Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 LMCD1-AS1-202ENST00000439407 576 ntTSL 4 BASIC5.87□□□□□ -1.47
VPS13AQ96RL7 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC5.87□□□□□ -1.47
VPS13AQ96RL7 RPS3AP15-201ENST00000483874 781 ntBASIC5.87□□□□□ -1.47
VPS13AQ96RL7 AC117395.1-201ENST00000487390 403 ntBASIC5.87□□□□□ -1.47
VPS13AQ96RL7 HOTTIP_3.1-201ENST00000619957 337 ntBASIC5.87□□□□□ -1.47
VPS13AQ96RL7 MIR6758-201ENST00000620653 63 ntBASIC5.87□□□□□ -1.47
VPS13AQ96RL7 MIR7641-1-201ENST00000627518 61 ntBASIC5.87□□□□□ -1.47
VPS13AQ96RL7 GBF1-201ENST00000369983 6403 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
VPS13AQ96RL7 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
VPS13AQ96RL7 FANCL-201ENST00000233741 1683 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
VPS13AQ96RL7 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC5.87□□□□□ -1.47
VPS13AQ96RL7 IL5RA-207ENST00000438560 2252 ntAPPRIS ALT2 TSL 2 BASIC5.87□□□□□ -1.47
VPS13AQ96RL7 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
VPS13AQ96RL7 AC010624.4-201ENST00000597606 1351 ntBASIC5.86□□□□□ -1.47
VPS13AQ96RL7 NEDD4L-204ENST00000382850 8251 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
VPS13AQ96RL7 SALL1-201ENST00000251020 5146 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
VPS13AQ96RL7 TRERF1-205ENST00000541110 7646 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
VPS13AQ96RL7 ANKRD17-202ENST00000358602 10784 ntAPPRIS P4 TSL 5 BASIC5.86□□□□□ -1.47
VPS13AQ96RL7 OR7D2-203ENST00000642043 3157 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
VPS13AQ96RL7 OR11H13P-201ENST00000359695 979 ntBASIC5.86□□□□□ -1.47
VPS13AQ96RL7 ANKRD54P1-201ENST00000433115 471 ntBASIC5.86□□□□□ -1.47
VPS13AQ96RL7 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC5.86□□□□□ -1.47
VPS13AQ96RL7 RPEP1-201ENST00000504507 658 ntBASIC5.86□□□□□ -1.47
VPS13AQ96RL7 AC063949.1-201ENST00000552900 865 ntBASIC5.86□□□□□ -1.47
VPS13AQ96RL7 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC5.86□□□□□ -1.47
VPS13AQ96RL7 MIR3189-201ENST00000578735 73 ntBASIC5.86□□□□□ -1.47
VPS13AQ96RL7 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC5.86□□□□□ -1.47
VPS13AQ96RL7 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC5.86□□□□□ -1.47
VPS13AQ96RL7 KCNMA1-AS1-204ENST00000595702 504 ntTSL 5 BASIC5.86□□□□□ -1.47
VPS13AQ96RL7 AC234771.5-201ENST00000600161 514 ntBASIC5.86□□□□□ -1.47
VPS13AQ96RL7 PPATP2-201ENST00000605635 508 ntBASIC5.86□□□□□ -1.47
VPS13AQ96RL7 AL133406.3-201ENST00000606817 541 ntBASIC5.86□□□□□ -1.47
VPS13AQ96RL7 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
VPS13AQ96RL7 SVEP1-203ENST00000401783 12350 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
VPS13AQ96RL7 UBA2-202ENST00000439527 2802 ntTSL 2 BASIC5.86□□□□□ -1.47
VPS13AQ96RL7 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
VPS13AQ96RL7 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
VPS13AQ96RL7 AC114786.1-201ENST00000512892 1415 ntBASIC5.86□□□□□ -1.47
VPS13AQ96RL7 TEKT1-201ENST00000338694 3421 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
VPS13AQ96RL7 SUPT6H-201ENST00000314616 6523 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
VPS13AQ96RL7 KRT39-201ENST00000355612 1696 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
VPS13AQ96RL7 KIDINS220-201ENST00000256707 7361 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
VPS13AQ96RL7 RPL7L1-208ENST00000493763 4476 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
VPS13AQ96RL7 AL159987.1-201ENST00000347911 293 ntBASIC5.86□□□□□ -1.47
VPS13AQ96RL7 AL360271.1-201ENST00000395679 510 ntBASIC5.86□□□□□ -1.47
VPS13AQ96RL7 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC5.86□□□□□ -1.47
VPS13AQ96RL7 RANP2-201ENST00000456833 229 ntBASIC5.86□□□□□ -1.47
VPS13AQ96RL7 AC020898.1-201ENST00000474167 787 ntBASIC5.86□□□□□ -1.47
VPS13AQ96RL7 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC5.86□□□□□ -1.47
VPS13AQ96RL7 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC5.86□□□□□ -1.47
VPS13AQ96RL7 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC5.86□□□□□ -1.47
VPS13AQ96RL7 ZNF233-205ENST00000592581 2938 ntTSL 2 BASIC5.86□□□□□ -1.47
VPS13AQ96RL7 HUWE1-202ENST00000262854 14739 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
VPS13AQ96RL7 LIMCH1-203ENST00000396595 5740 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
VPS13AQ96RL7 LGSN-204ENST00000622415 1612 ntTSL 2 BASIC5.86□□□□□ -1.47
VPS13AQ96RL7 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
VPS13AQ96RL7 TTC39B-207ENST00000507993 1950 ntAPPRIS ALT2 TSL 2 BASIC5.86□□□□□ -1.47
VPS13AQ96RL7 IGF1R-206ENST00000558762 11726 ntAPPRIS ALT1 TSL 1 (best) BASIC5.86□□□□□ -1.47
VPS13AQ96RL7 PCDHB1-201ENST00000306549 8210 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
VPS13AQ96RL7 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
VPS13AQ96RL7 RRS1-AS1-201ENST00000499642 4366 ntTSL 2 BASIC5.86□□□□□ -1.47
VPS13AQ96RL7 RNU1-46P-201ENST00000384425 164 ntBASIC5.85□□□□□ -1.47
VPS13AQ96RL7 AC108075.1-201ENST00000424692 529 ntBASIC5.85□□□□□ -1.47
VPS13AQ96RL7 AC245047.1-201ENST00000433276 873 ntBASIC5.85□□□□□ -1.47
VPS13AQ96RL7 AL663074.2-201ENST00000440621 479 ntBASIC5.85□□□□□ -1.47
VPS13AQ96RL7 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 AC126177.5-201ENST00000549599 178 ntBASIC5.85□□□□□ -1.47
VPS13AQ96RL7 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 AC018809.2-201ENST00000602436 3823 ntBASIC5.85□□□□□ -1.47
VPS13AQ96RL7 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 TLR1-201ENST00000308979 2849 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 AC137056.2-201ENST00000624055 1958 ntBASIC5.85□□□□□ -1.47
VPS13AQ96RL7 ANKFY1-209ENST00000574367 5033 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 OR56B1-201ENST00000317121 2075 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 FAM19A2-211ENST00000550003 2499 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 AMOTL1-203ENST00000433060 8970 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 INTS2-201ENST00000251334 4255 ntAPPRIS P1 TSL 2 BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 AP004289.1-201ENST00000436307 2205 ntBASIC5.85□□□□□ -1.47
VPS13AQ96RL7 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 TNR-202ENST00000367674 12949 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 NRIR-201ENST00000366140 799 ntTSL 3 BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 Z98949.3-201ENST00000436423 472 ntTSL 5 BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 NPM1P51-201ENST00000443470 744 ntBASIC5.85□□□□□ -1.47
VPS13AQ96RL7 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 SNRPCP2-201ENST00000504370 475 ntBASIC5.85□□□□□ -1.47
VPS13AQ96RL7 RPA2P3-201ENST00000533268 770 ntBASIC5.85□□□□□ -1.47
VPS13AQ96RL7 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 AC068831.8-201ENST00000620171 435 ntBASIC5.85□□□□□ -1.47
VPS13AQ96RL7 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 TENM2-207ENST00000520394 8034 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 ST3GAL1-207ENST00000521180 6951 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 GNL2P1-201ENST00000451274 2190 ntBASIC5.85□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 95.4 ms