Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC040977.1-201ENST00000573222 343 ntTSL 3 BASIC6.11□□□□□ -1.43
COL6A3P12111 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
COL6A3P12111 ZBTB11-201ENST00000312938 6020 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL6A3P12111 AOAH-210ENST00000617267 2398 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL6A3P12111 LINC02044-201ENST00000490139 2502 ntTSL 2 BASIC6.11□□□□□ -1.43
COL6A3P12111 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL6A3P12111 OSBPL9-205ENST00000447887 2940 ntTSL 2 BASIC6.11□□□□□ -1.43
COL6A3P12111 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL6A3P12111 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC6.11□□□□□ -1.43
COL6A3P12111 GPBP1-208ENST00000514387 3310 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL6A3P12111 AC011592.1-201ENST00000624647 3634 ntBASIC6.11□□□□□ -1.43
COL6A3P12111 FCHSD2-203ENST00000409314 4509 ntTSL 5 BASIC6.11□□□□□ -1.43
COL6A3P12111 UBXN10-201ENST00000375099 5571 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL6A3P12111 WDR48-201ENST00000302313 3707 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL6A3P12111 MYO7B-203ENST00000428314 6715 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
COL6A3P12111 POGZ-203ENST00000368863 6054 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL6A3P12111 SEPSECS-202ENST00000382103 5496 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL6A3P12111 ACAN-206ENST00000559004 7628 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
COL6A3P12111 RASSF2-201ENST00000379376 5282 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL6A3P12111 AL353625.1-202ENST00000366273 571 ntBASIC6.11□□□□□ -1.43
COL6A3P12111 RNA5SP171-201ENST00000391071 115 ntBASIC6.11□□□□□ -1.43
COL6A3P12111 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC6.11□□□□□ -1.43
COL6A3P12111 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL6A3P12111 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC6.11□□□□□ -1.43
COL6A3P12111 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC6.11□□□□□ -1.43
COL6A3P12111 AC009120.3-201ENST00000563335 499 ntBASIC6.11□□□□□ -1.43
COL6A3P12111 AC068790.7-201ENST00000602347 528 ntBASIC6.11□□□□□ -1.43
COL6A3P12111 AC099654.6-201ENST00000636487 512 ntBASIC6.11□□□□□ -1.43
COL6A3P12111 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC6.11□□□□□ -1.43
COL6A3P12111 ASNSP1-204ENST00000641977 1664 ntBASIC6.11□□□□□ -1.43
COL6A3P12111 PCAT5-201ENST00000626667 3550 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL6A3P12111 CEP170-203ENST00000366543 6727 ntTSL 5 BASIC6.11□□□□□ -1.43
COL6A3P12111 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL6A3P12111 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL6A3P12111 C1QTNF7-201ENST00000295297 4516 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL6A3P12111 MICAL2-203ENST00000379612 6625 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL6A3P12111 SYNPO2-203ENST00000434046 3588 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL6A3P12111 GUCY1B2-204ENST00000531898 1979 ntBASIC6.11□□□□□ -1.43
COL6A3P12111 DCLK1-202ENST00000360631 8007 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
COL6A3P12111 TNC-201ENST00000341037 6786 ntAPPRIS ALT2 TSL 5 BASIC6.1□□□□□ -1.43
COL6A3P12111 ZC3HAV1-201ENST00000242351 7100 ntAPPRIS P2 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL6A3P12111 EZH1-202ENST00000428826 4623 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL6A3P12111 SOX5-202ENST00000381381 3991 ntTSL 5 BASIC6.1□□□□□ -1.43
COL6A3P12111 STK32A-202ENST00000397936 5393 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
COL6A3P12111 RNU6ATAC34P-201ENST00000408879 121 ntBASIC6.1□□□□□ -1.43
COL6A3P12111 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL6A3P12111 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL6A3P12111 RANP2-201ENST00000456833 229 ntBASIC6.1□□□□□ -1.43
COL6A3P12111 DUBR-205ENST00000495228 411 ntTSL 2 BASIC6.1□□□□□ -1.43
COL6A3P12111 CRYAB-207ENST00000527950 887 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
