Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AL157831.2-201ENST00000564681 3095 ntBASIC5.98□□□□□ -1.45
SOX3P41225 KCNJ1-203ENST00000392664 1674 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
SOX3P41225 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC5.98□□□□□ -1.45
SOX3P41225 MAPK10-261ENST00000641050 3109 ntBASIC5.98□□□□□ -1.45
SOX3P41225 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC5.98□□□□□ -1.45
SOX3P41225 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC5.98□□□□□ -1.45
SOX3P41225 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC5.98□□□□□ -1.45
SOX3P41225 TERB2-201ENST00000340827 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
SOX3P41225 AC003045.1-201ENST00000398779 713 ntBASIC5.98□□□□□ -1.45
SOX3P41225 AC099535.1-201ENST00000408928 371 ntBASIC5.98□□□□□ -1.45
SOX3P41225 KBTBD8-202ENST00000460576 984 ntTSL 2 BASIC5.98□□□□□ -1.45
SOX3P41225 SOX2-OT-210ENST00000487240 751 ntTSL 5 BASIC5.98□□□□□ -1.45
SOX3P41225 AC108063.1-201ENST00000513586 414 ntTSL 3 BASIC5.98□□□□□ -1.45
SOX3P41225 SUMO2P19-201ENST00000518920 295 ntBASIC5.98□□□□□ -1.45
SOX3P41225 AP005639.1-201ENST00000526939 192 ntBASIC5.98□□□□□ -1.45
SOX3P41225 AC084855.1-201ENST00000528696 572 ntTSL 2 BASIC5.98□□□□□ -1.45
SOX3P41225 OR4A41P-201ENST00000533053 928 ntBASIC5.98□□□□□ -1.45
SOX3P41225 PRH1-204ENST00000539853 837 ntAPPRIS ALT2 TSL 5 BASIC5.98□□□□□ -1.45
SOX3P41225 LINC00944-204ENST00000544499 366 ntTSL 5 BASIC5.98□□□□□ -1.45
SOX3P41225 AC099511.1-201ENST00000564561 590 ntTSL 2 BASIC5.98□□□□□ -1.45
SOX3P41225 AC040977.1-201ENST00000573222 343 ntTSL 3 BASIC5.98□□□□□ -1.45
SOX3P41225 AC010326.3-201ENST00000597780 679 ntTSL 5 BASIC5.98□□□□□ -1.45
SOX3P41225 AL122023.1-201ENST00000622847 530 ntBASIC5.98□□□□□ -1.45
SOX3P41225 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC5.98□□□□□ -1.45
SOX3P41225 LINC00598-209ENST00000635966 1148 ntTSL 5 BASIC5.98□□□□□ -1.45
SOX3P41225 LINC02495-203ENST00000636704 242 ntBASIC5.98□□□□□ -1.45
SOX3P41225 AL596275.2-207ENST00000641188 675 ntBASIC5.98□□□□□ -1.45
SOX3P41225 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC5.98□□□□□ -1.45
SOX3P41225 LINC01362-202ENST00000452901 1712 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
SOX3P41225 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC5.98□□□□□ -1.45
SOX3P41225 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
SOX3P41225 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
SOX3P41225 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
SOX3P41225 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC5.98□□□□□ -1.45
SOX3P41225 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC5.98□□□□□ -1.45
SOX3P41225 TESPA1-210ENST00000531122 1517 ntAPPRIS ALT2 TSL 2 BASIC5.98□□□□□ -1.45
SOX3P41225 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC5.98□□□□□ -1.45
SOX3P41225 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC5.98□□□□□ -1.45
SOX3P41225 SUN3-203ENST00000412142 1448 ntTSL 5 BASIC5.98□□□□□ -1.45
SOX3P41225 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC5.98□□□□□ -1.45
SOX3P41225 TTC41P-205ENST00000551270 3963 ntBASIC5.98□□□□□ -1.45
SOX3P41225 MAPK10-366ENST00000641903 2812 ntAPPRIS ALT1 BASIC5.98□□□□□ -1.45
SOX3P41225 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
SOX3P41225 RPL31P11-201ENST00000426558 1558 ntBASIC5.97□□□□□ -1.45
SOX3P41225 CPEB2-AS1-202ENST00000501916 1806 ntTSL 2 BASIC5.97□□□□□ -1.45
SOX3P41225 LINC01613-201ENST00000561476 2780 ntBASIC5.97□□□□□ -1.45
SOX3P41225 APOL6-201ENST00000409652 10121 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
SOX3P41225 ESRRG-212ENST00000463665 3359 ntTSL 2 BASIC5.97□□□□□ -1.45
SOX3P41225 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC5.97□□□□□ -1.45
SOX3P41225 SAMD3-205ENST00000457563 1877 ntTSL 2 BASIC5.97□□□□□ -1.45
