Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 USP50-203ENST00000532404 1386 ntAPPRIS P2 TSL 5 BASIC7.43□□□□□ -1.22
BRCA1P38398 AL355377.1-201ENST00000621125 1653 ntBASIC7.43□□□□□ -1.22
BRCA1P38398 RUNX1T1-250ENST00000614812 7483 ntAPPRIS P3 TSL 5 BASIC7.43□□□□□ -1.22
BRCA1P38398 ZHX3-211ENST00000544979 3933 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
BRCA1P38398 ELOCP3-201ENST00000439303 348 ntBASIC7.43□□□□□ -1.22
BRCA1P38398 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC7.43□□□□□ -1.22
BRCA1P38398 AC009237.1-201ENST00000442127 744 ntBASIC7.43□□□□□ -1.22
BRCA1P38398 RPL35AP28-201ENST00000459730 331 ntBASIC7.43□□□□□ -1.22
BRCA1P38398 AC108161.1-201ENST00000461060 402 ntBASIC7.43□□□□□ -1.22
BRCA1P38398 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC7.43□□□□□ -1.22
BRCA1P38398 FTH1P2-201ENST00000466086 412 ntBASIC7.43□□□□□ -1.22
BRCA1P38398 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC7.43□□□□□ -1.22
BRCA1P38398 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC7.43□□□□□ -1.22
BRCA1P38398 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC7.43□□□□□ -1.22
BRCA1P38398 AC005840.5-201ENST00000619166 599 ntBASIC7.43□□□□□ -1.22
BRCA1P38398 AFAP1-AS1-201ENST00000608442 6795 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
BRCA1P38398 FBXO43-201ENST00000428847 2886 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
BRCA1P38398 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC7.42□□□□□ -1.22
BRCA1P38398 CYB5B-201ENST00000307892 4286 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
BRCA1P38398 ITSN2-202ENST00000361999 5814 ntAPPRIS ALT2 TSL 1 (best) BASIC7.42□□□□□ -1.22
BRCA1P38398 NUP98-202ENST00000355260 5628 ntTSL 5 BASIC7.42□□□□□ -1.22
BRCA1P38398 NCKAP5-203ENST00000405974 3636 ntAPPRIS ALT2 TSL 5 BASIC7.42□□□□□ -1.22
BRCA1P38398 CELF2-209ENST00000631460 5538 ntTSL 5 BASIC7.42□□□□□ -1.22
BRCA1P38398 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC7.42□□□□□ -1.22
BRCA1P38398 AL096829.1-201ENST00000413677 457 ntBASIC7.42□□□□□ -1.22
BRCA1P38398 AC005033.1-201ENST00000428904 813 ntBASIC7.42□□□□□ -1.22
BRCA1P38398 MINCR-206ENST00000524335 499 ntTSL 2 BASIC7.42□□□□□ -1.22
BRCA1P38398 HIGD1AP5-201ENST00000529959 259 ntBASIC7.42□□□□□ -1.22
BRCA1P38398 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC7.42□□□□□ -1.22
BRCA1P38398 MIR8080-201ENST00000622224 89 ntBASIC7.42□□□□□ -1.22
BRCA1P38398 AC073342.3-201ENST00000624211 193 ntBASIC7.42□□□□□ -1.22
BRCA1P38398 HYAL4-202ENST00000476325 1616 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
BRCA1P38398 COX7B-203ENST00000481445 2471 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
BRCA1P38398 AC025809.2-201ENST00000625085 1802 ntBASIC7.42□□□□□ -1.22
BRCA1P38398 RNF41-212ENST00000615206 5216 ntAPPRIS P1 TSL 5 BASIC7.42□□□□□ -1.22
BRCA1P38398 SLFN14-201ENST00000415846 2889 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
BRCA1P38398 CASC19-248ENST00000641674 1356 ntBASIC7.42□□□□□ -1.22
BRCA1P38398 LPIN1-207ENST00000425416 5582 ntTSL 2 BASIC7.41□□□□□ -1.22
BRCA1P38398 LYRM7-201ENST00000379380 6351 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
BRCA1P38398 CMAHP-202ENST00000377993 1681 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
BRCA1P38398 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC7.41□□□□□ -1.22
BRCA1P38398 NUTM2B-AS1-212ENST00000610681 4241 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
BRCA1P38398 MIR550A3-201ENST00000390735 95 ntBASIC7.41□□□□□ -1.22
BRCA1P38398 MRM2-202ENST00000407040 582 ntTSL 3 BASIC7.41□□□□□ -1.22
BRCA1P38398 GABARAPL3-201ENST00000412799 354 ntBASIC7.41□□□□□ -1.22
BRCA1P38398 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC7.41□□□□□ -1.22
BRCA1P38398 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC7.41□□□□□ -1.22
BRCA1P38398 AC091390.2-201ENST00000432573 374 ntBASIC7.41□□□□□ -1.22
BRCA1P38398 TPTE2P1-203ENST00000434100 514 ntTSL 3 BASIC7.41□□□□□ -1.22
