Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
LRCH3Q96II8 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LRCH3Q96II8 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC21.5■■□□□ 1.03
LRCH3Q96II8 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.5■■□□□ 1.03
LRCH3Q96II8 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
LRCH3Q96II8 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
LRCH3Q96II8 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
LRCH3Q96II8 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
LRCH3Q96II8 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC21.5■■□□□ 1.03
LRCH3Q96II8 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
LRCH3Q96II8 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
LRCH3Q96II8 AL136038.3-201ENST00000561909 1096 ntBASIC21.5■■□□□ 1.03
LRCH3Q96II8 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC21.5■■□□□ 1.03
LRCH3Q96II8 BCL10-202ENST00000620248 774 ntTSL 5 BASIC21.5■■□□□ 1.03
LRCH3Q96II8 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
LRCH3Q96II8 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LRCH3Q96II8 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC21.5■■□□□ 1.03
LRCH3Q96II8 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
LRCH3Q96II8 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LRCH3Q96II8 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC21.5■■□□□ 1.03
LRCH3Q96II8 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
LRCH3Q96II8 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC21.5■■□□□ 1.03
LRCH3Q96II8 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC21.5■■□□□ 1.03
LRCH3Q96II8 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC21.49■■□□□ 1.03
LRCH3Q96II8 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
LRCH3Q96II8 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
LRCH3Q96II8 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
LRCH3Q96II8 STX5-203ENST00000394690 1568 ntTSL 5 BASIC21.49■■□□□ 1.03
LRCH3Q96II8 EFS-203ENST00000429593 2610 ntTSL 2 BASIC21.49■■□□□ 1.03
LRCH3Q96II8 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
LRCH3Q96II8 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
LRCH3Q96II8 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC21.49■■□□□ 1.03
LRCH3Q96II8 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC21.49■■□□□ 1.03
LRCH3Q96II8 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
LRCH3Q96II8 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC21.49■■□□□ 1.03
LRCH3Q96II8 AL441883.1-201ENST00000566170 1045 ntBASIC21.49■■□□□ 1.03
LRCH3Q96II8 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC21.49■■□□□ 1.03
LRCH3Q96II8 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC21.49■■□□□ 1.03
LRCH3Q96II8 AC092119.3-201ENST00000612618 583 ntBASIC21.49■■□□□ 1.03
LRCH3Q96II8 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
LRCH3Q96II8 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.49■■□□□ 1.03
LRCH3Q96II8 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
LRCH3Q96II8 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
LRCH3Q96II8 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
LRCH3Q96II8 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
LRCH3Q96II8 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
LRCH3Q96II8 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
LRCH3Q96II8 AC007375.3-201ENST00000600936 2314 ntBASIC21.49■■□□□ 1.03
LRCH3Q96II8 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LRCH3Q96II8 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
LRCH3Q96II8 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
LRCH3Q96II8 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LRCH3Q96II8 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
LRCH3Q96II8 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LRCH3Q96II8 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
LRCH3Q96II8 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC21.48■■□□□ 1.03
LRCH3Q96II8 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC21.48■■□□□ 1.03
LRCH3Q96II8 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC21.48■■□□□ 1.03
LRCH3Q96II8 FAAHP1-202ENST00000446499 1238 ntBASIC21.48■■□□□ 1.03
LRCH3Q96II8 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC21.48■■□□□ 1.03
LRCH3Q96II8 MIR3652-201ENST00000579335 131 ntBASIC21.48■■□□□ 1.03
LRCH3Q96II8 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
LRCH3Q96II8 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LRCH3Q96II8 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC21.48■■□□□ 1.03
LRCH3Q96II8 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LRCH3Q96II8 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LRCH3Q96II8 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC21.48■■□□□ 1.03
LRCH3Q96II8 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC21.48■■□□□ 1.03
LRCH3Q96II8 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LRCH3Q96II8 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
LRCH3Q96II8 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
LRCH3Q96II8 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
LRCH3Q96II8 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC21.48■■□□□ 1.03
LRCH3Q96II8 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LRCH3Q96II8 STK25-205ENST00000405883 1904 ntTSL 2 BASIC21.47■■□□□ 1.03
LRCH3Q96II8 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.47■■□□□ 1.03
LRCH3Q96II8 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
LRCH3Q96II8 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC21.47■■□□□ 1.03
LRCH3Q96II8 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC21.47■■□□□ 1.03
LRCH3Q96II8 AL023973.1-201ENST00000624619 620 ntBASIC21.47■■□□□ 1.03
LRCH3Q96II8 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC21.47■■□□□ 1.03
LRCH3Q96II8 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LRCH3Q96II8 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
LRCH3Q96II8 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC21.47■■□□□ 1.03
LRCH3Q96II8 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.47■■□□□ 1.03
LRCH3Q96II8 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC21.47■■□□□ 1.03
LRCH3Q96II8 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LRCH3Q96II8 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC21.47■■□□□ 1.03
LRCH3Q96II8 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC21.47■■□□□ 1.03
LRCH3Q96II8 AC026471.6-201ENST00000622954 1905 ntBASIC21.47■■□□□ 1.03
LRCH3Q96II8 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LRCH3Q96II8 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LRCH3Q96II8 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.47■■□□□ 1.03
LRCH3Q96II8 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LRCH3Q96II8 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC21.47■■□□□ 1.03
LRCH3Q96II8 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC21.46■■□□□ 1.03
LRCH3Q96II8 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LRCH3Q96II8 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LRCH3Q96II8 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC21.46■■□□□ 1.03
LRCH3Q96II8 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms