Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 CRYZL1-217ENST00000445393 824 ntTSL 5 BASIC5.55□□□□□ -1.52
NKX3-1Q99801 RSL24D1P2-201ENST00000445584 366 ntBASIC5.55□□□□□ -1.52
NKX3-1Q99801 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC5.55□□□□□ -1.52
NKX3-1Q99801 FCF1P7-201ENST00000451185 558 ntBASIC5.55□□□□□ -1.52
NKX3-1Q99801 AC074286.1-201ENST00000452002 544 ntTSL 4 BASIC5.55□□□□□ -1.52
NKX3-1Q99801 RN7SKP198-201ENST00000459286 306 ntBASIC5.55□□□□□ -1.52
NKX3-1Q99801 AC063955.1-201ENST00000462872 685 ntBASIC5.55□□□□□ -1.52
NKX3-1Q99801 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC5.55□□□□□ -1.52
NKX3-1Q99801 AC004594.1-201ENST00000482375 463 ntTSL 3 BASIC5.55□□□□□ -1.52
NKX3-1Q99801 MTND3P6-201ENST00000485242 339 ntBASIC5.55□□□□□ -1.52
NKX3-1Q99801 RN7SL655P-201ENST00000486087 298 ntBASIC5.55□□□□□ -1.52
NKX3-1Q99801 AL133372.1-201ENST00000493565 745 ntBASIC5.55□□□□□ -1.52
NKX3-1Q99801 RN7SL612P-201ENST00000497704 295 ntBASIC5.55□□□□□ -1.52
NKX3-1Q99801 AC009567.2-201ENST00000502989 349 ntBASIC5.55□□□□□ -1.52
NKX3-1Q99801 AC091965.3-201ENST00000506236 208 ntBASIC5.55□□□□□ -1.52
NKX3-1Q99801 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC5.55□□□□□ -1.52
NKX3-1Q99801 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC5.55□□□□□ -1.52
NKX3-1Q99801 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC5.55□□□□□ -1.52
NKX3-1Q99801 OPCML-IT2-201ENST00000533260 398 ntTSL 4 BASIC5.55□□□□□ -1.52
NKX3-1Q99801 CNIH1-205ENST00000556113 523 ntAPPRIS ALT1 TSL 2 BASIC5.55□□□□□ -1.52
NKX3-1Q99801 AC234775.3-201ENST00000564612 656 ntBASIC5.55□□□□□ -1.52
NKX3-1Q99801 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC5.55□□□□□ -1.52
NKX3-1Q99801 AC087392.1-201ENST00000576252 820 ntTSL 2 BASIC5.55□□□□□ -1.52
NKX3-1Q99801 AC233702.7-202ENST00000582941 211 ntBASIC5.55□□□□□ -1.52
NKX3-1Q99801 AC247036.1-201ENST00000605005 389 ntTSL 2 BASIC5.55□□□□□ -1.52
NKX3-1Q99801 AC015574.1-205ENST00000611285 524 ntTSL 5 BASIC5.55□□□□□ -1.52
NKX3-1Q99801 AL445649.1-201ENST00000615941 691 ntBASIC5.55□□□□□ -1.52
NKX3-1Q99801 AL138693.1-201ENST00000622219 129 ntBASIC5.55□□□□□ -1.52
NKX3-1Q99801 AL132640.3-201ENST00000630473 177 ntBASIC5.55□□□□□ -1.52
NKX3-1Q99801 CLUHP10-201ENST00000631979 980 ntBASIC5.55□□□□□ -1.52
NKX3-1Q99801 FAM83B-201ENST00000306858 3167 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
NKX3-1Q99801 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC5.55□□□□□ -1.52
NKX3-1Q99801 PTPN2-212ENST00000591497 3390 ntTSL 5 BASIC5.55□□□□□ -1.52
NKX3-1Q99801 AL121768.1-201ENST00000613917 2544 ntBASIC5.55□□□□□ -1.52
NKX3-1Q99801 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
NKX3-1Q99801 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC5.55□□□□□ -1.52
NKX3-1Q99801 CREM-203ENST00000344351 1625 ntTSL 2 BASIC5.55□□□□□ -1.52
NKX3-1Q99801 AL353763.1-201ENST00000624467 1628 ntBASIC5.55□□□□□ -1.52
NKX3-1Q99801 ASNS-209ENST00000444334 1812 ntTSL 2 BASIC5.55□□□□□ -1.52
NKX3-1Q99801 AC105235.1-201ENST00000623208 1816 ntBASIC5.55□□□□□ -1.52
NKX3-1Q99801 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC5.55□□□□□ -1.52
NKX3-1Q99801 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
NKX3-1Q99801 GPR1-209ENST00000612892 2565 ntAPPRIS P1 TSL 4 BASIC5.55□□□□□ -1.52
NKX3-1Q99801 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC5.55□□□□□ -1.52
NKX3-1Q99801 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
NKX3-1Q99801 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
NKX3-1Q99801 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
NKX3-1Q99801 AL359955.1-201ENST00000455242 3275 ntBASIC5.54□□□□□ -1.52
NKX3-1Q99801 CYP51A1-204ENST00000450723 1729 ntTSL 2 BASIC5.54□□□□□ -1.52
NKX3-1Q99801 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC5.54□□□□□ -1.52
