Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
TM9SF3Q9HD45 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.76
TM9SF3Q9HD45 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.83■□□□□ 0.76
TM9SF3Q9HD45 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
TM9SF3Q9HD45 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
TM9SF3Q9HD45 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
TM9SF3Q9HD45 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
TM9SF3Q9HD45 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
TM9SF3Q9HD45 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
TM9SF3Q9HD45 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TM9SF3Q9HD45 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TM9SF3Q9HD45 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.82■□□□□ 0.76
TM9SF3Q9HD45 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.82■□□□□ 0.76
TM9SF3Q9HD45 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
TM9SF3Q9HD45 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TM9SF3Q9HD45 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TM9SF3Q9HD45 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TM9SF3Q9HD45 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TM9SF3Q9HD45 FDX2-207ENST00000494368 584 ntTSL 4 BASIC19.82■□□□□ 0.76
TM9SF3Q9HD45 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC19.82■□□□□ 0.76
TM9SF3Q9HD45 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC19.82■□□□□ 0.76
TM9SF3Q9HD45 AC073195.1-201ENST00000607241 877 ntBASIC19.82■□□□□ 0.76
TM9SF3Q9HD45 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC19.82■□□□□ 0.76
TM9SF3Q9HD45 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC19.82■□□□□ 0.76
TM9SF3Q9HD45 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TM9SF3Q9HD45 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TM9SF3Q9HD45 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
TM9SF3Q9HD45 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.81■□□□□ 0.76
TM9SF3Q9HD45 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
TM9SF3Q9HD45 SRI-203ENST00000419179 1307 ntTSL 2 BASIC19.81■□□□□ 0.76
TM9SF3Q9HD45 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TM9SF3Q9HD45 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
TM9SF3Q9HD45 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TM9SF3Q9HD45 MMP23A-201ENST00000234610 1017 ntBASIC19.81■□□□□ 0.76
TM9SF3Q9HD45 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
TM9SF3Q9HD45 RCN1P1-201ENST00000400413 996 ntBASIC19.81■□□□□ 0.76
TM9SF3Q9HD45 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC19.81■□□□□ 0.76
TM9SF3Q9HD45 PPOX-219ENST00000544598 813 ntTSL 2 BASIC19.81■□□□□ 0.76
TM9SF3Q9HD45 AC004264.1-201ENST00000608354 794 ntBASIC19.81■□□□□ 0.76
TM9SF3Q9HD45 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC19.81■□□□□ 0.76
TM9SF3Q9HD45 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
TM9SF3Q9HD45 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
TM9SF3Q9HD45 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
TM9SF3Q9HD45 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
TM9SF3Q9HD45 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
TM9SF3Q9HD45 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TM9SF3Q9HD45 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TM9SF3Q9HD45 AL049796.1-201ENST00000565336 1766 ntBASIC19.8■□□□□ 0.76
TM9SF3Q9HD45 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TM9SF3Q9HD45 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC19.8■□□□□ 0.76
TM9SF3Q9HD45 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC19.8■□□□□ 0.76
TM9SF3Q9HD45 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.8■□□□□ 0.76
TM9SF3Q9HD45 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TM9SF3Q9HD45 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.8■□□□□ 0.76
TM9SF3Q9HD45 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.8■□□□□ 0.76
TM9SF3Q9HD45 HLA-G-202ENST00000376815 851 ntBASIC19.8■□□□□ 0.76
TM9SF3Q9HD45 HLA-G-203ENST00000376818 1127 ntBASIC19.8■□□□□ 0.76
TM9SF3Q9HD45 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
TM9SF3Q9HD45 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC19.8■□□□□ 0.76
TM9SF3Q9HD45 DECR2-212ENST00000627716 352 ntTSL 2 BASIC19.8■□□□□ 0.76
TM9SF3Q9HD45 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC19.8■□□□□ 0.76
TM9SF3Q9HD45 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TM9SF3Q9HD45 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TM9SF3Q9HD45 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TM9SF3Q9HD45 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.8■□□□□ 0.76
TM9SF3Q9HD45 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.8■□□□□ 0.76
TM9SF3Q9HD45 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.8■□□□□ 0.76
TM9SF3Q9HD45 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TM9SF3Q9HD45 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.79■□□□□ 0.76
TM9SF3Q9HD45 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
TM9SF3Q9HD45 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TM9SF3Q9HD45 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TM9SF3Q9HD45 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TM9SF3Q9HD45 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TM9SF3Q9HD45 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TM9SF3Q9HD45 TK2-213ENST00000563369 882 ntTSL 5 BASIC19.79■□□□□ 0.76
TM9SF3Q9HD45 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC19.79■□□□□ 0.76
TM9SF3Q9HD45 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TM9SF3Q9HD45 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.79■□□□□ 0.76
TM9SF3Q9HD45 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
TM9SF3Q9HD45 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
TM9SF3Q9HD45 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
TM9SF3Q9HD45 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TM9SF3Q9HD45 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.78■□□□□ 0.76
TM9SF3Q9HD45 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
TM9SF3Q9HD45 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TM9SF3Q9HD45 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
TM9SF3Q9HD45 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TM9SF3Q9HD45 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
TM9SF3Q9HD45 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.78■□□□□ 0.76
TM9SF3Q9HD45 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TM9SF3Q9HD45 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TM9SF3Q9HD45 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TM9SF3Q9HD45 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
TM9SF3Q9HD45 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TM9SF3Q9HD45 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
TM9SF3Q9HD45 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TM9SF3Q9HD45 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TM9SF3Q9HD45 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TM9SF3Q9HD45 PTBP1P-201ENST00000554374 1601 ntBASIC19.77■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms