Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC090115.2-201ENST00000548060 883 ntBASIC5.59□□□□□ -1.51
NKX3-1Q99801 CBX5-204ENST00000550411 894 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
NKX3-1Q99801 AP003115.1-201ENST00000569849 463 ntBASIC5.59□□□□□ -1.51
NKX3-1Q99801 RN7SL66P-201ENST00000582099 264 ntBASIC5.59□□□□□ -1.51
NKX3-1Q99801 AC016383.1-201ENST00000582700 714 ntTSL 3 BASIC5.59□□□□□ -1.51
NKX3-1Q99801 AC005479.3-201ENST00000602790 431 ntBASIC5.59□□□□□ -1.51
NKX3-1Q99801 AC025171.4-201ENST00000607250 1047 ntBASIC5.59□□□□□ -1.51
NKX3-1Q99801 AC244100.4-201ENST00000617747 388 ntBASIC5.59□□□□□ -1.51
NKX3-1Q99801 CCL15-204ENST00000617897 1073 ntAPPRIS P2 TSL 1 (best) BASIC5.59□□□□□ -1.51
NKX3-1Q99801 AC048341.3-201ENST00000619323 491 ntBASIC5.59□□□□□ -1.51
NKX3-1Q99801 CT45A6-202ENST00000620654 878 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
NKX3-1Q99801 AC243960.7-201ENST00000623532 707 ntBASIC5.59□□□□□ -1.51
NKX3-1Q99801 LINC01440-210ENST00000629744 541 ntTSL 5 BASIC5.59□□□□□ -1.51
NKX3-1Q99801 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
NKX3-1Q99801 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
NKX3-1Q99801 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC5.59□□□□□ -1.51
NKX3-1Q99801 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
NKX3-1Q99801 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC5.59□□□□□ -1.51
NKX3-1Q99801 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
NKX3-1Q99801 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC5.59□□□□□ -1.52
NKX3-1Q99801 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC5.59□□□□□ -1.52
NKX3-1Q99801 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
NKX3-1Q99801 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC5.59□□□□□ -1.52
NKX3-1Q99801 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
NKX3-1Q99801 CD53-201ENST00000271324 1505 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
NKX3-1Q99801 MTCO1P8-201ENST00000416914 1523 ntBASIC5.58□□□□□ -1.52
NKX3-1Q99801 TMCC1P1-201ENST00000518897 1980 ntBASIC5.58□□□□□ -1.52
NKX3-1Q99801 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
NKX3-1Q99801 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
NKX3-1Q99801 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
NKX3-1Q99801 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
NKX3-1Q99801 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
NKX3-1Q99801 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
NKX3-1Q99801 LINC01205-201ENST00000489670 1331 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
NKX3-1Q99801 AL359976.1-201ENST00000418655 3528 ntBASIC5.58□□□□□ -1.52
NKX3-1Q99801 CYP3A5-201ENST00000222982 1720 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
NKX3-1Q99801 CLEC9A-201ENST00000355819 1734 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
NKX3-1Q99801 SCG5-201ENST00000300175 1238 ntAPPRIS P4 TSL 1 (best) BASIC5.58□□□□□ -1.52
NKX3-1Q99801 RN7SKP184-201ENST00000362348 333 ntBASIC5.58□□□□□ -1.52
NKX3-1Q99801 TINAG-202ENST00000370864 692 ntTSL 2 BASIC5.58□□□□□ -1.52
NKX3-1Q99801 ASPH-204ENST00000389204 1290 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
NKX3-1Q99801 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
NKX3-1Q99801 RPL5P20-201ENST00000403848 896 ntBASIC5.58□□□□□ -1.52
NKX3-1Q99801 RPL12P23-201ENST00000405880 490 ntBASIC5.58□□□□□ -1.52
NKX3-1Q99801 MRPL35-203ENST00000409180 651 ntAPPRIS ALT1 TSL 3 BASIC5.58□□□□□ -1.52
NKX3-1Q99801 AC116036.1-201ENST00000412199 367 ntBASIC5.58□□□□□ -1.52
NKX3-1Q99801 AC105275.1-201ENST00000417794 491 ntTSL 3 BASIC5.58□□□□□ -1.52
NKX3-1Q99801 SPATA20P1-201ENST00000423089 438 ntBASIC5.58□□□□□ -1.52
NKX3-1Q99801 ETF1P1-206ENST00000427296 984 ntBASIC5.58□□□□□ -1.52
NKX3-1Q99801 AC092967.1-201ENST00000449016 481 ntBASIC5.58□□□□□ -1.52
