Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC33.11■■■□□ 2.89
IFT140Q96RY7 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC33.11■■■□□ 2.89
IFT140Q96RY7 PARN-205ENST00000539279 1557 ntTSL 2 BASIC33.11■■■□□ 2.89
IFT140Q96RY7 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC33.1■■■□□ 2.89
IFT140Q96RY7 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC33.1■■■□□ 2.89
IFT140Q96RY7 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC33.1■■■□□ 2.89
IFT140Q96RY7 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC33.09■■■□□ 2.89
IFT140Q96RY7 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC33.09■■■□□ 2.89
IFT140Q96RY7 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC33.09■■■□□ 2.89
IFT140Q96RY7 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC33.09■■■□□ 2.89
IFT140Q96RY7 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC33.09■■■□□ 2.89
IFT140Q96RY7 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC33.09■■■□□ 2.89
IFT140Q96RY7 CR769767.2-201ENST00000622735 460 ntBASIC33.09■■■□□ 2.89
IFT140Q96RY7 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC33.09■■■□□ 2.89
IFT140Q96RY7 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC33.09■■■□□ 2.89
IFT140Q96RY7 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC33.09■■■□□ 2.89
IFT140Q96RY7 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC33.08■■■□□ 2.89
IFT140Q96RY7 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC33.08■■■□□ 2.89
IFT140Q96RY7 SNX5-210ENST00000481323 562 ntTSL 3 BASIC33.08■■■□□ 2.89
IFT140Q96RY7 LY6E-213ENST00000522528 606 ntTSL 3 BASIC33.08■■■□□ 2.89
IFT140Q96RY7 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC33.08■■■□□ 2.89
IFT140Q96RY7 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC33.08■■■□□ 2.89
IFT140Q96RY7 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC33.08■■■□□ 2.89
IFT140Q96RY7 AC006538.3-201ENST00000612495 578 ntBASIC33.08■■■□□ 2.89
IFT140Q96RY7 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC33.08■■■□□ 2.89
IFT140Q96RY7 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC33.08■■■□□ 2.89
IFT140Q96RY7 KRT8P10-201ENST00000450021 1447 ntBASIC33.08■■■□□ 2.89
IFT140Q96RY7 KRT8P17-201ENST00000453110 1448 ntBASIC33.08■■■□□ 2.89
IFT140Q96RY7 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC33.08■■■□□ 2.89
IFT140Q96RY7 H19-201ENST00000411754 1788 ntTSL 5 BASIC33.08■■■□□ 2.89
IFT140Q96RY7 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC33.07■■■□□ 2.89
IFT140Q96RY7 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC33.07■■■□□ 2.89
IFT140Q96RY7 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC33.07■■■□□ 2.89
IFT140Q96RY7 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC33.07■■■□□ 2.88
IFT140Q96RY7 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC33.07■■■□□ 2.88
IFT140Q96RY7 CA15P1-201ENST00000481698 905 ntBASIC33.07■■■□□ 2.88
IFT140Q96RY7 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC33.07■■■□□ 2.88
IFT140Q96RY7 PRR29-207ENST00000580752 458 ntTSL 3 BASIC33.07■■■□□ 2.88
IFT140Q96RY7 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC33.07■■■□□ 2.88
IFT140Q96RY7 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC33.07■■■□□ 2.88
IFT140Q96RY7 GPALPP1-207ENST00000611650 899 ntBASIC33.07■■■□□ 2.88
IFT140Q96RY7 BCL10-202ENST00000620248 774 ntTSL 5 BASIC33.07■■■□□ 2.88
IFT140Q96RY7 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC33.07■■■□□ 2.88
IFT140Q96RY7 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC33.07■■■□□ 2.88
IFT140Q96RY7 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC33.07■■■□□ 2.88
IFT140Q96RY7 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC33.07■■■□□ 2.88
IFT140Q96RY7 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC33.06■■■□□ 2.88
IFT140Q96RY7 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC33.06■■■□□ 2.88
IFT140Q96RY7 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC33.06■■■□□ 2.88
IFT140Q96RY7 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC33.06■■■□□ 2.88
IFT140Q96RY7 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC33.06■■■□□ 2.88
IFT140Q96RY7 SPDYE13P-201ENST00000445314 798 ntBASIC33.06■■■□□ 2.88
IFT140Q96RY7 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC33.06■■■□□ 2.88
IFT140Q96RY7 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC33.06■■■□□ 2.88
IFT140Q96RY7 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC33.06■■■□□ 2.88
IFT140Q96RY7 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC33.06■■■□□ 2.88
IFT140Q96RY7 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC33.06■■■□□ 2.88
IFT140Q96RY7 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC33.06■■■□□ 2.88
IFT140Q96RY7 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC33.06■■■□□ 2.88
IFT140Q96RY7 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC33.05■■■□□ 2.88
IFT140Q96RY7 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC33.05■■■□□ 2.88
IFT140Q96RY7 SDHD-206ENST00000528182 754 ntTSL 3 BASIC33.05■■■□□ 2.88
IFT140Q96RY7 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC33.05■■■□□ 2.88
IFT140Q96RY7 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC33.05■■■□□ 2.88
IFT140Q96RY7 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC33.05■■■□□ 2.88
IFT140Q96RY7 GOLGA6L3-201ENST00000507199 1679 ntBASIC33.05■■■□□ 2.88
IFT140Q96RY7 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC33.05■■■□□ 2.88
IFT140Q96RY7 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC33.05■■■□□ 2.88
IFT140Q96RY7 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC33.05■■■□□ 2.88
IFT140Q96RY7 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC33.05■■■□□ 2.88
IFT140Q96RY7 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC33.05■■■□□ 2.88
IFT140Q96RY7 KRT8P45-201ENST00000414328 1447 ntBASIC33.05■■■□□ 2.88
IFT140Q96RY7 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC33.05■■■□□ 2.88
IFT140Q96RY7 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC33.05■■■□□ 2.88
IFT140Q96RY7 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC33.05■■■□□ 2.88
IFT140Q96RY7 AC111152.3-201ENST00000569699 673 ntBASIC33.05■■■□□ 2.88
IFT140Q96RY7 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
IFT140Q96RY7 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
IFT140Q96RY7 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC33.04■■■□□ 2.88
IFT140Q96RY7 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC33.04■■■□□ 2.88
IFT140Q96RY7 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC33.04■■■□□ 2.88
IFT140Q96RY7 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
IFT140Q96RY7 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC33.04■■■□□ 2.88
IFT140Q96RY7 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
IFT140Q96RY7 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC33.04■■■□□ 2.88
IFT140Q96RY7 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC33.03■■■□□ 2.88
IFT140Q96RY7 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC33.03■■■□□ 2.88
IFT140Q96RY7 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC33.03■■■□□ 2.88
IFT140Q96RY7 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC33.03■■■□□ 2.88
IFT140Q96RY7 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC33.03■■■□□ 2.88
IFT140Q96RY7 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC33.03■■■□□ 2.88
IFT140Q96RY7 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC33.03■■■□□ 2.88
IFT140Q96RY7 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC33.03■■■□□ 2.88
IFT140Q96RY7 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC33.03■■■□□ 2.88
IFT140Q96RY7 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC33.03■■■□□ 2.88
IFT140Q96RY7 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC33.03■■■□□ 2.88
IFT140Q96RY7 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
IFT140Q96RY7 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC33.02■■■□□ 2.88
IFT140Q96RY7 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC33.02■■■□□ 2.88
IFT140Q96RY7 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms