Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SNX9Q9Y5X1 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SNX9Q9Y5X1 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC21.21■□□□□ 0.99
SNX9Q9Y5X1 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC21.21■□□□□ 0.99
SNX9Q9Y5X1 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
SNX9Q9Y5X1 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
SNX9Q9Y5X1 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
SNX9Q9Y5X1 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SNX9Q9Y5X1 BAALC-201ENST00000297574 801 ntTSL 3 BASIC21.21■□□□□ 0.99
SNX9Q9Y5X1 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
SNX9Q9Y5X1 TREX2-204ENST00000370212 861 ntTSL 5 BASIC21.21■□□□□ 0.99
SNX9Q9Y5X1 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
SNX9Q9Y5X1 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
SNX9Q9Y5X1 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SNX9Q9Y5X1 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC21.21■□□□□ 0.99
SNX9Q9Y5X1 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC21.21■□□□□ 0.99
SNX9Q9Y5X1 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC21.21■□□□□ 0.99
SNX9Q9Y5X1 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC21.21■□□□□ 0.99
SNX9Q9Y5X1 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SNX9Q9Y5X1 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC21.21■□□□□ 0.99
SNX9Q9Y5X1 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC21.21■□□□□ 0.99
SNX9Q9Y5X1 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SNX9Q9Y5X1 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC21.21■□□□□ 0.99
SNX9Q9Y5X1 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SNX9Q9Y5X1 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SNX9Q9Y5X1 AL691432.2-201ENST00000607222 2038 ntBASIC21.21■□□□□ 0.99
SNX9Q9Y5X1 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
SNX9Q9Y5X1 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
SNX9Q9Y5X1 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
SNX9Q9Y5X1 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SNX9Q9Y5X1 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SNX9Q9Y5X1 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC21.2■□□□□ 0.98
SNX9Q9Y5X1 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SNX9Q9Y5X1 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SNX9Q9Y5X1 LINC01521-201ENST00000504184 1943 ntBASIC21.2■□□□□ 0.98
SNX9Q9Y5X1 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
SNX9Q9Y5X1 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SNX9Q9Y5X1 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SNX9Q9Y5X1 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
SNX9Q9Y5X1 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC21.2■□□□□ 0.98
SNX9Q9Y5X1 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC21.2■□□□□ 0.98
SNX9Q9Y5X1 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC21.2■□□□□ 0.98
SNX9Q9Y5X1 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC21.2■□□□□ 0.98
SNX9Q9Y5X1 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SNX9Q9Y5X1 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC21.2■□□□□ 0.98
SNX9Q9Y5X1 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
SNX9Q9Y5X1 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
SNX9Q9Y5X1 NBPF21P-201ENST00000425093 1451 ntBASIC21.2■□□□□ 0.98
SNX9Q9Y5X1 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC21.2■□□□□ 0.98
SNX9Q9Y5X1 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC21.19■□□□□ 0.98
SNX9Q9Y5X1 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
SNX9Q9Y5X1 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SNX9Q9Y5X1 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SNX9Q9Y5X1 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SNX9Q9Y5X1 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC21.19■□□□□ 0.98
SNX9Q9Y5X1 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SNX9Q9Y5X1 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SNX9Q9Y5X1 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SNX9Q9Y5X1 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SNX9Q9Y5X1 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
SNX9Q9Y5X1 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SNX9Q9Y5X1 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC21.19■□□□□ 0.98
SNX9Q9Y5X1 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SNX9Q9Y5X1 F2R-202ENST00000505600 442 ntTSL 2 BASIC21.19■□□□□ 0.98
SNX9Q9Y5X1 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC21.19■□□□□ 0.98
SNX9Q9Y5X1 TK2-204ENST00000525974 1178 ntTSL 2 BASIC21.19■□□□□ 0.98
SNX9Q9Y5X1 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SNX9Q9Y5X1 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC21.19■□□□□ 0.98
SNX9Q9Y5X1 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC21.19■□□□□ 0.98
SNX9Q9Y5X1 AP006294.2-201ENST00000641667 209 ntBASIC21.19■□□□□ 0.98
SNX9Q9Y5X1 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
SNX9Q9Y5X1 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SNX9Q9Y5X1 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SNX9Q9Y5X1 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC21.19■□□□□ 0.98
SNX9Q9Y5X1 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC21.19■□□□□ 0.98
SNX9Q9Y5X1 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC21.19■□□□□ 0.98
SNX9Q9Y5X1 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SNX9Q9Y5X1 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SNX9Q9Y5X1 USP39-204ENST00000409766 2033 ntTSL 2 BASIC21.19■□□□□ 0.98
SNX9Q9Y5X1 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
SNX9Q9Y5X1 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.19■□□□□ 0.98
SNX9Q9Y5X1 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC21.19■□□□□ 0.98
SNX9Q9Y5X1 TFP1-202ENST00000475455 1573 ntBASIC21.19■□□□□ 0.98
SNX9Q9Y5X1 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
SNX9Q9Y5X1 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SNX9Q9Y5X1 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SNX9Q9Y5X1 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SNX9Q9Y5X1 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC21.18■□□□□ 0.98
SNX9Q9Y5X1 USP36-216ENST00000589424 970 ntTSL 5 BASIC21.18■□□□□ 0.98
SNX9Q9Y5X1 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC21.18■□□□□ 0.98
SNX9Q9Y5X1 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
SNX9Q9Y5X1 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
SNX9Q9Y5X1 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
SNX9Q9Y5X1 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC21.18■□□□□ 0.98
SNX9Q9Y5X1 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SNX9Q9Y5X1 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC21.17■□□□□ 0.98
SNX9Q9Y5X1 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
SNX9Q9Y5X1 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.17■□□□□ 0.98
SNX9Q9Y5X1 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SNX9Q9Y5X1 AC112907.3-201ENST00000577781 2400 ntBASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms