Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 SSBP1-205ENST00000465582 731 ntAPPRIS P1 TSL 5 BASIC7.42□□□□□ -1.22
SMARCA1P28370 AC044810.1-201ENST00000480271 711 ntBASIC7.42□□□□□ -1.22
SMARCA1P28370 MTND3P3-201ENST00000505004 126 ntBASIC7.42□□□□□ -1.22
SMARCA1P28370 RN7SKP98-201ENST00000517070 156 ntBASIC7.42□□□□□ -1.22
SMARCA1P28370 AC090592.1-202ENST00000533049 568 ntTSL 4 BASIC7.42□□□□□ -1.22
SMARCA1P28370 ANP32E-205ENST00000533654 908 ntTSL 2 BASIC7.42□□□□□ -1.22
SMARCA1P28370 TMEM126B-211ENST00000534341 1273 ntTSL 2 BASIC7.42□□□□□ -1.22
SMARCA1P28370 AC103740.1-202ENST00000558404 542 ntTSL 4 BASIC7.42□□□□□ -1.22
SMARCA1P28370 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC7.42□□□□□ -1.22
SMARCA1P28370 AC090286.3-201ENST00000573133 187 ntBASIC7.42□□□□□ -1.22
SMARCA1P28370 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC7.42□□□□□ -1.22
SMARCA1P28370 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC7.42□□□□□ -1.22
SMARCA1P28370 LINC01676-209ENST00000623043 896 ntTSL 4 BASIC7.42□□□□□ -1.22
SMARCA1P28370 CASC22-202ENST00000628396 802 ntTSL 5 BASIC7.42□□□□□ -1.22
SMARCA1P28370 PRRC1-202ENST00000442138 5504 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
SMARCA1P28370 CYP19A1-202ENST00000396404 2388 ntAPPRIS P1 TSL 2 BASIC7.42□□□□□ -1.22
SMARCA1P28370 BIRC6-201ENST00000421745 15703 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
SMARCA1P28370 SYT4-201ENST00000255224 4110 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
SMARCA1P28370 FABP2-201ENST00000274024 2478 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
SMARCA1P28370 TRG-AS1-201ENST00000629357 3645 ntTSL 2 BASIC7.42□□□□□ -1.22
SMARCA1P28370 AC137056.2-201ENST00000624055 1958 ntBASIC7.42□□□□□ -1.22
SMARCA1P28370 CNKSR3-205ENST00000607772 21063 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
SMARCA1P28370 TCF7L2-218ENST00000538897 4000 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
SMARCA1P28370 CCDC150-202ENST00000409270 2243 ntAPPRIS ALT2 TSL 5 BASIC7.42□□□□□ -1.22
SMARCA1P28370 ZNF83-205ENST00000594682 2890 ntTSL 4 BASIC7.41□□□□□ -1.22
SMARCA1P28370 SEL1L3-203ENST00000502949 3500 ntTSL 2 BASIC7.41□□□□□ -1.22
SMARCA1P28370 GRIP1-202ENST00000398016 4888 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
SMARCA1P28370 MEF2C-AS1-214ENST00000514794 2350 ntTSL 4 BASIC7.41□□□□□ -1.22
SMARCA1P28370 C1orf27-202ENST00000367470 3754 ntTSL 5 BASIC7.41□□□□□ -1.22
SMARCA1P28370 GABRR1-206ENST00000611484 3259 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
SMARCA1P28370 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC7.41□□□□□ -1.22
SMARCA1P28370 AL136984.1-201ENST00000607611 1893 ntBASIC7.41□□□□□ -1.22
SMARCA1P28370 TMEM132B-201ENST00000299308 10906 ntAPPRIS P3 TSL 5 BASIC7.41□□□□□ -1.22
SMARCA1P28370 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC7.41□□□□□ -1.22
SMARCA1P28370 FAM161A-202ENST00000404929 3762 ntAPPRIS ALT2 TSL 1 (best) BASIC7.41□□□□□ -1.22
SMARCA1P28370 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC7.41□□□□□ -1.22
SMARCA1P28370 AL139805.1-201ENST00000407837 289 ntBASIC7.41□□□□□ -1.22
SMARCA1P28370 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC7.41□□□□□ -1.22
SMARCA1P28370 NUTM2A-AS1-203ENST00000413961 501 ntTSL 3 BASIC7.41□□□□□ -1.22
SMARCA1P28370 SEC63P1-201ENST00000425785 1258 ntBASIC7.41□□□□□ -1.22
SMARCA1P28370 AC099782.1-201ENST00000425889 474 ntBASIC7.41□□□□□ -1.22
SMARCA1P28370 AC097721.1-201ENST00000427150 1253 ntBASIC7.41□□□□□ -1.22
SMARCA1P28370 AC005532.1-201ENST00000430266 471 ntTSL 5 BASIC7.41□□□□□ -1.22
SMARCA1P28370 AC096632.2-201ENST00000438139 1239 ntBASIC7.41□□□□□ -1.22
SMARCA1P28370 AP000949.1-201ENST00000438328 629 ntBASIC7.41□□□□□ -1.22
SMARCA1P28370 COX4I1P2-201ENST00000447446 547 ntBASIC7.41□□□□□ -1.22
SMARCA1P28370 AC136489.1-203ENST00000450246 736 ntTSL 5 BASIC7.41□□□□□ -1.22
SMARCA1P28370 VN1R38P-201ENST00000450265 887 ntBASIC7.41□□□□□ -1.22
SMARCA1P28370 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC7.41□□□□□ -1.22