NKX3-1Q99801 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
NKX3-1Q99801 AMY2A-204ENST00000622339 1862 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
NKX3-1Q99801 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
NKX3-1Q99801 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
NKX3-1Q99801 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
NKX3-1Q99801 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC5.54□□□□□ -1.52
NKX3-1Q99801 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC5.54□□□□□ -1.52
NKX3-1Q99801 GSTA5-201ENST00000284562 845 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
NKX3-1Q99801 FASLG-201ENST00000340030 917 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
NKX3-1Q99801 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
NKX3-1Q99801 VTRNA3-1P-201ENST00000362552 102 ntBASIC5.54□□□□□ -1.52
NKX3-1Q99801 RNA5SP321-201ENST00000362722 111 ntBASIC5.54□□□□□ -1.52
NKX3-1Q99801 U3.52-201ENST00000384034 216 ntBASIC5.54□□□□□ -1.52
NKX3-1Q99801 AL360271.1-201ENST00000395679 510 ntBASIC5.54□□□□□ -1.52
NKX3-1Q99801 MIR1266-201ENST00000408125 84 ntBASIC5.54□□□□□ -1.52
NKX3-1Q99801 OR2A2-201ENST00000408979 1051 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
NKX3-1Q99801 CCL20-202ENST00000409189 839 ntAPPRIS ALT1 TSL 1 (best) BASIC5.54□□□□□ -1.52
NKX3-1Q99801 CASKP1-201ENST00000412870 582 ntBASIC5.54□□□□□ -1.52
NKX3-1Q99801 AL121823.1-201ENST00000418369 741 ntTSL 3 BASIC5.54□□□□□ -1.52
NKX3-1Q99801 AC244453.4-201ENST00000419150 388 ntBASIC5.54□□□□□ -1.52
NKX3-1Q99801 RPS17P17-201ENST00000419392 409 ntBASIC5.54□□□□□ -1.52
NKX3-1Q99801 AL135785.1-201ENST00000422554 399 ntTSL 3 BASIC5.54□□□□□ -1.52
NKX3-1Q99801 ZRANB2-AS1-201ENST00000426999 607 ntTSL 3 BASIC5.54□□□□□ -1.52
NKX3-1Q99801 TRBV29OR9-2-201ENST00000427589 333 ntBASIC5.54□□□□□ -1.52
NKX3-1Q99801 UBE2V2P1-201ENST00000434717 398 ntBASIC5.54□□□□□ -1.52
NKX3-1Q99801 ATP6V1G1P4-201ENST00000438388 335 ntBASIC5.54□□□□□ -1.52
NKX3-1Q99801 AP006216.1-201ENST00000439104 419 ntTSL 3 BASIC5.54□□□□□ -1.52
NKX3-1Q99801 HMGN1P32-201ENST00000441744 256 ntBASIC5.54□□□□□ -1.52
NKX3-1Q99801 TVP23CP1-201ENST00000450317 639 ntBASIC5.54□□□□□ -1.52
NKX3-1Q99801 AC007386.1-201ENST00000455212 582 ntBASIC5.54□□□□□ -1.52
NKX3-1Q99801 AL117382.2-201ENST00000455642 403 ntTSL 3 BASIC5.54□□□□□ -1.52
NKX3-1Q99801 RN7SL372P-201ENST00000461982 298 ntBASIC5.54□□□□□ -1.52
NKX3-1Q99801 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC5.54□□□□□ -1.52
NKX3-1Q99801 GPX6-202ENST00000474923 716 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
NKX3-1Q99801 RN7SL502P-201ENST00000481857 290 ntBASIC5.54□□□□□ -1.52
NKX3-1Q99801 AC109588.1-201ENST00000507759 726 ntTSL 3 BASIC5.54□□□□□ -1.52
NKX3-1Q99801 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
NKX3-1Q99801 RNA5SP318-201ENST00000516352 92 ntBASIC5.54□□□□□ -1.52
NKX3-1Q99801 SNORD116-30-201ENST00000516468 85 ntBASIC5.54□□□□□ -1.52
NKX3-1Q99801 IGLVVII-41-1-201ENST00000518405 151 ntBASIC5.54□□□□□ -1.52
NKX3-1Q99801 IGHV1-14-201ENST00000523391 241 ntBASIC5.54□□□□□ -1.52
NKX3-1Q99801 AC090791.1-201ENST00000530960 492 ntTSL 3 BASIC5.54□□□□□ -1.52
NKX3-1Q99801 LDHC-205ENST00000537486 583 ntTSL 5 BASIC5.54□□□□□ -1.52
NKX3-1Q99801 AL162632.2-201ENST00000553933 399 ntBASIC5.54□□□□□ -1.52
NKX3-1Q99801 AC103740.1-202ENST00000558404 542 ntTSL 4 BASIC5.54□□□□□ -1.52
NKX3-1Q99801 CNEP1R1-204ENST00000562576 656 ntTSL 5 BASIC5.54□□□□□ -1.52
NKX3-1Q99801 TTC39C-204ENST00000577185 533 ntTSL 3 BASIC5.54□□□□□ -1.52
NKX3-1Q99801 PPIAL4A-201ENST00000577856 660 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
NKX3-1Q99801 AC012593.1-208ENST00000587791 696 ntTSL 5 BASIC5.54□□□□□ -1.52
NKX3-1Q99801 AC009303.3-201ENST00000591103 736 ntBASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms