Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC091965.3-201ENST00000506236 208 ntBASIC5.69□□□□□ -1.5
SKA3Q8IX90 AC110011.1-201ENST00000518260 582 ntTSL 3 BASIC5.69□□□□□ -1.5
SKA3Q8IX90 KCTD9P4-201ENST00000526766 1166 ntBASIC5.69□□□□□ -1.5
SKA3Q8IX90 GLYAT-203ENST00000529732 1070 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
SKA3Q8IX90 AC100768.2-201ENST00000534068 683 ntTSL 3 BASIC5.69□□□□□ -1.5
SKA3Q8IX90 AC078778.2-201ENST00000553061 567 ntTSL 5 BASIC5.69□□□□□ -1.5
SKA3Q8IX90 DSG1-AS1-202ENST00000578477 588 ntTSL 3 BASIC5.69□□□□□ -1.5
SKA3Q8IX90 SETP3-201ENST00000581726 813 ntBASIC5.69□□□□□ -1.5
SKA3Q8IX90 ZNF137P-202ENST00000597158 308 ntTSL 3 BASIC5.69□□□□□ -1.5
SKA3Q8IX90 ZNF675-208ENST00000601010 669 ntTSL 5 BASIC5.69□□□□□ -1.5
SKA3Q8IX90 PCGEM1-202ENST00000606314 759 ntTSL 5 BASIC5.69□□□□□ -1.5
SKA3Q8IX90 MUC1-221ENST00000610359 1101 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SKA3Q8IX90 AC068726.1-201ENST00000610993 341 ntBASIC5.69□□□□□ -1.5
SKA3Q8IX90 MUC1-227ENST00000615517 951 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SKA3Q8IX90 SOX9-AS1-218ENST00000628742 733 ntTSL 5 BASIC5.69□□□□□ -1.5
SKA3Q8IX90 TTN-AS1-268ENST00000629094 604 ntTSL 5 BASIC5.69□□□□□ -1.5
SKA3Q8IX90 SCML2-202ENST00000398048 1334 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SKA3Q8IX90 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC5.69□□□□□ -1.5
SKA3Q8IX90 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SKA3Q8IX90 NBPF19-205ENST00000612881 3715 ntTSL 5 BASIC5.69□□□□□ -1.5
SKA3Q8IX90 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SKA3Q8IX90 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SKA3Q8IX90 LINC01224-203ENST00000596283 2766 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SKA3Q8IX90 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC5.68□□□□□ -1.5
SKA3Q8IX90 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
SKA3Q8IX90 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SKA3Q8IX90 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SKA3Q8IX90 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SKA3Q8IX90 ERG-202ENST00000398897 4651 ntTSL 5 BASIC5.68□□□□□ -1.5
SKA3Q8IX90 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC5.68□□□□□ -1.5
SKA3Q8IX90 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SKA3Q8IX90 C3orf49-201ENST00000295896 1292 ntAPPRIS P5 TSL 2 BASIC5.68□□□□□ -1.5
SKA3Q8IX90 NOP10-201ENST00000328848 554 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SKA3Q8IX90 AL050335.1-201ENST00000396909 869 ntBASIC5.68□□□□□ -1.5
SKA3Q8IX90 NPM1P37-201ENST00000403105 874 ntBASIC5.68□□□□□ -1.5
SKA3Q8IX90 RN7SKP221-201ENST00000410420 301 ntBASIC5.68□□□□□ -1.5
SKA3Q8IX90 LINC00434-201ENST00000423739 419 ntTSL 3 BASIC5.68□□□□□ -1.5
SKA3Q8IX90 MRPS21P2-201ENST00000424704 264 ntBASIC5.68□□□□□ -1.5
SKA3Q8IX90 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC5.68□□□□□ -1.5
SKA3Q8IX90 AL645939.3-201ENST00000435408 225 ntBASIC5.68□□□□□ -1.5
SKA3Q8IX90 AC128677.1-201ENST00000436016 442 ntBASIC5.68□□□□□ -1.5
SKA3Q8IX90 AC114814.1-201ENST00000444926 691 ntTSL 3 BASIC5.68□□□□□ -1.5
SKA3Q8IX90 MGAT2P1-201ENST00000449718 797 ntBASIC5.68□□□□□ -1.5
SKA3Q8IX90 AC078785.1-205ENST00000491578 482 ntTSL 4 BASIC5.68□□□□□ -1.5
SKA3Q8IX90 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC5.68□□□□□ -1.5
SKA3Q8IX90 AC022973.3-201ENST00000521014 467 ntTSL 5 BASIC5.68□□□□□ -1.5
SKA3Q8IX90 AL137224.1-201ENST00000527984 389 ntTSL 2 BASIC5.68□□□□□ -1.5
SKA3Q8IX90 RAB30-209ENST00000532548 644 ntTSL 3 BASIC5.68□□□□□ -1.5
SKA3Q8IX90 EBF2-204ENST00000535548 1017 ntTSL 2 BASIC5.68□□□□□ -1.5
SKA3Q8IX90 PTER-205ENST00000535784 1203 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SKA3Q8IX90 AC007207.2-201ENST00000543206 542 ntTSL 3 BASIC5.68□□□□□ -1.5
