Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC073072.2-201ENST00000447425 348 ntBASIC6.17□□□□□ -1.42
COL6A3P12111 RPS4XP23-201ENST00000487801 237 ntBASIC6.17□□□□□ -1.42
COL6A3P12111 CLEC7A-208ENST00000525605 573 ntTSL 4 BASIC6.17□□□□□ -1.42
COL6A3P12111 PPP4R1-AS1-201ENST00000582435 379 ntTSL 2 BASIC6.17□□□□□ -1.42
COL6A3P12111 GTF2IP6-201ENST00000583143 541 ntBASIC6.17□□□□□ -1.42
COL6A3P12111 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC6.17□□□□□ -1.42
COL6A3P12111 FTO-223ENST00000640179 210 ntTSL 5 BASIC6.17□□□□□ -1.42
COL6A3P12111 RGS6-201ENST00000343854 5342 ntTSL 5 BASIC6.17□□□□□ -1.42
COL6A3P12111 YTHDC1-201ENST00000344157 6232 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL6A3P12111 ZNF473-202ENST00000391821 4715 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL6A3P12111 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL6A3P12111 MROH3P-201ENST00000435735 2676 ntBASIC6.17□□□□□ -1.42
COL6A3P12111 RASGEF1B-214ENST00000638048 2386 ntTSL 5 BASIC6.17□□□□□ -1.42
COL6A3P12111 XDH-201ENST00000379416 5688 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL6A3P12111 FAM49B-226ENST00000523509 1968 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL6A3P12111 SMG1P5-202ENST00000529428 4219 ntBASIC6.16□□□□□ -1.42
COL6A3P12111 SMG1P2-201ENST00000566127 4221 ntBASIC6.16□□□□□ -1.42
COL6A3P12111 OSGEPL1-207ENST00000522700 1779 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL6A3P12111 AC005294.1-201ENST00000355509 281 ntBASIC6.16□□□□□ -1.42
COL6A3P12111 AL451062.2-201ENST00000427515 271 ntBASIC6.16□□□□□ -1.42
COL6A3P12111 AC006946.1-201ENST00000429106 328 ntBASIC6.16□□□□□ -1.42
COL6A3P12111 RPS7P3-201ENST00000443360 580 ntBASIC6.16□□□□□ -1.42
COL6A3P12111 NRBF2P4-201ENST00000520874 850 ntBASIC6.16□□□□□ -1.42
COL6A3P12111 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC6.16□□□□□ -1.42
COL6A3P12111 AC016144.1-201ENST00000548175 1087 ntBASIC6.16□□□□□ -1.42
COL6A3P12111 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
COL6A3P12111 PWRN1-210ENST00000568045 1299 ntTSL 2 BASIC6.16□□□□□ -1.42
COL6A3P12111 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC6.16□□□□□ -1.42
COL6A3P12111 PDCD11-201ENST00000369797 6453 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL6A3P12111 SON-202ENST00000356577 8813 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL6A3P12111 NFASC-206ENST00000404076 5728 ntTSL 5 BASIC6.16□□□□□ -1.42
COL6A3P12111 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL6A3P12111 NDUFA4-201ENST00000339600 2130 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL6A3P12111 CLIP1-202ENST00000358808 5880 ntAPPRIS P4 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL6A3P12111 SERINC5-202ENST00000507668 6479 ntAPPRIS P1 TSL 2 BASIC6.16□□□□□ -1.42
COL6A3P12111 GTF2A1-203ENST00000553612 6306 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL6A3P12111 NCAM1-225ENST00000618266 5937 ntAPPRIS ALT2 TSL 5 BASIC6.16□□□□□ -1.42
COL6A3P12111 KCNAB1-212ENST00000490337 3122 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL6A3P12111 IL5RA-207ENST00000438560 2252 ntAPPRIS ALT2 TSL 2 BASIC6.16□□□□□ -1.42
COL6A3P12111 PTAFR-202ENST00000373857 4491 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL6A3P12111 AL136531.3-201ENST00000624378 3658 ntBASIC6.16□□□□□ -1.42
COL6A3P12111 ARHGAP20-202ENST00000524756 6180 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL6A3P12111 AC025263.1-201ENST00000501387 2538 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL6A3P12111 KLRD1-203ENST00000350274 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL6A3P12111 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
COL6A3P12111 AL359837.1-201ENST00000381357 287 ntBASIC6.16□□□□□ -1.42
COL6A3P12111 SNORA57.1-201ENST00000391227 145 ntBASIC6.16□□□□□ -1.42
COL6A3P12111 PRELID1P2-201ENST00000407805 396 ntBASIC6.16□□□□□ -1.42
COL6A3P12111 AC019050.1-201ENST00000418508 492 ntBASIC6.16□□□□□ -1.42
COL6A3P12111 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC6.16□□□□□ -1.42
COL6A3P12111 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC6.16□□□□□ -1.42
COL6A3P12111 AC083795.1-201ENST00000491760 320 ntBASIC6.16□□□□□ -1.42
COL6A3P12111 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC6.16□□□□□ -1.42
COL6A3P12111 AL137067.2-201ENST00000621202 131 ntBASIC6.16□□□□□ -1.42
COL6A3P12111 OR8B1P-202ENST00000641132 1178 ntBASIC6.16□□□□□ -1.42
COL6A3P12111 SLC38A1-201ENST00000398637 8066 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL6A3P12111 STARD5-201ENST00000302824 4871 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL6A3P12111 TRAF5-201ENST00000261464 3972 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL6A3P12111 PAK5-201ENST00000353224 4500 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL6A3P12111 AC098850.4-201ENST00000448331 8802 ntAPPRIS P1 TSL 2 BASIC6.16□□□□□ -1.42
COL6A3P12111 C7-201ENST00000313164 4257 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL6A3P12111 HP1BP3-201ENST00000312239 3938 ntAPPRIS P1 TSL 2 BASIC6.16□□□□□ -1.42
COL6A3P12111 SPATA13-206ENST00000424834 8603 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL6A3P12111 NTPCR-202ENST00000366628 6311 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL6A3P12111 GIT2-205ENST00000457474 5291 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL6A3P12111 AC107884.1-202ENST00000622955 2703 ntTSL 5 BASIC6.16□□□□□ -1.42
COL6A3P12111 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
COL6A3P12111 ENTPD1-201ENST00000371205 2035 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL6A3P12111 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC6.16□□□□□ -1.42
COL6A3P12111 XAGE5-202ENST00000375501 415 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
COL6A3P12111 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC6.16□□□□□ -1.42
COL6A3P12111 DEFA11P-201ENST00000446470 261 ntBASIC6.16□□□□□ -1.42
COL6A3P12111 AC068759.1-201ENST00000447709 470 ntTSL 5 BASIC6.16□□□□□ -1.42
COL6A3P12111 AL034399.1-201ENST00000451535 380 ntBASIC6.16□□□□□ -1.42
COL6A3P12111 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC6.16□□□□□ -1.42
COL6A3P12111 RPL23AP68-201ENST00000480924 445 ntBASIC6.16□□□□□ -1.42
COL6A3P12111 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC6.16□□□□□ -1.42
COL6A3P12111 MIR7159-201ENST00000620587 66 ntBASIC6.16□□□□□ -1.42
COL6A3P12111 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC6.16□□□□□ -1.42
COL6A3P12111 KIF15-201ENST00000326047 4842 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL6A3P12111 SGSM1-201ENST00000400358 6643 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL6A3P12111 LINC01968-202ENST00000423318 3647 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL6A3P12111 MORC2-202ENST00000397641 5181 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
COL6A3P12111 TMEM108-211ENST00000515826 4833 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL6A3P12111 GFRA1-203ENST00000369236 9109 ntAPPRIS P3 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL6A3P12111 CTDSPL2-201ENST00000260327 6828 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL6A3P12111 MAST4-201ENST00000261569 7664 ntAPPRIS ALT2 TSL 5 BASIC6.15□□□□□ -1.42
COL6A3P12111 LRRC37A3-211ENST00000584306 5665 ntAPPRIS P2 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL6A3P12111 CEP41-201ENST00000223208 6513 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL6A3P12111 LMO3-204ENST00000354662 3574 ntAPPRIS P1 TSL 2 BASIC6.15□□□□□ -1.42
COL6A3P12111 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL6A3P12111 DUTP5-201ENST00000406790 469 ntBASIC6.15□□□□□ -1.42
COL6A3P12111 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC6.15□□□□□ -1.42
COL6A3P12111 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
COL6A3P12111 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC6.15□□□□□ -1.42
COL6A3P12111 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC6.15□□□□□ -1.42
COL6A3P12111 BOD1L1-201ENST00000040738 10565 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL6A3P12111 ATM-215ENST00000530958 5718 ntTSL 2 BASIC6.15□□□□□ -1.42
COL6A3P12111 AFF2-205ENST00000370460 13746 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
COL6A3P12111 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC6.15□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms