P49916 FKBP5-202ENST00000536438 3940 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
LIG3P49916 TMEM138-209ENST00000542946 2839 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
LIG3P49916 CLUL1-201ENST00000338387 1897 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
LIG3P49916 TDP1-213ENST00000555880 1894 ntTSL 5 BASIC7.57□□□□□ -1.2
LIG3P49916 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC7.57□□□□□ -1.2
LIG3P49916 AC087045.3-201ENST00000623046 2468 ntBASIC7.57□□□□□ -1.2
LIG3P49916 LINC-ROR-201ENST00000553704 2603 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
LIG3P49916 MTND4P4-201ENST00000439033 1366 ntBASIC7.57□□□□□ -1.2
LIG3P49916 PDE11A-203ENST00000409504 2102 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
LIG3P49916 NOX1-202ENST00000372960 2418 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
LIG3P49916 NCOR1-204ENST00000395851 7950 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
LIG3P49916 ZNF426-202ENST00000535489 2375 ntAPPRIS P3 TSL 1 (best) BASIC7.56□□□□□ -1.2
LIG3P49916 S100Z-201ENST00000317593 1468 ntAPPRIS P1 TSL 3 BASIC7.56□□□□□ -1.2
LIG3P49916 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
LIG3P49916 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC7.56□□□□□ -1.2
LIG3P49916 CR382285.2-201ENST00000624662 1495 ntBASIC7.56□□□□□ -1.2
LIG3P49916 DDX50P1-201ENST00000438163 2400 ntBASIC7.56□□□□□ -1.2
LIG3P49916 AL356317.1-201ENST00000396110 1436 ntBASIC7.56□□□□□ -1.2
LIG3P49916 HDAC1P1-201ENST00000455482 1445 ntBASIC7.56□□□□□ -1.2
LIG3P49916 TRIM60P14-201ENST00000513444 1419 ntBASIC7.56□□□□□ -1.2
LIG3P49916 RERGL-201ENST00000229002 1147 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
LIG3P49916 IL17F-201ENST00000336123 850 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
LIG3P49916 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
LIG3P49916 Y_RNA.201-201ENST00000364052 96 ntBASIC7.56□□□□□ -1.2
LIG3P49916 OR13C3-201ENST00000374781 1108 ntBASIC7.56□□□□□ -1.2
LIG3P49916 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC7.56□□□□□ -1.2
LIG3P49916 SNORD116-4-201ENST00000384733 96 ntBASIC7.56□□□□□ -1.2
LIG3P49916 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC7.56□□□□□ -1.2
LIG3P49916 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC7.56□□□□□ -1.2
LIG3P49916 BTF3P9-201ENST00000418784 283 ntBASIC7.56□□□□□ -1.2
LIG3P49916 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC7.56□□□□□ -1.2
LIG3P49916 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
LIG3P49916 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC7.56□□□□□ -1.2
LIG3P49916 VN1R35P-201ENST00000428102 693 ntBASIC7.56□□□□□ -1.2
LIG3P49916 AC097468.2-201ENST00000429343 553 ntTSL 4 BASIC7.56□□□□□ -1.2
LIG3P49916 AC105393.2-201ENST00000431911 549 ntTSL 4 BASIC7.56□□□□□ -1.2
LIG3P49916 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC7.56□□□□□ -1.2
LIG3P49916 AL354983.1-201ENST00000434580 906 ntBASIC7.56□□□□□ -1.2
LIG3P49916 PTGES3P1-201ENST00000439531 483 ntBASIC7.56□□□□□ -1.2
LIG3P49916 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC7.56□□□□□ -1.2
LIG3P49916 AL121885.2-201ENST00000440255 819 ntTSL 3 BASIC7.56□□□□□ -1.2
LIG3P49916 NEURL1-AS1-201ENST00000447820 439 ntTSL 2 BASIC7.56□□□□□ -1.2
LIG3P49916 TRY2P-201ENST00000448860 689 ntBASIC7.56□□□□□ -1.2
LIG3P49916 MYO5BP2-201ENST00000449815 1277 ntBASIC7.56□□□□□ -1.2
LIG3P49916 CCNB1IP1P3-201ENST00000454702 829 ntBASIC7.56□□□□□ -1.2
LIG3P49916 AC013429.1-201ENST00000456604 422 ntBASIC7.56□□□□□ -1.2
LIG3P49916 VN1R6P-201ENST00000458417 907 ntBASIC7.56□□□□□ -1.2
LIG3P49916 AC013787.1-201ENST00000460165 307 ntBASIC7.56□□□□□ -1.2
LIG3P49916 RPSAP39-201ENST00000467439 883 ntBASIC7.56□□□□□ -1.2
LIG3P49916 SYNPR-208ENST00000472899 527 ntTSL 4 BASIC7.56□□□□□ -1.2
LIG3P49916 AC004815.1-201ENST00000484185 331 ntBASIC7.56□□□□□ -1.2
LIG3P49916 AC008770.1-202ENST00000495324 516 ntTSL 2 BASIC7.56□□□□□ -1.2
LIG3P49916 RN7SL182P-201ENST00000496499 300 ntBASIC7.56□□□□□ -1.2
LIG3P49916 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC7.56□□□□□ -1.2
LIG3P49916 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
LIG3P49916 AC021146.7-201ENST00000509604 775 ntBASIC7.56□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 63.8 ms