BRCA1P38398 RPL12P3-201ENST00000440080 396 ntBASIC7.41□□□□□ -1.22
BRCA1P38398 LRRC37A14P-201ENST00000452297 462 ntBASIC7.41□□□□□ -1.22
BRCA1P38398 AC109481.1-201ENST00000509173 282 ntBASIC7.41□□□□□ -1.22
BRCA1P38398 AC253576.1-201ENST00000511645 1156 ntBASIC7.41□□□□□ -1.22
BRCA1P38398 RN7SL708P-201ENST00000580952 299 ntBASIC7.41□□□□□ -1.22
BRCA1P38398 SETP3-201ENST00000581726 813 ntBASIC7.41□□□□□ -1.22
BRCA1P38398 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC7.41□□□□□ -1.22
BRCA1P38398 KCNMA1-AS1-204ENST00000595702 504 ntTSL 5 BASIC7.41□□□□□ -1.22
BRCA1P38398 LAPTM4BP2-201ENST00000604542 446 ntBASIC7.41□□□□□ -1.22
BRCA1P38398 AL121612.2-201ENST00000612261 482 ntBASIC7.41□□□□□ -1.22
BRCA1P38398 METTL15-211ENST00000634762 718 ntTSL 5 BASIC7.41□□□□□ -1.22
BRCA1P38398 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC7.41□□□□□ -1.22
BRCA1P38398 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
BRCA1P38398 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC7.41□□□□□ -1.22
BRCA1P38398 ERG-203ENST00000398905 4806 ntAPPRIS ALT2 TSL 1 (best) BASIC7.41□□□□□ -1.22
BRCA1P38398 RPGRIP1L-206ENST00000564374 3877 ntTSL 2 BASIC7.41□□□□□ -1.22
BRCA1P38398 AC062029.1-202ENST00000606164 3651 ntBASIC7.41□□□□□ -1.22
BRCA1P38398 LRRC37A17P-201ENST00000570311 4693 ntBASIC7.41□□□□□ -1.22
BRCA1P38398 GAPVD1-215ENST00000470056 8923 ntTSL 5 BASIC7.41□□□□□ -1.22
BRCA1P38398 IL1RAP-213ENST00000447382 4769 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
BRCA1P38398 AC107983.2-201ENST00000425211 4735 ntTSL 2 BASIC7.41□□□□□ -1.22
BRCA1P38398 NLGN1-202ENST00000401917 1827 ntTSL 5 BASIC7.41□□□□□ -1.22
BRCA1P38398 TRIM34-204ENST00000514226 2493 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
BRCA1P38398 VPS8-207ENST00000436792 5011 ntAPPRIS ALT1 TSL 2 BASIC7.41□□□□□ -1.22
BRCA1P38398 RNU105B-201ENST00000364478 208 ntBASIC7.41□□□□□ -1.22
BRCA1P38398 MIR541-201ENST00000401360 84 ntBASIC7.41□□□□□ -1.22
BRCA1P38398 BRD8-204ENST00000411594 2967 ntTSL 5 BASIC7.41□□□□□ -1.22
BRCA1P38398 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC7.41□□□□□ -1.22
BRCA1P38398 AL022331.1-201ENST00000429025 477 ntBASIC7.41□□□□□ -1.22
BRCA1P38398 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC7.41□□□□□ -1.22
BRCA1P38398 FTH1P20-201ENST00000434913 548 ntBASIC7.41□□□□□ -1.22
BRCA1P38398 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC7.41□□□□□ -1.22
BRCA1P38398 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC7.41□□□□□ -1.22
BRCA1P38398 MIR3691-201ENST00000578066 90 ntBASIC7.41□□□□□ -1.22
BRCA1P38398 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC7.41□□□□□ -1.22
BRCA1P38398 AL359513.1-201ENST00000614364 557 ntBASIC7.41□□□□□ -1.22
BRCA1P38398 NRP1-207ENST00000374875 5407 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
BRCA1P38398 HYDIN-215ENST00000541601 3058 ntAPPRIS ALT2 TSL 2 BASIC7.4□□□□□ -1.22
BRCA1P38398 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC7.4□□□□□ -1.22
BRCA1P38398 LRBA-209ENST00000510413 10032 ntAPPRIS ALT2 TSL 1 (best) BASIC7.4□□□□□ -1.22
BRCA1P38398 CTAGE1-201ENST00000391403 4313 ntAPPRIS P2 BASIC7.4□□□□□ -1.22
BRCA1P38398 TRIM49B-202ENST00000622138 2162 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
BRCA1P38398 ADAM5-208ENST00000505455 1998 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
BRCA1P38398 TLN2-211ENST00000636159 7441 ntTSL 5 BASIC7.4□□□□□ -1.22
BRCA1P38398 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC7.4□□□□□ -1.22
BRCA1P38398 ZNF605-202ENST00000360187 9340 ntAPPRIS P3 TSL 1 (best) BASIC7.4□□□□□ -1.22
BRCA1P38398 ZNF268-213ENST00000542986 3773 ntTSL 5 BASIC7.4□□□□□ -1.22
BRCA1P38398 PRDM2-203ENST00000343137 5797 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
BRCA1P38398 TMCC3-203ENST00000551457 4361 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
BRCA1P38398 BCL2L14-201ENST00000266434 2039 ntTSL 1 (best) BASIC7.4□□□□□ -1.23
BRCA1P38398 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 67 ms