SMARCA1P28370 SNX18P26-201ENST00000458433 740 ntBASIC7.41□□□□□ -1.22
SMARCA1P28370 AP002371.1-201ENST00000463604 433 ntBASIC7.41□□□□□ -1.22
SMARCA1P28370 AC090589.1-201ENST00000473109 362 ntBASIC7.41□□□□□ -1.22
SMARCA1P28370 GM2AP2-201ENST00000491764 562 ntBASIC7.41□□□□□ -1.22
SMARCA1P28370 AL117692.1-201ENST00000494283 713 ntBASIC7.41□□□□□ -1.22
SMARCA1P28370 COX6B1P4-201ENST00000519826 484 ntBASIC7.41□□□□□ -1.22
SMARCA1P28370 AC022973.3-201ENST00000521014 467 ntTSL 5 BASIC7.41□□□□□ -1.22
SMARCA1P28370 NEDD8-203ENST00000524927 653 ntTSL 2 BASIC7.41□□□□□ -1.22
SMARCA1P28370 KCTD9P4-201ENST00000526766 1166 ntBASIC7.41□□□□□ -1.22
SMARCA1P28370 NAV2-IT1-201ENST00000528204 506 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
SMARCA1P28370 HNRNPRP2-201ENST00000528421 743 ntBASIC7.41□□□□□ -1.22
SMARCA1P28370 OR4A41P-201ENST00000533053 928 ntBASIC7.41□□□□□ -1.22
SMARCA1P28370 OLR1-209ENST00000543993 822 ntTSL 2 BASIC7.41□□□□□ -1.22
SMARCA1P28370 AL121579.2-201ENST00000555466 590 ntBASIC7.41□□□□□ -1.22
SMARCA1P28370 AL359232.1-202ENST00000556874 1206 ntTSL 2 BASIC7.41□□□□□ -1.22
SMARCA1P28370 AC121758.1-202ENST00000556917 658 ntBASIC7.41□□□□□ -1.22
SMARCA1P28370 AL158211.2-201ENST00000607282 395 ntBASIC7.41□□□□□ -1.22
SMARCA1P28370 AL359091.2-201ENST00000609303 556 ntBASIC7.41□□□□□ -1.22
SMARCA1P28370 MIR6811-201ENST00000620409 58 ntBASIC7.41□□□□□ -1.22
SMARCA1P28370 AL122023.1-201ENST00000622847 530 ntBASIC7.41□□□□□ -1.22
SMARCA1P28370 POLQ-204ENST00000621776 9055 ntTSL 5 BASIC7.41□□□□□ -1.22
SMARCA1P28370 FOXJ3-209ENST00000545068 5165 ntAPPRIS P3 TSL 5 BASIC7.41□□□□□ -1.22
SMARCA1P28370 PAX8-AS1-202ENST00000422956 11799 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
SMARCA1P28370 C11orf1-203ENST00000529270 1437 ntTSL 2 BASIC7.41□□□□□ -1.22
SMARCA1P28370 CLSTN2-201ENST00000458420 14202 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
SMARCA1P28370 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC7.41□□□□□ -1.22
SMARCA1P28370 SLC25A40-201ENST00000341119 4045 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
SMARCA1P28370 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC7.41□□□□□ -1.22
SMARCA1P28370 SPINK5-203ENST00000398454 2915 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
SMARCA1P28370 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
SMARCA1P28370 AC022905.1-201ENST00000503430 3048 ntBASIC7.41□□□□□ -1.22
SMARCA1P28370 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
SMARCA1P28370 PAK3-203ENST00000372007 8940 ntAPPRIS P3 TSL 1 (best) BASIC7.4□□□□□ -1.22
SMARCA1P28370 LINC01616-201ENST00000561816 2280 ntBASIC7.4□□□□□ -1.22
SMARCA1P28370 AC007744.1-201ENST00000607540 2289 ntTSL 5 BASIC7.4□□□□□ -1.22
SMARCA1P28370 TCF7L2-220ENST00000543371 4037 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
SMARCA1P28370 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC7.4□□□□□ -1.22
SMARCA1P28370 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
SMARCA1P28370 DCLK1-208ENST00000615680 7592 ntTSL 2 BASIC7.4□□□□□ -1.22
SMARCA1P28370 RNA5SP77-201ENST00000365394 120 ntBASIC7.4□□□□□ -1.22
SMARCA1P28370 OR6K3-202ENST00000368146 996 ntBASIC7.4□□□□□ -1.22
SMARCA1P28370 RFPL3S-201ENST00000382084 1117 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
SMARCA1P28370 PPARG-204ENST00000397000 1122 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
SMARCA1P28370 AC003045.1-201ENST00000398779 713 ntBASIC7.4□□□□□ -1.22
SMARCA1P28370 CCL20-202ENST00000409189 839 ntAPPRIS ALT1 TSL 1 (best) BASIC7.4□□□□□ -1.22
SMARCA1P28370 RPL6-202ENST00000424576 1074 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
SMARCA1P28370 AL161793.1-201ENST00000435021 445 ntTSL 3 BASIC7.4□□□□□ -1.22
SMARCA1P28370 AF127936.1-201ENST00000435315 695 ntTSL 3 BASIC7.4□□□□□ -1.22
SMARCA1P28370 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC7.4□□□□□ -1.22
SMARCA1P28370 POU5F1P5-201ENST00000445059 658 ntBASIC7.4□□□□□ -1.22
SMARCA1P28370 XXYLT1-AS2-202ENST00000447975 784 ntTSL 2 BASIC7.4□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 108.1 ms