NKX3-1Q99801 AC211433.1-201ENST00000450426 686 ntTSL 4 BASIC5.58□□□□□ -1.52
NKX3-1Q99801 RPS4XP17-201ENST00000479057 754 ntBASIC5.58□□□□□ -1.52
NKX3-1Q99801 SNORA48.9-201ENST00000516419 162 ntBASIC5.58□□□□□ -1.52
NKX3-1Q99801 RPL27A-210ENST00000531978 867 ntTSL 2 BASIC5.58□□□□□ -1.52
NKX3-1Q99801 LINC02454-201ENST00000539116 589 ntTSL 4 BASIC5.58□□□□□ -1.52
NKX3-1Q99801 CTNNA3-205ENST00000545309 555 ntTSL 5 BASIC5.58□□□□□ -1.52
NKX3-1Q99801 AL138974.1-201ENST00000551227 741 ntTSL 5 BASIC5.58□□□□□ -1.52
NKX3-1Q99801 C15orf41-204ENST00000562877 764 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
NKX3-1Q99801 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC5.58□□□□□ -1.52
NKX3-1Q99801 C5orf63-208ENST00000607731 478 ntTSL 5 BASIC5.58□□□□□ -1.52
NKX3-1Q99801 AC063952.1-203ENST00000634410 658 ntBASIC5.58□□□□□ -1.52
NKX3-1Q99801 LINC00598-209ENST00000635966 1148 ntTSL 5 BASIC5.58□□□□□ -1.52
NKX3-1Q99801 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC5.58□□□□□ -1.52
NKX3-1Q99801 AC095038.1-201ENST00000429248 1591 ntBASIC5.58□□□□□ -1.52
NKX3-1Q99801 ZNF610-202ENST00000327920 1855 ntAPPRIS P3 TSL 2 BASIC5.58□□□□□ -1.52
NKX3-1Q99801 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
NKX3-1Q99801 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
NKX3-1Q99801 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC5.58□□□□□ -1.52
NKX3-1Q99801 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
NKX3-1Q99801 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC5.57□□□□□ -1.52
NKX3-1Q99801 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
NKX3-1Q99801 LRRC37A15P-201ENST00000514785 1355 ntBASIC5.57□□□□□ -1.52
NKX3-1Q99801 TC2N-202ENST00000360594 3751 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
NKX3-1Q99801 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC5.57□□□□□ -1.52
NKX3-1Q99801 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC5.57□□□□□ -1.52
NKX3-1Q99801 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
NKX3-1Q99801 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC5.57□□□□□ -1.52
NKX3-1Q99801 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC5.57□□□□□ -1.52
NKX3-1Q99801 ATF3-201ENST00000336937 482 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
NKX3-1Q99801 RNA5SP350-201ENST00000363298 111 ntBASIC5.57□□□□□ -1.52
NKX3-1Q99801 RN7SKP130-201ENST00000364924 301 ntBASIC5.57□□□□□ -1.52
NKX3-1Q99801 RNA5SP152-201ENST00000365184 110 ntBASIC5.57□□□□□ -1.52
NKX3-1Q99801 UBBP1-201ENST00000392399 473 ntBASIC5.57□□□□□ -1.52
NKX3-1Q99801 AL050335.1-201ENST00000396909 869 ntBASIC5.57□□□□□ -1.52
NKX3-1Q99801 U3.43-201ENST00000410734 213 ntBASIC5.57□□□□□ -1.52
NKX3-1Q99801 C9orf147-201ENST00000412934 584 ntTSL 3 BASIC5.57□□□□□ -1.52
NKX3-1Q99801 TMA16P2-201ENST00000413187 601 ntBASIC5.57□□□□□ -1.52
NKX3-1Q99801 AP006748.1-201ENST00000418874 346 ntTSL 3 BASIC5.57□□□□□ -1.52
NKX3-1Q99801 LINC01762-201ENST00000423907 454 ntTSL 5 BASIC5.57□□□□□ -1.52
NKX3-1Q99801 ZNF880-203ENST00000424032 558 ntTSL 4 BASIC5.57□□□□□ -1.52
NKX3-1Q99801 AC016766.1-201ENST00000429636 714 ntTSL 3 BASIC5.57□□□□□ -1.52
NKX3-1Q99801 RPS10P21-201ENST00000430654 475 ntBASIC5.57□□□□□ -1.52
NKX3-1Q99801 ARL4AP4-201ENST00000434170 518 ntBASIC5.57□□□□□ -1.52
NKX3-1Q99801 AL035701.1-202ENST00000437249 371 ntTSL 3 BASIC5.57□□□□□ -1.52
NKX3-1Q99801 AC083855.1-201ENST00000440041 258 ntBASIC5.57□□□□□ -1.52
NKX3-1Q99801 AC004470.1-201ENST00000442155 382 ntTSL 5 BASIC5.57□□□□□ -1.52
NKX3-1Q99801 AL133319.1-201ENST00000447848 777 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
NKX3-1Q99801 SPANXB1-201ENST00000449283 469 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
NKX3-1Q99801 MGAT2P1-201ENST00000449718 797 ntBASIC5.57□□□□□ -1.52
NKX3-1Q99801 AC128716.1-201ENST00000475129 166 ntBASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 136.2 ms