SOX3P41225 TINAG-203ENST00000370869 782 ntTSL 3 BASIC5.97□□□□□ -1.45
SOX3P41225 IGLV3-16-201ENST00000390311 385 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
SOX3P41225 PSMA6P1-201ENST00000400275 741 ntBASIC5.97□□□□□ -1.45
SOX3P41225 AC116036.1-201ENST00000412199 367 ntBASIC5.97□□□□□ -1.45
SOX3P41225 AL359885.1-201ENST00000415786 903 ntBASIC5.97□□□□□ -1.45
SOX3P41225 RPL23AP18-201ENST00000416139 468 ntBASIC5.97□□□□□ -1.45
SOX3P41225 RPL23AP85-201ENST00000421838 433 ntBASIC5.97□□□□□ -1.45
SOX3P41225 AL139158.1-201ENST00000424719 340 ntBASIC5.97□□□□□ -1.45
SOX3P41225 AC097721.1-201ENST00000427150 1253 ntBASIC5.97□□□□□ -1.45
SOX3P41225 AL592146.1-201ENST00000433869 1126 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
SOX3P41225 AC003989.1-201ENST00000434569 565 ntBASIC5.97□□□□□ -1.45
SOX3P41225 CFAP58-AS1-201ENST00000435434 795 ntTSL 2 BASIC5.97□□□□□ -1.45
SOX3P41225 AC092941.2-201ENST00000444379 1008 ntTSL 3 BASIC5.97□□□□□ -1.45
SOX3P41225 AC007383.1-201ENST00000445875 636 ntBASIC5.97□□□□□ -1.45
SOX3P41225 AC211433.1-201ENST00000450426 686 ntTSL 4 BASIC5.97□□□□□ -1.45
SOX3P41225 NDUFB2-210ENST00000475276 539 ntTSL 4 BASIC5.97□□□□□ -1.45
SOX3P41225 RPS27P20-201ENST00000492051 246 ntBASIC5.97□□□□□ -1.45
SOX3P41225 AC022206.1-201ENST00000495947 347 ntBASIC5.97□□□□□ -1.45
SOX3P41225 AC106822.1-201ENST00000502647 526 ntBASIC5.97□□□□□ -1.45
SOX3P41225 AC008413.2-201ENST00000507398 342 ntTSL 3 BASIC5.97□□□□□ -1.45
SOX3P41225 APOBEC3AP1-201ENST00000511396 287 ntBASIC5.97□□□□□ -1.45
SOX3P41225 RN7SKP248-201ENST00000516278 305 ntBASIC5.97□□□□□ -1.45
SOX3P41225 AC010609.1-201ENST00000519375 569 ntTSL 3 BASIC5.97□□□□□ -1.45
SOX3P41225 TPT1-AS1-207ENST00000520310 563 ntTSL 5 BASIC5.97□□□□□ -1.45
SOX3P41225 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC5.97□□□□□ -1.45
SOX3P41225 AF235103.1-201ENST00000530223 439 ntTSL 3 BASIC5.97□□□□□ -1.45
SOX3P41225 AC084880.3-201ENST00000535921 541 ntTSL 4 BASIC5.97□□□□□ -1.45
SOX3P41225 AL355838.1-201ENST00000554814 559 ntTSL 4 BASIC5.97□□□□□ -1.45
SOX3P41225 AL359232.1-202ENST00000556874 1206 ntTSL 2 BASIC5.97□□□□□ -1.45
SOX3P41225 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC5.97□□□□□ -1.45
SOX3P41225 AL137246.2-201ENST00000613439 662 ntBASIC5.97□□□□□ -1.45
SOX3P41225 AL512356.3-201ENST00000623005 461 ntBASIC5.97□□□□□ -1.45
SOX3P41225 AC087821.1-201ENST00000623639 567 ntBASIC5.97□□□□□ -1.45
SOX3P41225 AC244205.1-201ENST00000624935 705 ntTSL 2 BASIC5.97□□□□□ -1.45
SOX3P41225 OR8G5-202ENST00000641707 1156 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
SOX3P41225 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
SOX3P41225 ACPP-202ENST00000351273 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC5.97□□□□□ -1.45
SOX3P41225 CCAT2-201ENST00000630920 1752 ntBASIC5.97□□□□□ -1.45
SOX3P41225 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
SOX3P41225 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
SOX3P41225 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
SOX3P41225 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
SOX3P41225 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
SOX3P41225 LINC01440-201ENST00000416190 1340 ntTSL 5 BASIC5.97□□□□□ -1.45
SOX3P41225 ITGB1-201ENST00000302278 3640 ntAPPRIS P2 TSL 1 (best) BASIC5.97□□□□□ -1.45
SOX3P41225 NLRC4-202ENST00000360906 3359 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
SOX3P41225 CYP3A5-201ENST00000222982 1720 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
SOX3P41225 DTNA-228ENST00000597674 1732 ntTSL 1 (best) BASIC5.96□□□□□ -1.45
SOX3P41225 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
SOX3P41225 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC5.96□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms