Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC098828.2-201ENST00000452342 573 ntTSL 2 BASIC7.55□□□□□ -1.2
MSX1P28360 BX322784.1-201ENST00000455793 1077 ntBASIC7.55□□□□□ -1.2
MSX1P28360 RPS27AP2-201ENST00000457576 465 ntBASIC7.55□□□□□ -1.2
MSX1P28360 PNPLA4P1-201ENST00000458328 305 ntBASIC7.55□□□□□ -1.2
MSX1P28360 RN7SL854P-201ENST00000459767 295 ntBASIC7.55□□□□□ -1.2
MSX1P28360 ANK3-207ENST00000460468 677 ntTSL 3 BASIC7.55□□□□□ -1.2
MSX1P28360 AC100843.1-201ENST00000475372 550 ntBASIC7.55□□□□□ -1.2
MSX1P28360 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC7.55□□□□□ -1.2
MSX1P28360 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
MSX1P28360 HNRNPA1P44-201ENST00000503999 879 ntBASIC7.55□□□□□ -1.2
MSX1P28360 RPL10P19-201ENST00000519013 301 ntBASIC7.55□□□□□ -1.2
MSX1P28360 MIR2052HG-204ENST00000523442 550 ntTSL 4 BASIC7.55□□□□□ -1.2
MSX1P28360 AC022832.1-201ENST00000530718 645 ntBASIC7.55□□□□□ -1.2
MSX1P28360 OR7K1P-201ENST00000546439 926 ntBASIC7.55□□□□□ -1.2
MSX1P28360 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC7.55□□□□□ -1.2
MSX1P28360 AC122685.1-202ENST00000556750 555 ntTSL 2 BASIC7.55□□□□□ -1.2
MSX1P28360 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC7.55□□□□□ -1.2
MSX1P28360 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC7.55□□□□□ -1.2
MSX1P28360 AC015818.5-201ENST00000578659 356 ntBASIC7.55□□□□□ -1.2
MSX1P28360 HIGD1B-203ENST00000587021 457 ntTSL 2 BASIC7.55□□□□□ -1.2
MSX1P28360 BMS1P7-201ENST00000602440 1052 ntBASIC7.55□□□□□ -1.2
MSX1P28360 OR1X1P-201ENST00000606159 931 ntBASIC7.55□□□□□ -1.2
MSX1P28360 AC104237.3-201ENST00000611809 427 ntBASIC7.55□□□□□ -1.2
MSX1P28360 MIR8075-201ENST00000614354 80 ntBASIC7.55□□□□□ -1.2
MSX1P28360 AC124864.2-201ENST00000624736 186 ntBASIC7.55□□□□□ -1.2
MSX1P28360 METTL18-202ENST00000310392 1521 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
MSX1P28360 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC7.55□□□□□ -1.2
MSX1P28360 UGT2B7-205ENST00000622664 1532 ntTSL 5 BASIC7.55□□□□□ -1.2
MSX1P28360 KIAA1324L-203ENST00000416314 3179 ntAPPRIS P3 TSL 2 BASIC7.55□□□□□ -1.2
MSX1P28360 TMCC3-203ENST00000551457 4361 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
MSX1P28360 ZNF793-201ENST00000445217 6712 ntAPPRIS P1 TSL 5 BASIC7.55□□□□□ -1.2
MSX1P28360 LBR-201ENST00000272163 3745 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
MSX1P28360 COPS4-201ENST00000264389 1744 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
MSX1P28360 LRRC37A17P-201ENST00000570311 4693 ntBASIC7.55□□□□□ -1.2
MSX1P28360 AC139256.1-201ENST00000569858 2598 ntTSL 2 BASIC7.55□□□□□ -1.2
MSX1P28360 DGKB-206ENST00000407950 3651 ntTSL 5 BASIC7.55□□□□□ -1.2
MSX1P28360 CTNND1-207ENST00000426142 5800 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
MSX1P28360 MAPK10-279ENST00000641157 2449 ntBASIC7.54□□□□□ -1.2
MSX1P28360 SKA2-201ENST00000330137 2798 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
MSX1P28360 SLC9B1P3-201ENST00000452667 1334 ntBASIC7.54□□□□□ -1.2
MSX1P28360 YY1AP1-203ENST00000347088 2524 ntAPPRIS ALT2 TSL 1 (best) BASIC7.54□□□□□ -1.2
MSX1P28360 CSRNP3-203ENST00000409420 2545 ntTSL 5 BASIC7.54□□□□□ -1.2
MSX1P28360 AC131649.2-201ENST00000624925 4439 ntBASIC7.54□□□□□ -1.2
MSX1P28360 ERBB3-221ENST00000553131 3237 ntTSL 2 BASIC7.54□□□□□ -1.2
MSX1P28360 FRMPD2-213ENST00000636244 4194 ntAPPRIS ALT2 TSL 5 BASIC7.54□□□□□ -1.2
MSX1P28360 TARS2P1-201ENST00000506124 2041 ntBASIC7.54□□□□□ -1.2
MSX1P28360 UTY-202ENST00000331397 6529 ntAPPRIS ALT2 TSL 1 (best) BASIC7.54□□□□□ -1.2
MSX1P28360 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC7.54□□□□□ -1.2
MSX1P28360 TLK2P2-201ENST00000414066 2240 ntBASIC7.54□□□□□ -1.2
MSX1P28360 AC068044.1-201ENST00000441585 1978 ntBASIC7.54□□□□□ -1.2
MSX1P28360 OR2G2-201ENST00000320065 954 ntAPPRIS P1 BASIC7.54□□□□□ -1.2
MSX1P28360 AL121977.1-201ENST00000401636 979 ntBASIC7.54□□□□□ -1.2
MSX1P28360 RPL10P10-201ENST00000403509 664 ntBASIC7.54□□□□□ -1.2
MSX1P28360 FAT1P1-201ENST00000406588 507 ntBASIC7.54□□□□□ -1.2
MSX1P28360 AL772337.2-201ENST00000411992 981 ntTSL 3 BASIC7.54□□□□□ -1.2
MSX1P28360 AC104823.1-201ENST00000413290 989 ntTSL 2 BASIC7.54□□□□□ -1.2
MSX1P28360 SOX9-AS1-202ENST00000414600 742 ntTSL 3 BASIC7.54□□□□□ -1.2
MSX1P28360 AC006455.4-201ENST00000418297 528 ntTSL 4 BASIC7.54□□□□□ -1.2
MSX1P28360 AC019050.1-201ENST00000418508 492 ntBASIC7.54□□□□□ -1.2
MSX1P28360 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC7.54□□□□□ -1.2
MSX1P28360 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC7.54□□□□□ -1.2
MSX1P28360 AC008850.1-201ENST00000427546 362 ntBASIC7.54□□□□□ -1.2
MSX1P28360 RANP5-201ENST00000427731 655 ntBASIC7.54□□□□□ -1.2
MSX1P28360 USP9YP9-201ENST00000429406 715 ntBASIC7.54□□□□□ -1.2
MSX1P28360 OSBPL10-AS1-204ENST00000436598 513 ntTSL 3 BASIC7.54□□□□□ -1.2
MSX1P28360 UBE2V1P3-201ENST00000439651 417 ntBASIC7.54□□□□□ -1.2
MSX1P28360 AL512593.1-201ENST00000444758 779 ntBASIC7.54□□□□□ -1.2
MSX1P28360 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC7.54□□□□□ -1.2
MSX1P28360 AC073188.4-201ENST00000450077 528 ntTSL 4 BASIC7.54□□□□□ -1.2
MSX1P28360 AC079776.3-201ENST00000450665 370 ntBASIC7.54□□□□□ -1.2
MSX1P28360 AL133387.3-201ENST00000450669 522 ntTSL 5 BASIC7.54□□□□□ -1.2
MSX1P28360 HMGB1P5-202ENST00000451497 985 ntBASIC7.54□□□□□ -1.2
MSX1P28360 RN7SL587P-201ENST00000459853 281 ntBASIC7.54□□□□□ -1.2
MSX1P28360 MYADML-203ENST00000491596 951 ntBASIC7.54□□□□□ -1.2
MSX1P28360 AL031864.2-201ENST00000498507 350 ntBASIC7.54□□□□□ -1.2
MSX1P28360 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC7.54□□□□□ -1.2
MSX1P28360 AC025459.1-201ENST00000504072 156 ntBASIC7.54□□□□□ -1.2
MSX1P28360 AC008667.3-201ENST00000506892 553 ntTSL 4 BASIC7.54□□□□□ -1.2
MSX1P28360 AC097451.1-201ENST00000507388 653 ntTSL 3 BASIC7.54□□□□□ -1.2
MSX1P28360 ANKRD55-205ENST00000513241 626 ntTSL 5 BASIC7.54□□□□□ -1.2
MSX1P28360 TBCA-203ENST00000517679 545 ntTSL 3 BASIC7.54□□□□□ -1.2
MSX1P28360 AC110741.1-201ENST00000520149 582 ntTSL 3 BASIC7.54□□□□□ -1.2
MSX1P28360 NACA2-201ENST00000521764 777 ntAPPRIS P1 BASIC7.54□□□□□ -1.2
MSX1P28360 AC091987.1-202ENST00000522464 789 ntTSL 3 BASIC7.54□□□□□ -1.2
MSX1P28360 SLC22A10-203ENST00000526800 699 ntTSL 5 BASIC7.54□□□□□ -1.2
MSX1P28360 AC005832.3-201ENST00000537929 631 ntBASIC7.54□□□□□ -1.2
MSX1P28360 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
MSX1P28360 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC7.54□□□□□ -1.2
MSX1P28360 RNASE11-206ENST00000553849 1101 ntAPPRIS P2 TSL 1 (best) BASIC7.54□□□□□ -1.2
MSX1P28360 SRSF5-206ENST00000554021 567 ntTSL 4 BASIC7.54□□□□□ -1.2
MSX1P28360 GTF2IP22-201ENST00000554443 182 ntBASIC7.54□□□□□ -1.2
MSX1P28360 AL132719.1-201ENST00000554515 423 ntTSL 3 BASIC7.54□□□□□ -1.2
MSX1P28360 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC7.54□□□□□ -1.2
MSX1P28360 AC009121.2-201ENST00000572913 714 ntTSL 3 BASIC7.54□□□□□ -1.2
MSX1P28360 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC7.54□□□□□ -1.2
MSX1P28360 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC7.54□□□□□ -1.2
MSX1P28360 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC7.54□□□□□ -1.2
MSX1P28360 VN1R79P-201ENST00000593540 513 ntBASIC7.54□□□□□ -1.2
MSX1P28360 AC008392.1-201ENST00000600941 437 ntTSL 2 BASIC7.54□□□□□ -1.2
MSX1P28360 AC027243.2-201ENST00000602530 724 ntBASIC7.54□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 112.1 ms