Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC5.46□□□□□ -1.54
HOXA1P49639 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
HOXA1P49639 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
HOXA1P49639 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
HOXA1P49639 FOPNL-201ENST00000255759 2275 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
HOXA1P49639 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
HOXA1P49639 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC5.45□□□□□ -1.54
HOXA1P49639 TBC1D19-205ENST00000511789 1386 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
HOXA1P49639 HSP90AA2P-201ENST00000530115 2196 ntBASIC5.45□□□□□ -1.54
HOXA1P49639 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC5.45□□□□□ -1.54
HOXA1P49639 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.45□□□□□ -1.54
HOXA1P49639 RPL24P4-201ENST00000326586 421 ntBASIC5.45□□□□□ -1.54
HOXA1P49639 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC5.45□□□□□ -1.54
HOXA1P49639 RAET1G-201ENST00000367360 1107 ntAPPRIS P2 TSL 1 (best) BASIC5.45□□□□□ -1.54
HOXA1P49639 S100A5-202ENST00000368718 710 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
HOXA1P49639 RPL23AP17-201ENST00000401064 499 ntBASIC5.45□□□□□ -1.54
HOXA1P49639 AL607077.1-201ENST00000401718 499 ntBASIC5.45□□□□□ -1.54
HOXA1P49639 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC5.45□□□□□ -1.54
HOXA1P49639 TYMSP1-201ENST00000407851 869 ntBASIC5.45□□□□□ -1.54
HOXA1P49639 RNA5SP115-201ENST00000411160 107 ntBASIC5.45□□□□□ -1.54
HOXA1P49639 MKX-AS1-201ENST00000412244 745 ntTSL 3 BASIC5.45□□□□□ -1.54
HOXA1P49639 TMA16P2-201ENST00000413187 601 ntBASIC5.45□□□□□ -1.54
HOXA1P49639 AC023141.1-201ENST00000419418 379 ntBASIC5.45□□□□□ -1.54
HOXA1P49639 ELMO1-AS1-201ENST00000419535 528 ntTSL 4 BASIC5.45□□□□□ -1.54
HOXA1P49639 AL596451.1-201ENST00000419824 572 ntTSL 5 BASIC5.45□□□□□ -1.54
HOXA1P49639 AC013410.2-201ENST00000422627 201 ntBASIC5.45□□□□□ -1.54
HOXA1P49639 OR13C7-201ENST00000424348 959 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
HOXA1P49639 AL353148.1-202ENST00000424701 551 ntTSL 2 BASIC5.45□□□□□ -1.54
HOXA1P49639 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC5.45□□□□□ -1.54
HOXA1P49639 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC5.45□□□□□ -1.54
HOXA1P49639 AC105393.2-201ENST00000431911 549 ntTSL 4 BASIC5.45□□□□□ -1.54
HOXA1P49639 AC245452.2-201ENST00000435222 392 ntBASIC5.45□□□□□ -1.54
HOXA1P49639 MYL6P3-201ENST00000436904 432 ntBASIC5.45□□□□□ -1.54
HOXA1P49639 FGF13-AS1-201ENST00000438238 849 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
HOXA1P49639 SDR42E1P3-201ENST00000438345 502 ntBASIC5.45□□□□□ -1.54
HOXA1P49639 SEPHS1P4-201ENST00000446112 1176 ntBASIC5.45□□□□□ -1.54
HOXA1P49639 HMGN1P8-201ENST00000463578 288 ntBASIC5.45□□□□□ -1.54
HOXA1P49639 RN7SL561P-201ENST00000488553 281 ntBASIC5.45□□□□□ -1.54
HOXA1P49639 RNU6-467P-201ENST00000517027 110 ntBASIC5.45□□□□□ -1.54
HOXA1P49639 AC019227.1-201ENST00000526902 510 ntBASIC5.45□□□□□ -1.54
HOXA1P49639 AC108136.1-201ENST00000530350 631 ntTSL 5 BASIC5.45□□□□□ -1.54
HOXA1P49639 AC027026.1-201ENST00000532323 742 ntBASIC5.45□□□□□ -1.54
HOXA1P49639 AC009063.2-201ENST00000563981 906 ntTSL 3 BASIC5.45□□□□□ -1.54
HOXA1P49639 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC5.45□□□□□ -1.54
HOXA1P49639 AC009303.2-206ENST00000588042 786 ntTSL 5 BASIC5.45□□□□□ -1.54
HOXA1P49639 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC5.45□□□□□ -1.54
HOXA1P49639 AC006116.6-201ENST00000593258 1103 ntBASIC5.45□□□□□ -1.54
HOXA1P49639 AC144521.1-201ENST00000607148 956 ntBASIC5.45□□□□□ -1.54
HOXA1P49639 FAM13A-AS1_2.1-201ENST00000611121 108 ntBASIC5.45□□□□□ -1.54
HOXA1P49639 5S_rRNA.23-201ENST00000612086 102 ntBASIC5.45□□□□□ -1.54
HOXA1P49639 uc_338.33-201ENST00000614988 170 ntBASIC5.45□□□□□ -1.54
HOXA1P49639 IL13-206ENST00000617259 498 ntAPPRIS ALT2 TSL 5 BASIC5.45□□□□□ -1.54
HOXA1P49639 AL161420.1-201ENST00000619393 264 ntBASIC5.45□□□□□ -1.54
HOXA1P49639 FO681491.1-202ENST00000623392 737 ntBASIC5.45□□□□□ -1.54
HOXA1P49639 AC080188.3-201ENST00000624842 748 ntBASIC5.45□□□□□ -1.54
HOXA1P49639 LINC01125-249ENST00000627399 1067 ntAPPRIS P5 TSL 5 BASIC5.45□□□□□ -1.54
HOXA1P49639 ACAA2-206ENST00000589432 1840 ntTSL 5 BASIC5.45□□□□□ -1.54
HOXA1P49639 OR51C1P-202ENST00000641159 1444 ntBASIC5.45□□□□□ -1.54
HOXA1P49639 AL157831.2-201ENST00000564681 3095 ntBASIC5.45□□□□□ -1.54
HOXA1P49639 ADAM24P-201ENST00000398655 2101 ntBASIC5.45□□□□□ -1.54
HOXA1P49639 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC5.45□□□□□ -1.54
HOXA1P49639 AC120036.2-201ENST00000509729 1474 ntBASIC5.45□□□□□ -1.54
HOXA1P49639 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC5.44□□□□□ -1.54
HOXA1P49639 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
HOXA1P49639 OR9K1P-202ENST00000641111 3217 ntBASIC5.44□□□□□ -1.54
HOXA1P49639 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC5.44□□□□□ -1.54
HOXA1P49639 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
HOXA1P49639 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC5.44□□□□□ -1.54
HOXA1P49639 RGS2-201ENST00000235382 1354 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
HOXA1P49639 AC090774.4-201ENST00000578888 1372 ntBASIC5.44□□□□□ -1.54
HOXA1P49639 AF064860.2-201ENST00000457325 1542 ntTSL 3 BASIC5.44□□□□□ -1.54
HOXA1P49639 ZC3H8-208ENST00000615791 1527 ntAPPRIS ALT2 TSL 5 BASIC5.44□□□□□ -1.54
HOXA1P49639 AC007012.2-201ENST00000623206 1676 ntBASIC5.44□□□□□ -1.54
HOXA1P49639 DLEU2L-201ENST00000371086 3555 ntBASIC5.44□□□□□ -1.54
HOXA1P49639 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
HOXA1P49639 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
HOXA1P49639 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC5.44□□□□□ -1.54
HOXA1P49639 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
HOXA1P49639 EI24P3-201ENST00000399046 1062 ntBASIC5.44□□□□□ -1.54
HOXA1P49639 CYCSP17-201ENST00000407870 315 ntBASIC5.44□□□□□ -1.54
HOXA1P49639 AL157932.1-201ENST00000413246 363 ntTSL 3 BASIC5.44□□□□□ -1.54
HOXA1P49639 AL713923.1-201ENST00000414071 378 ntTSL 5 BASIC5.44□□□□□ -1.54
HOXA1P49639 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC5.44□□□□□ -1.54
HOXA1P49639 AL663061.1-201ENST00000416625 580 ntBASIC5.44□□□□□ -1.54
HOXA1P49639 AC093107.1-201ENST00000422772 609 ntBASIC5.44□□□□□ -1.54
HOXA1P49639 CHCHD3P1-201ENST00000425516 676 ntBASIC5.44□□□□□ -1.54
HOXA1P49639 HNRNPA1P29-201ENST00000426409 879 ntBASIC5.44□□□□□ -1.54
HOXA1P49639 LINC01522-201ENST00000428999 429 ntTSL 2 BASIC5.44□□□□□ -1.54
HOXA1P49639 AC004039.1-201ENST00000431165 502 ntTSL 5 BASIC5.44□□□□□ -1.54
HOXA1P49639 Z93022.1-201ENST00000433228 1554 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
HOXA1P49639 AC013410.1-201ENST00000436223 1232 ntBASIC5.44□□□□□ -1.54
HOXA1P49639 AC092106.2-201ENST00000436597 487 ntBASIC5.44□□□□□ -1.54
HOXA1P49639 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC5.44□□□□□ -1.54
HOXA1P49639 ST13P2-201ENST00000438916 1109 ntBASIC5.44□□□□□ -1.54
HOXA1P49639 SEPT14P12-201ENST00000442280 560 ntBASIC5.44□□□□□ -1.54
HOXA1P49639 AL731661.2-201ENST00000448824 806 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
HOXA1P49639 LINC01795-201ENST00000454367 813 ntTSL 3 BASIC5.44□□□□□ -1.54
HOXA1P49639 AC073486.1-202ENST00000458437 489 ntTSL 3 BASIC5.44□□□□□ -1.54
HOXA1P49639 RN7SL379P-201ENST00000479912 293 ntBASIC5.44□□□□□ -1.54
HOXA1P49639 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC5.44□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 150.6 ms