SKA3Q8IX90 AC105243.1-201ENST00000563172 1165 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SKA3Q8IX90 LINC01916-201ENST00000582028 559 ntTSL 4 BASIC5.68□□□□□ -1.5
SKA3Q8IX90 MIR212-201ENST00000586026 110 ntBASIC5.68□□□□□ -1.5
SKA3Q8IX90 AC004805.3-201ENST00000603178 310 ntBASIC5.68□□□□□ -1.5
SKA3Q8IX90 AL583832.1-201ENST00000603227 784 ntBASIC5.68□□□□□ -1.5
SKA3Q8IX90 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
SKA3Q8IX90 SMG1P5-202ENST00000529428 4219 ntBASIC5.68□□□□□ -1.5
SKA3Q8IX90 SMG1P2-201ENST00000566127 4221 ntBASIC5.68□□□□□ -1.5
SKA3Q8IX90 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC5.68□□□□□ -1.5
SKA3Q8IX90 ZNF836-201ENST00000322146 2811 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
SKA3Q8IX90 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.68□□□□□ -1.5
SKA3Q8IX90 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SKA3Q8IX90 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SKA3Q8IX90 C2CD6-201ENST00000286195 2104 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
SKA3Q8IX90 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
SKA3Q8IX90 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SKA3Q8IX90 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC5.68□□□□□ -1.5
SKA3Q8IX90 AC027575.3-201ENST00000583058 2747 ntBASIC5.68□□□□□ -1.5
SKA3Q8IX90 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SKA3Q8IX90 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC5.67□□□□□ -1.5
SKA3Q8IX90 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC5.67□□□□□ -1.5
SKA3Q8IX90 HMG20A-201ENST00000336216 4046 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SKA3Q8IX90 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SKA3Q8IX90 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC5.67□□□□□ -1.5
SKA3Q8IX90 TEX11-202ENST00000374320 2224 ntTSL 2 BASIC5.67□□□□□ -1.5
SKA3Q8IX90 SAGE3P-201ENST00000619800 1635 ntBASIC5.67□□□□□ -1.5
SKA3Q8IX90 TMEM67-205ENST00000453321 4651 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SKA3Q8IX90 RPL17-C18orf32-203ENST00000584895 1440 ntAPPRIS P1 TSL 3 BASIC5.67□□□□□ -1.5
SKA3Q8IX90 SLC2A14-203ENST00000431042 3458 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
SKA3Q8IX90 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
SKA3Q8IX90 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SKA3Q8IX90 BPIFA2-201ENST00000253362 1122 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SKA3Q8IX90 C5orf63-201ENST00000296662 966 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
SKA3Q8IX90 FAM32BP-201ENST00000344033 333 ntBASIC5.67□□□□□ -1.5
SKA3Q8IX90 STAG3L4-201ENST00000352103 530 ntBASIC5.67□□□□□ -1.5
SKA3Q8IX90 BPIFA2-202ENST00000354932 1047 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SKA3Q8IX90 SPP1-202ENST00000360804 1196 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SKA3Q8IX90 SNORD35A-201ENST00000363389 86 ntBASIC5.67□□□□□ -1.5
SKA3Q8IX90 RNU1-84P-201ENST00000365447 164 ntBASIC5.67□□□□□ -1.5
SKA3Q8IX90 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
SKA3Q8IX90 U3.23-201ENST00000391132 200 ntBASIC5.67□□□□□ -1.5
SKA3Q8IX90 AL391419.1-201ENST00000398901 1275 ntBASIC5.67□□□□□ -1.5
SKA3Q8IX90 CEACAM1-208ENST00000403461 1263 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SKA3Q8IX90 AL133268.4-201ENST00000424868 472 ntTSL 3 BASIC5.67□□□□□ -1.5
SKA3Q8IX90 MED28P4-201ENST00000433137 572 ntBASIC5.67□□□□□ -1.5
SKA3Q8IX90 BBIP1-205ENST00000436562 383 ntAPPRIS P1 TSL 3 BASIC5.67□□□□□ -1.5
SKA3Q8IX90 AL353768.1-201ENST00000439872 487 ntTSL 3 BASIC5.67□□□□□ -1.5
SKA3Q8IX90 AL445623.1-201ENST00000440888 237 ntTSL 3 BASIC5.67□□□□□ -1.5
SKA3Q8IX90 AC079763.1-201ENST00000441295 738 ntTSL 3 BASIC5.67□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 71 ms