Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 PARP1-202ENST00000366792 553 ntTSL 3 BASIC17.23■□□□□ 0.35
NKX3-1Q99801 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC17.23■□□□□ 0.35
NKX3-1Q99801 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
NKX3-1Q99801 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
NKX3-1Q99801 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
NKX3-1Q99801 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC17.23■□□□□ 0.35
NKX3-1Q99801 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC17.23■□□□□ 0.35
NKX3-1Q99801 CD44-222ENST00000526025 1052 ntTSL 2 BASIC17.23■□□□□ 0.35
NKX3-1Q99801 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC17.23■□□□□ 0.35
NKX3-1Q99801 MYCNOS-205ENST00000641950 531 ntBASIC17.23■□□□□ 0.35
NKX3-1Q99801 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
NKX3-1Q99801 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
NKX3-1Q99801 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
NKX3-1Q99801 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
NKX3-1Q99801 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC17.23■□□□□ 0.35
NKX3-1Q99801 TNXA-203ENST00000507684 2038 ntBASIC17.23■□□□□ 0.35
NKX3-1Q99801 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
NKX3-1Q99801 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NKX3-1Q99801 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC17.22■□□□□ 0.35
NKX3-1Q99801 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC17.22■□□□□ 0.35
NKX3-1Q99801 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NKX3-1Q99801 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC17.22■□□□□ 0.35
NKX3-1Q99801 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
NKX3-1Q99801 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
NKX3-1Q99801 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NKX3-1Q99801 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
NKX3-1Q99801 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC17.22■□□□□ 0.35
NKX3-1Q99801 CDV3P1-201ENST00000471403 739 ntBASIC17.22■□□□□ 0.35
NKX3-1Q99801 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC17.22■□□□□ 0.35
NKX3-1Q99801 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC17.22■□□□□ 0.35
NKX3-1Q99801 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC17.22■□□□□ 0.35
NKX3-1Q99801 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC17.22■□□□□ 0.35
NKX3-1Q99801 AL356652.1-201ENST00000615962 565 ntBASIC17.22■□□□□ 0.35
NKX3-1Q99801 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
NKX3-1Q99801 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
NKX3-1Q99801 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
NKX3-1Q99801 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NKX3-1Q99801 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
NKX3-1Q99801 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
NKX3-1Q99801 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NKX3-1Q99801 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
NKX3-1Q99801 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
NKX3-1Q99801 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
NKX3-1Q99801 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC17.21■□□□□ 0.35
NKX3-1Q99801 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
NKX3-1Q99801 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
NKX3-1Q99801 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
NKX3-1Q99801 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
NKX3-1Q99801 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
NKX3-1Q99801 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
NKX3-1Q99801 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
NKX3-1Q99801 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
NKX3-1Q99801 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
NKX3-1Q99801 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
NKX3-1Q99801 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC17.21■□□□□ 0.35
NKX3-1Q99801 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
NKX3-1Q99801 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC17.21■□□□□ 0.35
NKX3-1Q99801 BMP1-204ENST00000397814 836 ntTSL 4 BASIC17.21■□□□□ 0.35
NKX3-1Q99801 SLC7A5P1-201ENST00000568957 537 ntBASIC17.21■□□□□ 0.35
NKX3-1Q99801 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC17.21■□□□□ 0.35
NKX3-1Q99801 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
NKX3-1Q99801 AC016405.3-201ENST00000607710 860 ntBASIC17.21■□□□□ 0.35
NKX3-1Q99801 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC17.21■□□□□ 0.35
NKX3-1Q99801 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
NKX3-1Q99801 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC17.21■□□□□ 0.35
NKX3-1Q99801 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
NKX3-1Q99801 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
NKX3-1Q99801 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC17.21■□□□□ 0.34
NKX3-1Q99801 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.34
NKX3-1Q99801 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC17.21■□□□□ 0.34
NKX3-1Q99801 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.2■□□□□ 0.34
NKX3-1Q99801 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
NKX3-1Q99801 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
NKX3-1Q99801 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
NKX3-1Q99801 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
NKX3-1Q99801 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC17.2■□□□□ 0.34
NKX3-1Q99801 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
NKX3-1Q99801 CYP21A1P-202ENST00000354927 1481 ntBASIC17.2■□□□□ 0.34
NKX3-1Q99801 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
NKX3-1Q99801 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
NKX3-1Q99801 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC17.2■□□□□ 0.34
NKX3-1Q99801 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
NKX3-1Q99801 SAPCD2P1-201ENST00000395413 1184 ntBASIC17.2■□□□□ 0.34
NKX3-1Q99801 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
NKX3-1Q99801 AC004911.1-201ENST00000416316 871 ntBASIC17.2■□□□□ 0.34
NKX3-1Q99801 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC17.2■□□□□ 0.34
NKX3-1Q99801 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
NKX3-1Q99801 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
NKX3-1Q99801 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
NKX3-1Q99801 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
NKX3-1Q99801 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
NKX3-1Q99801 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
NKX3-1Q99801 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
NKX3-1Q99801 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
NKX3-1Q99801 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
NKX3-1Q99801 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
NKX3-1Q99801 KRT19P1-201ENST00000405746 1186 ntBASIC17.19■□□□□ 0.34
NKX3-1Q99801 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC17.19■□□□□ 0.34
NKX3-1Q99801 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC17.19■□□□□ 0.34
NKX3-1Q99801 BRI3-207ENST00000539286 699 ntTSL 2 BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms