Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AP002370.1-201ENST00000528055 1602 ntBASIC6.02□□□□□ -1.45
COL5A1P20908 ERBB4-202ENST00000342788 12136 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL5A1P20908 BNC1-202ENST00000569704 3169 ntAPPRIS ALT2 TSL 5 BASIC6.02□□□□□ -1.45
COL5A1P20908 TMEM68-219ENST00000617977 4512 ntTSL 5 BASIC6.02□□□□□ -1.45
COL5A1P20908 SF3B3-201ENST00000302516 9720 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL5A1P20908 RNF19BPY-201ENST00000458209 1550 ntBASIC6.02□□□□□ -1.45
COL5A1P20908 MAPK10-365ENST00000641902 3825 ntBASIC6.02□□□□□ -1.45
COL5A1P20908 LHX9-201ENST00000367387 7836 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL5A1P20908 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL5A1P20908 RPS3AP2-201ENST00000407190 754 ntBASIC6.02□□□□□ -1.45
COL5A1P20908 GAS5-202ENST00000414075 413 ntTSL 2 BASIC6.02□□□□□ -1.45
COL5A1P20908 SDHDP6-201ENST00000414693 480 ntBASIC6.02□□□□□ -1.45
COL5A1P20908 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC6.02□□□□□ -1.45
COL5A1P20908 AC011742.2-201ENST00000443818 352 ntBASIC6.02□□□□□ -1.45
COL5A1P20908 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
COL5A1P20908 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC6.02□□□□□ -1.45
COL5A1P20908 FAM186A-203ENST00000543096 2116 ntAPPRIS ALT2 TSL 2 BASIC6.02□□□□□ -1.45
COL5A1P20908 LINC02424-201ENST00000548512 1264 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
COL5A1P20908 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC6.02□□□□□ -1.45
COL5A1P20908 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL5A1P20908 ANKS4B-201ENST00000311620 4352 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL5A1P20908 CNTNAP4-206ENST00000478060 3708 ntTSL 5 BASIC6.01□□□□□ -1.45
COL5A1P20908 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
COL5A1P20908 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL5A1P20908 KPNA1-201ENST00000344337 6830 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL5A1P20908 MIER3-205ENST00000409421 2152 ntTSL 2 BASIC6.01□□□□□ -1.45
COL5A1P20908 AC022325.1-201ENST00000502748 2199 ntBASIC6.01□□□□□ -1.45
COL5A1P20908 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
COL5A1P20908 RASGEF1B-203ENST00000436139 6323 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
COL5A1P20908 MYH15-201ENST00000273353 7074 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL5A1P20908 LINC00343-202ENST00000415294 1320 ntTSL 5 BASIC6.01□□□□□ -1.45
COL5A1P20908 MAP3K20-201ENST00000338983 7179 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
COL5A1P20908 MLLT3-203ENST00000380338 6772 ntAPPRIS P3 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL5A1P20908 ATP1A1-203ENST00000369496 3572 ntTSL 2 BASIC6.01□□□□□ -1.45
COL5A1P20908 PEX13-201ENST00000295030 4470 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL5A1P20908 FAM216B-202ENST00000537894 3300 ntAPPRIS P1 TSL 4 BASIC6.01□□□□□ -1.45
COL5A1P20908 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL5A1P20908 RN7SKP161-201ENST00000411110 305 ntBASIC6.01□□□□□ -1.45
COL5A1P20908 DPPA2P3-201ENST00000411853 655 ntBASIC6.01□□□□□ -1.45
COL5A1P20908 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC6.01□□□□□ -1.45
COL5A1P20908 AL451136.1-201ENST00000435399 325 ntBASIC6.01□□□□□ -1.45
COL5A1P20908 SNX18P26-201ENST00000458433 740 ntBASIC6.01□□□□□ -1.45
COL5A1P20908 AC068522.1-201ENST00000482895 345 ntBASIC6.01□□□□□ -1.45
COL5A1P20908 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC6.01□□□□□ -1.45
COL5A1P20908 ZNF322P1-201ENST00000568013 1209 ntBASIC6.01□□□□□ -1.45
COL5A1P20908 Z98949.1-228ENST00000595093 798 ntTSL 5 BASIC6.01□□□□□ -1.45
COL5A1P20908 COX6CP7-201ENST00000597056 208 ntBASIC6.01□□□□□ -1.45
COL5A1P20908 OR7A11P-201ENST00000597719 953 ntBASIC6.01□□□□□ -1.45
COL5A1P20908 AC211433.2-201ENST00000608433 387 ntBASIC6.01□□□□□ -1.45
COL5A1P20908 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC6.01□□□□□ -1.45
COL5A1P20908 AC012254.5-201ENST00000623573 478 ntBASIC6.01□□□□□ -1.45
COL5A1P20908 B3GALT1-201ENST00000392690 5094 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
COL5A1P20908 AC138915.4-201ENST00000565549 4147 ntBASIC6.01□□□□□ -1.45
COL5A1P20908 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC6.01□□□□□ -1.45
COL5A1P20908 MTMR7-201ENST00000180173 3850 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL5A1P20908 AF287957.1-201ENST00000607368 1595 ntBASIC6.01□□□□□ -1.45
COL5A1P20908 EEF1A1P24-201ENST00000451469 1378 ntBASIC6.01□□□□□ -1.45
COL5A1P20908 AMN1-208ENST00000537562 1538 ntTSL 5 BASIC6□□□□□ -1.45
COL5A1P20908 AP002364.1-201ENST00000623330 3386 ntBASIC6□□□□□ -1.45
COL5A1P20908 ZNF268-201ENST00000228289 3543 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL5A1P20908 SLC17A4-202ENST00000397076 2331 ntTSL 2 BASIC6□□□□□ -1.45
COL5A1P20908 SLC35A3-207ENST00000533028 14759 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL5A1P20908 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC6□□□□□ -1.45
COL5A1P20908 AC092807.3-203ENST00000467530 2745 ntTSL 2 BASIC6□□□□□ -1.45
COL5A1P20908 TMSB4XP2-201ENST00000335179 210 ntBASIC6□□□□□ -1.45
COL5A1P20908 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC6□□□□□ -1.45
COL5A1P20908 RNA5SP156-201ENST00000410250 110 ntBASIC6□□□□□ -1.45
COL5A1P20908 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC6□□□□□ -1.45
COL5A1P20908 AL035660.1-201ENST00000422041 222 ntBASIC6□□□□□ -1.45
COL5A1P20908 AL359644.1-204ENST00000440807 440 ntTSL 3 BASIC6□□□□□ -1.45
COL5A1P20908 PEX5L-AS1-201ENST00000466064 827 ntTSL 2 BASIC6□□□□□ -1.45
COL5A1P20908 AL136038.1-201ENST00000497246 351 ntBASIC6□□□□□ -1.45
COL5A1P20908 AC010609.1-201ENST00000519375 569 ntTSL 3 BASIC6□□□□□ -1.45
COL5A1P20908 KCTD9P4-201ENST00000526766 1166 ntBASIC6□□□□□ -1.45
COL5A1P20908 AC021269.1-201ENST00000526860 705 ntBASIC6□□□□□ -1.45
COL5A1P20908 AP005639.1-201ENST00000526939 192 ntBASIC6□□□□□ -1.45
COL5A1P20908 AL008723.3-201ENST00000608926 449 ntBASIC6□□□□□ -1.45
COL5A1P20908 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC6□□□□□ -1.45
COL5A1P20908 NBPF3-202ENST00000318249 3591 ntAPPRIS P3 TSL 1 (best) BASIC6□□□□□ -1.45
COL5A1P20908 FO082842.1-201ENST00000423552 1370 ntBASIC6□□□□□ -1.45
COL5A1P20908 NUMB-223ENST00000556772 5172 ntTSL 1 (best) BASIC6□□□□□ -1.45
COL5A1P20908 LINC00861-201ENST00000500989 5330 ntTSL 1 (best) BASIC6□□□□□ -1.45
COL5A1P20908 SCOC-204ENST00000394205 1964 ntTSL 2 BASIC6□□□□□ -1.45
COL5A1P20908 SPTAN1-222ENST00000630804 7812 ntTSL 5 BASIC6□□□□□ -1.45
COL5A1P20908 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC6□□□□□ -1.45
COL5A1P20908 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC6□□□□□ -1.45
COL5A1P20908 CAST-222ENST00000508579 1758 ntTSL 2 BASIC6□□□□□ -1.45
COL5A1P20908 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC6□□□□□ -1.45
COL5A1P20908 ZNF630-202ENST00000409324 2455 ntAPPRIS P2 TSL 1 (best) BASIC6□□□□□ -1.45
COL5A1P20908 CEP85-201ENST00000252992 3935 ntAPPRIS P3 TSL 1 (best) BASIC6□□□□□ -1.45
COL5A1P20908 AC009120.2-204ENST00000621548 2032 ntBASIC6□□□□□ -1.45
COL5A1P20908 KAT6B-202ENST00000372711 7560 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL5A1P20908 WDR7-213ENST00000615645 5257 ntTSL 5 BASIC5.99□□□□□ -1.45
COL5A1P20908 AP002833.3-201ENST00000625075 2265 ntBASIC5.99□□□□□ -1.45
COL5A1P20908 MAPK10-261ENST00000641050 3109 ntBASIC5.99□□□□□ -1.45
COL5A1P20908 C9orf147-201ENST00000412934 584 ntTSL 3 BASIC5.99□□□□□ -1.45
COL5A1P20908 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC5.99□□□□□ -1.45
COL5A1P20908 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC5.99□□□□□ -1.45
COL5A1P20908 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC5.99□□□□□ -1.45
COL5A1P20908 GK-IT1-201ENST00000441146 397 ntTSL 5 BASIC5.99□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 78.4 ms