COL6A3P12111 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC6.1□□□□□ -1.43
COL6A3P12111 MIR4444-1-201ENST00000581696 74 ntBASIC6.1□□□□□ -1.43
COL6A3P12111 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC6.1□□□□□ -1.43
COL6A3P12111 AC027229.1-201ENST00000583887 253 ntBASIC6.1□□□□□ -1.43
COL6A3P12111 MIR4444-2-201ENST00000584390 74 ntBASIC6.1□□□□□ -1.43
COL6A3P12111 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC6.1□□□□□ -1.43
COL6A3P12111 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC6.1□□□□□ -1.43
COL6A3P12111 ALPK1-203ENST00000458497 5410 ntAPPRIS P3 TSL 5 BASIC6.1□□□□□ -1.43
COL6A3P12111 HABP2-201ENST00000351270 3009 ntAPPRIS P3 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL6A3P12111 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
COL6A3P12111 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC6.1□□□□□ -1.43
COL6A3P12111 PHF8-204ENST00000357988 6024 ntAPPRIS ALT2 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL6A3P12111 MID1-212ENST00000616003 1926 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL6A3P12111 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC6.1□□□□□ -1.43
COL6A3P12111 AC084816.1-201ENST00000413794 565 ntTSL 4 BASIC6.1□□□□□ -1.43
COL6A3P12111 LINC01497-201ENST00000420427 665 ntTSL 3 BASIC6.1□□□□□ -1.43
COL6A3P12111 AC019205.1-201ENST00000421830 730 ntBASIC6.1□□□□□ -1.43
COL6A3P12111 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC6.1□□□□□ -1.43
COL6A3P12111 MIR4277-201ENST00000578298 84 ntBASIC6.1□□□□□ -1.43
COL6A3P12111 AC092653.1-201ENST00000608509 531 ntBASIC6.1□□□□□ -1.43
COL6A3P12111 ARFGAP2-230ENST00000629231 213 ntTSL 5 BASIC6.1□□□□□ -1.43
COL6A3P12111 DLEC1-201ENST00000308059 6426 ntAPPRIS P2 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL6A3P12111 AGPAT4-203ENST00000366911 7705 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL6A3P12111 MLYCD-201ENST00000262430 13038 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL6A3P12111 CD163-203ENST00000432237 3701 ntAPPRIS ALT2 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL6A3P12111 ADAL-201ENST00000389651 1559 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL6A3P12111 CD86-209ENST00000493101 1572 ntTSL 2 BASIC6.1□□□□□ -1.43
COL6A3P12111 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC6.1□□□□□ -1.43
COL6A3P12111 WDR19-201ENST00000399820 4520 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL6A3P12111 RNF139-AS1-201ENST00000499418 5654 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL6A3P12111 ALG13-202ENST00000371979 2770 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL6A3P12111 CNTNAP4-206ENST00000478060 3708 ntTSL 5 BASIC6.1□□□□□ -1.43
COL6A3P12111 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL6A3P12111 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC6.1□□□□□ -1.43
COL6A3P12111 AL583856.1-201ENST00000454078 1101 ntBASIC6.1□□□□□ -1.43
COL6A3P12111 AP000851.1-202ENST00000542119 743 ntTSL 3 BASIC6.1□□□□□ -1.43
COL6A3P12111 FAM186A-203ENST00000543096 2116 ntAPPRIS ALT2 TSL 2 BASIC6.1□□□□□ -1.43
COL6A3P12111 AL121579.2-201ENST00000555466 590 ntBASIC6.1□□□□□ -1.43
COL6A3P12111 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC6.1□□□□□ -1.43
COL6A3P12111 OR11H2-202ENST00000641517 1085 ntBASIC6.1□□□□□ -1.43
COL6A3P12111 FRMPD3-201ENST00000276185 7304 ntAPPRIS P2 TSL 5 BASIC6.1□□□□□ -1.43
COL6A3P12111 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL6A3P12111 ARPP21-204ENST00000412048 2506 ntTSL 2 BASIC6.1□□□□□ -1.43
COL6A3P12111 FAM71F1-209ENST00000621392 1591 ntTSL 5 BASIC6.1□□□□□ -1.43
COL6A3P12111 FLNB-212ENST00000490882 8079 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL6A3P12111 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL6A3P12111 AC009120.2-204ENST00000621548 2032 ntBASIC6.09□□□□□ -1.43
COL6A3P12111 MARF1-211ENST00000551742 5900 ntAPPRIS ALT1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL6A3P12111 ANK3-205ENST00000373827 7202 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL6A3P12111 PRDM15-202ENST00000398548 6654 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 79.6 ms