Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
LIMD1Q9UGP4 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIMD1Q9UGP4 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIMD1Q9UGP4 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIMD1Q9UGP4 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC20.66■□□□□ 0.9
LIMD1Q9UGP4 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LIMD1Q9UGP4 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC20.66■□□□□ 0.9
LIMD1Q9UGP4 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LIMD1Q9UGP4 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC20.66■□□□□ 0.9
LIMD1Q9UGP4 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC20.66■□□□□ 0.9
LIMD1Q9UGP4 C2orf69P3-201ENST00000565542 1120 ntBASIC20.66■□□□□ 0.9
LIMD1Q9UGP4 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LIMD1Q9UGP4 GRAMD4P8-201ENST00000605465 1115 ntBASIC20.66■□□□□ 0.9
LIMD1Q9UGP4 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC20.66■□□□□ 0.9
LIMD1Q9UGP4 AL031985.4-201ENST00000642138 673 ntBASIC20.66■□□□□ 0.9
LIMD1Q9UGP4 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LIMD1Q9UGP4 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIMD1Q9UGP4 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIMD1Q9UGP4 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC20.66■□□□□ 0.9
LIMD1Q9UGP4 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.66■□□□□ 0.9
LIMD1Q9UGP4 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC20.66■□□□□ 0.9
LIMD1Q9UGP4 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.66■□□□□ 0.9
LIMD1Q9UGP4 AC027702.1-201ENST00000563810 1770 ntBASIC20.66■□□□□ 0.9
LIMD1Q9UGP4 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LIMD1Q9UGP4 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.66■□□□□ 0.9
LIMD1Q9UGP4 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIMD1Q9UGP4 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.66■□□□□ 0.9
LIMD1Q9UGP4 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIMD1Q9UGP4 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.65■□□□□ 0.9
LIMD1Q9UGP4 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIMD1Q9UGP4 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIMD1Q9UGP4 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.65■□□□□ 0.9
LIMD1Q9UGP4 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LIMD1Q9UGP4 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
LIMD1Q9UGP4 LGALS8-AS1-201ENST00000487567 1457 ntBASIC20.65■□□□□ 0.9
LIMD1Q9UGP4 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
LIMD1Q9UGP4 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
LIMD1Q9UGP4 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC20.65■□□□□ 0.9
LIMD1Q9UGP4 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIMD1Q9UGP4 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC20.65■□□□□ 0.9
LIMD1Q9UGP4 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LIMD1Q9UGP4 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIMD1Q9UGP4 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC20.65■□□□□ 0.9
LIMD1Q9UGP4 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
LIMD1Q9UGP4 AC026310.3-201ENST00000625186 2373 ntBASIC20.65■□□□□ 0.9
LIMD1Q9UGP4 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIMD1Q9UGP4 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LIMD1Q9UGP4 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.64■□□□□ 0.9
LIMD1Q9UGP4 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.64■□□□□ 0.9
LIMD1Q9UGP4 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
LIMD1Q9UGP4 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
LIMD1Q9UGP4 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.64■□□□□ 0.9
LIMD1Q9UGP4 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
LIMD1Q9UGP4 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
LIMD1Q9UGP4 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC20.64■□□□□ 0.9
LIMD1Q9UGP4 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.9
LIMD1Q9UGP4 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIMD1Q9UGP4 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIMD1Q9UGP4 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
LIMD1Q9UGP4 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
LIMD1Q9UGP4 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIMD1Q9UGP4 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIMD1Q9UGP4 GUK1-204ENST00000366721 689 ntTSL 3 BASIC20.64■□□□□ 0.89
LIMD1Q9UGP4 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC20.64■□□□□ 0.89
LIMD1Q9UGP4 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIMD1Q9UGP4 UPK3BP1-201ENST00000428678 509 ntBASIC20.64■□□□□ 0.89
LIMD1Q9UGP4 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC20.64■□□□□ 0.89
LIMD1Q9UGP4 LTBR-211ENST00000543190 785 ntTSL 3 BASIC20.64■□□□□ 0.89
LIMD1Q9UGP4 MIR2861-201ENST00000636310 90 ntBASIC20.64■□□□□ 0.89
LIMD1Q9UGP4 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
LIMD1Q9UGP4 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIMD1Q9UGP4 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC20.64■□□□□ 0.89
LIMD1Q9UGP4 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIMD1Q9UGP4 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIMD1Q9UGP4 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.64■□□□□ 0.89
LIMD1Q9UGP4 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIMD1Q9UGP4 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.63■□□□□ 0.89
LIMD1Q9UGP4 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC20.63■□□□□ 0.89
LIMD1Q9UGP4 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC20.63■□□□□ 0.89
LIMD1Q9UGP4 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.63■□□□□ 0.89
LIMD1Q9UGP4 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIMD1Q9UGP4 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIMD1Q9UGP4 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIMD1Q9UGP4 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
LIMD1Q9UGP4 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
LIMD1Q9UGP4 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.63■□□□□ 0.89
LIMD1Q9UGP4 HLA-G-202ENST00000376815 851 ntBASIC20.63■□□□□ 0.89
LIMD1Q9UGP4 HLA-G-203ENST00000376818 1127 ntBASIC20.63■□□□□ 0.89
LIMD1Q9UGP4 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC20.63■□□□□ 0.89
LIMD1Q9UGP4 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
LIMD1Q9UGP4 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC20.63■□□□□ 0.89
LIMD1Q9UGP4 AL358472.4-201ENST00000633140 710 ntBASIC20.63■□□□□ 0.89
LIMD1Q9UGP4 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIMD1Q9UGP4 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIMD1Q9UGP4 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIMD1Q9UGP4 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LIMD1Q9UGP4 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
LIMD1Q9UGP4 FSCN1P1-201ENST00000568912 1481 ntBASIC20.62■□□□□ 0.89
LIMD1Q9UGP4 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LIMD1Q9UGP4 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms