Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC7.61□□□□□ -1.19
LIG3P49916 DKK2-202ENST00000510463 908 ntTSL 3 BASIC7.61□□□□□ -1.19
LIG3P49916 AC017007.5-201ENST00000511590 874 ntTSL 2 BASIC7.61□□□□□ -1.19
LIG3P49916 MRPS33P3-201ENST00000513456 322 ntBASIC7.61□□□□□ -1.19
LIG3P49916 LINC01618-201ENST00000514957 727 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
LIG3P49916 NDUFS5P6-201ENST00000529136 295 ntBASIC7.61□□□□□ -1.19
LIG3P49916 REG4-204ENST00000530654 612 ntTSL 5 BASIC7.61□□□□□ -1.19
LIG3P49916 AP002004.1-206ENST00000532441 876 ntBASIC7.61□□□□□ -1.19
LIG3P49916 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC7.61□□□□□ -1.19
LIG3P49916 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC7.61□□□□□ -1.19
LIG3P49916 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
LIG3P49916 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC7.61□□□□□ -1.19
LIG3P49916 AC027667.1-201ENST00000545814 304 ntBASIC7.61□□□□□ -1.19
LIG3P49916 AC073571.1-201ENST00000549103 475 ntTSL 3 BASIC7.61□□□□□ -1.19
LIG3P49916 LYZ-203ENST00000549690 669 ntTSL 2 BASIC7.61□□□□□ -1.19
LIG3P49916 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC7.61□□□□□ -1.19
LIG3P49916 AL049830.4-201ENST00000555149 351 ntBASIC7.61□□□□□ -1.19
LIG3P49916 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC7.61□□□□□ -1.19
LIG3P49916 INO80-AS1-202ENST00000560178 444 ntTSL 3 BASIC7.61□□□□□ -1.19
LIG3P49916 AC243312.1-201ENST00000570582 275 ntBASIC7.61□□□□□ -1.19
LIG3P49916 AP005136.1-201ENST00000579765 429 ntBASIC7.61□□□□□ -1.19
LIG3P49916 AC021506.1-201ENST00000581971 597 ntTSL 5 BASIC7.61□□□□□ -1.19
LIG3P49916 MIR4786-201ENST00000583954 80 ntBASIC7.61□□□□□ -1.19
LIG3P49916 LINC01837-204ENST00000593211 570 ntTSL 4 BASIC7.61□□□□□ -1.19
LIG3P49916 ANKRD20A19P-203ENST00000602724 295 ntBASIC7.61□□□□□ -1.19
LIG3P49916 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC7.61□□□□□ -1.19
LIG3P49916 AL109936.2-201ENST00000605350 650 ntBASIC7.61□□□□□ -1.19
LIG3P49916 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC7.61□□□□□ -1.19
LIG3P49916 MIR7162-201ENST00000611134 69 ntBASIC7.61□□□□□ -1.19
LIG3P49916 SLC14A1-221ENST00000619403 3823 ntTSL 5 BASIC7.61□□□□□ -1.19
LIG3P49916 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC7.61□□□□□ -1.19
LIG3P49916 CR392039.3-201ENST00000623236 227 ntTSL 5 BASIC7.61□□□□□ -1.19
LIG3P49916 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC7.61□□□□□ -1.19
LIG3P49916 AC119674.1-209ENST00000642031 997 ntBASIC7.61□□□□□ -1.19
LIG3P49916 ALPK2-201ENST00000361673 7303 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
LIG3P49916 ASNS-214ENST00000455086 1588 ntTSL 2 BASIC7.61□□□□□ -1.19
LIG3P49916 CXCR4-202ENST00000409817 1895 ntAPPRIS P3 BASIC7.61□□□□□ -1.19
LIG3P49916 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC7.61□□□□□ -1.19
LIG3P49916 SLC39A12-204ENST00000539911 2461 ntTSL 2 BASIC7.61□□□□□ -1.19
LIG3P49916 AMOT-203ENST00000371959 7319 ntAPPRIS ALT2 TSL 1 (best) BASIC7.61□□□□□ -1.19
LIG3P49916 GRIA3-204ENST00000541091 2740 ntAPPRIS P5 TSL 1 (best) BASIC7.61□□□□□ -1.19
LIG3P49916 SYNPO2-206ENST00000610556 3934 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
LIG3P49916 CU638689.4-201ENST00000623047 5990 ntTSL 5 BASIC7.61□□□□□ -1.19
LIG3P49916 LINC01697-202ENST00000426534 1764 ntTSL 2 BASIC7.61□□□□□ -1.19
LIG3P49916 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
LIG3P49916 EPHA3-201ENST00000336596 5809 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
LIG3P49916 BVES-AS1-202ENST00000369122 1716 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
LIG3P49916 UNC80-201ENST00000272845 13440 ntTSL 5 BASIC7.61□□□□□ -1.19
LIG3P49916 PSG6-204ENST00000402603 1412 ntTSL 5 BASIC7.61□□□□□ -1.19
LIG3P49916 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
LIG3P49916 DPPA4-201ENST00000335658 2817 ntAPPRIS P2 TSL 1 (best) BASIC7.6□□□□□ -1.19
LIG3P49916 CS-212ENST00000548567 3057 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
LIG3P49916 CACNB4-219ENST00000636108 1698 ntTSL 5 BASIC7.6□□□□□ -1.19
LIG3P49916 RIPOR2-207ENST00000540914 3614 ntTSL 2 BASIC7.6□□□□□ -1.19
LIG3P49916 AC100810.3-201ENST00000633189 2240 ntBASIC7.6□□□□□ -1.19
LIG3P49916 AL023495.1-201ENST00000413005 1923 ntTSL 2 BASIC7.6□□□□□ -1.19
LIG3P49916 NRXN1-248ENST00000636345 3595 ntTSL 5 BASIC7.6□□□□□ -1.19
LIG3P49916 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
LIG3P49916 FKTN-202ENST00000357998 2404 ntTSL 5 BASIC7.6□□□□□ -1.19
LIG3P49916 AL669831.5-218ENST00000591702 1873 ntBASIC7.6□□□□□ -1.19
LIG3P49916 GOT2P1-201ENST00000440922 1309 ntBASIC7.6□□□□□ -1.19
LIG3P49916 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC7.6□□□□□ -1.19
LIG3P49916 UNC13B-210ENST00000636694 8012 ntTSL 5 BASIC7.6□□□□□ -1.19
LIG3P49916 RNU6-236P-201ENST00000363886 106 ntBASIC7.6□□□□□ -1.19
LIG3P49916 RGS8-203ENST00000367557 859 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
LIG3P49916 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC7.6□□□□□ -1.19
LIG3P49916 SNORD116-9-201ENST00000384000 95 ntBASIC7.6□□□□□ -1.19
LIG3P49916 SNORD116-3-201ENST00000384287 95 ntBASIC7.6□□□□□ -1.19
LIG3P49916 SNORD116-7-201ENST00000384404 95 ntBASIC7.6□□□□□ -1.19
LIG3P49916 SNORD116-5-201ENST00000384462 95 ntBASIC7.6□□□□□ -1.19
LIG3P49916 MIR301B-201ENST00000390813 78 ntBASIC7.6□□□□□ -1.19
LIG3P49916 RN7SKP207-201ENST00000411204 303 ntBASIC7.6□□□□□ -1.19
LIG3P49916 AC006547.2-201ENST00000412713 526 ntTSL 4 BASIC7.6□□□□□ -1.19
LIG3P49916 AC004986.1-201ENST00000414855 607 ntBASIC7.6□□□□□ -1.19
LIG3P49916 AL008987.1-201ENST00000415528 237 ntBASIC7.6□□□□□ -1.19
LIG3P49916 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC7.6□□□□□ -1.19
LIG3P49916 RAC1P4-201ENST00000419413 579 ntBASIC7.6□□□□□ -1.19
LIG3P49916 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC7.6□□□□□ -1.19
LIG3P49916 AC093107.1-201ENST00000422772 609 ntBASIC7.6□□□□□ -1.19
LIG3P49916 AL513329.1-201ENST00000426575 657 ntTSL 3 BASIC7.6□□□□□ -1.19
LIG3P49916 MAGEC3-203ENST00000443323 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC7.6□□□□□ -1.19
LIG3P49916 AL031736.1-201ENST00000449688 618 ntBASIC7.6□□□□□ -1.19
LIG3P49916 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC7.6□□□□□ -1.19
LIG3P49916 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC7.6□□□□□ -1.19
LIG3P49916 AC234771.3-201ENST00000454984 622 ntBASIC7.6□□□□□ -1.19
LIG3P49916 AC139713.1-202ENST00000512366 460 ntBASIC7.6□□□□□ -1.19
LIG3P49916 TPT1-AS1-213ENST00000521336 759 ntTSL 5 BASIC7.6□□□□□ -1.19
LIG3P49916 OR4A2P-201ENST00000527276 913 ntBASIC7.6□□□□□ -1.19
LIG3P49916 LINC00964-204ENST00000528090 572 ntTSL 4 BASIC7.6□□□□□ -1.19
LIG3P49916 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC7.6□□□□□ -1.19
LIG3P49916 AC115676.1-201ENST00000538416 329 ntTSL 3 BASIC7.6□□□□□ -1.19
LIG3P49916 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC7.6□□□□□ -1.19
LIG3P49916 APEX1-214ENST00000557054 888 ntTSL 5 BASIC7.6□□□□□ -1.19
LIG3P49916 AC007346.1-201ENST00000569208 867 ntBASIC7.6□□□□□ -1.19
LIG3P49916 MIR4789-201ENST00000577469 82 ntBASIC7.6□□□□□ -1.19
LIG3P49916 MIR4685-201ENST00000578185 69 ntBASIC7.6□□□□□ -1.19
LIG3P49916 IGLJCOR18-201ENST00000584002 424 ntBASIC7.6□□□□□ -1.19
LIG3P49916 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC7.6□□□□□ -1.19
LIG3P49916 IZUMO3-203ENST00000604921 743 ntAPPRIS P2 TSL 5 BASIC7.6□□□□□ -1.19
LIG3P49916 AC026124.2-201ENST00000621847 656 ntBASIC7.6□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 139.8 ms