Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 AC096576.2-201ENST00000511835 948 ntTSL 3 BASIC5.56□□□□□ -1.52
SSX3Q99909 SNORD116-30-201ENST00000516468 85 ntBASIC5.56□□□□□ -1.52
SSX3Q99909 AC091987.1-201ENST00000517758 464 ntTSL 3 BASIC5.56□□□□□ -1.52
SSX3Q99909 IGLVVII-41-1-201ENST00000518405 151 ntBASIC5.56□□□□□ -1.52
SSX3Q99909 AC084816.1-202ENST00000536744 647 ntTSL 2 BASIC5.56□□□□□ -1.52
SSX3Q99909 HPS5-207ENST00000537258 1275 ntTSL 5 BASIC5.56□□□□□ -1.52
SSX3Q99909 AC022509.1-203ENST00000541940 708 ntTSL 4 BASIC5.56□□□□□ -1.52
SSX3Q99909 NXPE2P1-201ENST00000543705 726 ntBASIC5.56□□□□□ -1.52
SSX3Q99909 LINC02413-201ENST00000549914 723 ntTSL 5 BASIC5.56□□□□□ -1.52
SSX3Q99909 AL138974.1-201ENST00000551227 741 ntTSL 5 BASIC5.56□□□□□ -1.52
SSX3Q99909 AL161757.5-202ENST00000556696 570 ntTSL 3 BASIC5.56□□□□□ -1.52
SSX3Q99909 SNORA70D-201ENST00000578836 135 ntBASIC5.56□□□□□ -1.52
SSX3Q99909 AC114488.3-201ENST00000581333 480 ntTSL 4 BASIC5.56□□□□□ -1.52
SSX3Q99909 RN7SL66P-201ENST00000582099 264 ntBASIC5.56□□□□□ -1.52
SSX3Q99909 AL512605.1-201ENST00000588215 1263 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SSX3Q99909 AC011516.1-201ENST00000599129 180 ntTSL 3 BASIC5.56□□□□□ -1.52
SSX3Q99909 AC005479.3-201ENST00000602790 431 ntBASIC5.56□□□□□ -1.52
SSX3Q99909 FP325318.1-201ENST00000616097 1263 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SSX3Q99909 AC025287.2-201ENST00000621911 668 ntBASIC5.56□□□□□ -1.52
SSX3Q99909 AC017037.4-201ENST00000624526 826 ntBASIC5.56□□□□□ -1.52
SSX3Q99909 RMDN2-AS1-207ENST00000627614 765 ntTSL 5 BASIC5.56□□□□□ -1.52
SSX3Q99909 MTCO1P7-201ENST00000419523 1542 ntBASIC5.56□□□□□ -1.52
SSX3Q99909 MTCO1P28-201ENST00000574177 1528 ntBASIC5.56□□□□□ -1.52
SSX3Q99909 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
SSX3Q99909 SEC31A-207ENST00000443462 4042 ntTSL 2 BASIC5.56□□□□□ -1.52
SSX3Q99909 TMEM217-202ENST00000356757 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
SSX3Q99909 KLHL5-201ENST00000261425 3425 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SSX3Q99909 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SSX3Q99909 LYSMD3-201ENST00000315948 4259 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SSX3Q99909 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SSX3Q99909 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SSX3Q99909 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
SSX3Q99909 TRAF5-201ENST00000261464 3972 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SSX3Q99909 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC5.56□□□□□ -1.52
SSX3Q99909 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SSX3Q99909 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.55□□□□□ -1.52
SSX3Q99909 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
SSX3Q99909 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC5.55□□□□□ -1.52
SSX3Q99909 ZNF720-202ENST00000398696 1339 ntTSL 4 BASIC5.55□□□□□ -1.52
SSX3Q99909 MEPE-201ENST00000361056 1986 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
SSX3Q99909 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC5.55□□□□□ -1.52
SSX3Q99909 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
SSX3Q99909 CFI-205ENST00000512148 1914 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
SSX3Q99909 AC027279.1-201ENST00000568885 4284 ntBASIC5.55□□□□□ -1.52
SSX3Q99909 MS4A12-201ENST00000016913 1167 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
SSX3Q99909 RN7SKP130-201ENST00000364924 301 ntBASIC5.55□□□□□ -1.52
SSX3Q99909 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SSX3Q99909 AP000812.1-201ENST00000378140 477 ntTSL 3 BASIC5.55□□□□□ -1.52
SSX3Q99909 MIR551B-201ENST00000384984 96 ntBASIC5.55□□□□□ -1.52
SSX3Q99909 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
SSX3Q99909 IGHV2-26-201ENST00000390611 381 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
SSX3Q99909 CD200R1L-201ENST00000398214 1296 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
SSX3Q99909 ARSFP1-201ENST00000398758 477 ntBASIC5.55□□□□□ -1.52
SSX3Q99909 MIR1266-201ENST00000408125 84 ntBASIC5.55□□□□□ -1.52
SSX3Q99909 RN7SKP271-201ENST00000410528 320 ntBASIC5.55□□□□□ -1.52
SSX3Q99909 AC005162.1-201ENST00000416513 389 ntTSL 5 BASIC5.55□□□□□ -1.52
SSX3Q99909 AL451164.1-201ENST00000417149 390 ntTSL 3 BASIC5.55□□□□□ -1.52
SSX3Q99909 CD33-203ENST00000421133 1023 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SSX3Q99909 AL021707.2-202ENST00000422408 1080 ntTSL 3 BASIC5.55□□□□□ -1.52
SSX3Q99909 AP003385.1-201ENST00000426387 893 ntBASIC5.55□□□□□ -1.52
SSX3Q99909 TPTE2P1-204ENST00000435256 593 ntBASIC5.55□□□□□ -1.52
SSX3Q99909 HMGN1P6-201ENST00000438508 291 ntBASIC5.55□□□□□ -1.52
SSX3Q99909 ZNF138-205ENST00000440155 1066 ntAPPRIS P3 TSL 2 BASIC5.55□□□□□ -1.52
SSX3Q99909 AL445623.1-201ENST00000440888 237 ntTSL 3 BASIC5.55□□□□□ -1.52
SSX3Q99909 AL356121.1-201ENST00000442911 156 ntBASIC5.55□□□□□ -1.52
SSX3Q99909 WDR82P2-201ENST00000444540 928 ntBASIC5.55□□□□□ -1.52
SSX3Q99909 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC5.55□□□□□ -1.52
SSX3Q99909 CCDC13-AS1-202ENST00000446950 554 ntTSL 4 BASIC5.55□□□□□ -1.52
SSX3Q99909 ZNF197-AS1-201ENST00000447691 623 ntTSL 5 BASIC5.55□□□□□ -1.52
SSX3Q99909 RPL31P11-202ENST00000454082 372 ntBASIC5.55□□□□□ -1.52
SSX3Q99909 CEACAMP11-201ENST00000455211 583 ntBASIC5.55□□□□□ -1.52
SSX3Q99909 UOX-201ENST00000471089 899 ntBASIC5.55□□□□□ -1.52
SSX3Q99909 RN7SL165P-201ENST00000477476 291 ntBASIC5.55□□□□□ -1.52
SSX3Q99909 ZNF138-207ENST00000494380 842 ntTSL 2 BASIC5.55□□□□□ -1.52
SSX3Q99909 AC009567.2-201ENST00000502989 349 ntBASIC5.55□□□□□ -1.52
SSX3Q99909 AC107909.1-201ENST00000523226 595 ntTSL 5 BASIC5.55□□□□□ -1.52
SSX3Q99909 AL137224.1-201ENST00000527984 389 ntTSL 2 BASIC5.55□□□□□ -1.52
SSX3Q99909 TPPP2-208ENST00000530140 703 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
SSX3Q99909 AC027026.1-201ENST00000532323 742 ntBASIC5.55□□□□□ -1.52
SSX3Q99909 RAB30-209ENST00000532548 644 ntTSL 3 BASIC5.55□□□□□ -1.52
SSX3Q99909 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC5.55□□□□□ -1.52
SSX3Q99909 AC087392.1-201ENST00000576252 820 ntTSL 2 BASIC5.55□□□□□ -1.52
SSX3Q99909 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC5.55□□□□□ -1.52
SSX3Q99909 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC5.55□□□□□ -1.52
SSX3Q99909 AC010487.1-201ENST00000594408 1172 ntBASIC5.55□□□□□ -1.52
SSX3Q99909 AC091193.1-201ENST00000604640 448 ntBASIC5.55□□□□□ -1.52
SSX3Q99909 AL159169.2-201ENST00000610061 1269 ntBASIC5.55□□□□□ -1.52
SSX3Q99909 AL137000.1-201ENST00000610528 1244 ntBASIC5.55□□□□□ -1.52
SSX3Q99909 DAPL1-204ENST00000621326 671 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SSX3Q99909 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
SSX3Q99909 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SSX3Q99909 AC245100.2-201ENST00000454544 1679 ntBASIC5.55□□□□□ -1.52
SSX3Q99909 AC025809.2-201ENST00000625085 1802 ntBASIC5.55□□□□□ -1.52
SSX3Q99909 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
SSX3Q99909 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SSX3Q99909 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
SSX3Q99909 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
SSX3Q99909 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
SSX3Q99909 IL5RA-209ENST00000446632 2514 ntAPPRIS P4 TSL 5 BASIC5.54□□□□□ -1.52
SSX3Q99909 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 207.8 ms